Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36939 * 120.00153 * 2 1 4 4 H 1.07999 * 119.99770 * 206.33928 * 3 2 1 5 5 C 1.38810 * 119.99900 * 26.32729 * 3 2 1 6 6 N 1.31613 * 120.00036 * 10.05930 * 5 3 2 7 7 Si 1.86800 * 119.99905 * 190.06047 * 5 3 2 8 8 H 1.48504 * 109.47173 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47448 * 120.00045 * 7 5 3 10 10 H 1.48504 * 109.47104 * 240.00094 * 7 5 3 11 11 S 1.65599 * 120.00062 * 179.97438 * 2 1 3 12 12 O 1.42098 * 106.40075 * 29.83181 * 11 2 1 13 13 O 1.42096 * 106.40548 * 162.75681 * 11 2 1 14 14 C 1.76209 * 107.21972 * 276.29835 * 11 2 1 15 15 C 1.38199 * 119.99247 * 113.51949 * 14 11 2 16 16 C 1.38442 * 119.98034 * 179.74826 * 15 14 11 17 17 F 1.35103 * 120.01558 * 180.27367 * 16 15 14 18 18 C 1.38475 * 119.97195 * 0.54912 * 16 15 14 19 19 C 1.38170 * 119.98238 * 359.70068 * 18 16 15 20 20 C 1.38312 * 119.98589 * 293.79464 * 14 11 2 21 21 Br 1.89095 * 119.98760 * 359.97438 * 20 14 11 22 22 H 1.09008 * 109.47827 * 265.97923 * 1 2 3 23 23 H 1.09001 * 109.47348 * 25.98221 * 1 2 3 24 24 H 1.09002 * 109.47557 * 145.97984 * 1 2 3 25 25 H 0.97008 * 120.00148 * 180.02562 * 6 5 3 26 26 H 1.08002 * 120.01258 * 359.97413 * 15 14 11 27 27 H 1.08002 * 120.01142 * 179.68506 * 18 16 15 28 28 H 1.07994 * 119.99605 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1456 1.2344 -0.4150 5 6 1.5636 2.3257 0.5331 6 7 0.4407 2.2317 1.2132 7 14 2.3687 3.9930 0.2854 8 1 3.6133 3.8287 -0.5079 9 1 1.4342 4.8912 -0.4392 10 1 2.6990 4.5845 1.6069 11 16 2.2929 -1.4341 0.0006 12 8 1.4695 -2.3732 -0.6770 13 8 3.6210 -1.1309 -0.4036 14 6 2.3939 -1.9774 1.6738 15 6 1.7303 -3.1234 2.0693 16 6 1.8140 -3.5529 3.3827 17 9 1.1700 -4.6761 3.7688 18 6 2.5533 -2.8277 4.3019 19 6 3.2120 -1.6793 3.9063 20 6 3.1326 -1.2537 2.5923 21 35 4.0344 0.3180 2.0517 22 1 -0.3635 -0.0721 1.0252 23 1 -0.3634 0.9238 -0.4502 24 1 -0.3634 -0.8518 -0.5750 25 1 0.0309 3.0282 1.5855 26 1 1.1495 -3.6857 1.3531 27 1 2.6149 -3.1594 5.3279 28 1 3.7890 -1.1138 4.6229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095939300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -67.952207 kcal Electronic energy + Delta-G solvation = -19785.859382 eV Core-core repulsion = 16311.787536 eV Total energy + Delta-G solvation = -3474.071846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 336.957 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.74870 -38.55789 -35.86117 -35.71221 -34.31928 -31.72194 -31.57126 -31.04919 -28.41325 -26.57411 -23.64874 -23.12352 -22.11872 -18.68093 -17.99444 -16.99892 -16.51525 -16.16903 -15.67933 -15.45312 -15.11814 -14.71271 -14.34862 -13.74914 -13.39848 -13.07173 -12.94208 -12.53782 -11.95311 -11.81433 -11.58343 -11.34360 -11.17391 -11.08204 -10.74736 -10.65151 -10.30135 -10.24445 -10.12047 -9.93969 -9.50727 -9.10291 -8.94085 -8.17003 -8.12130 -6.75074 -4.09334 1.00930 1.27525 1.71100 2.11356 3.00419 3.07033 3.12214 3.52874 3.86708 4.37888 4.39141 4.66444 4.84547 4.98843 5.14082 5.42970 5.71200 5.85584 5.94755 6.14873 6.18455 6.32890 6.44438 6.75274 6.96491 7.00497 7.10374 7.32843 8.16213 8.47004 8.98855 10.20938 Molecular weight = 336.96amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.007518 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.414422 B = 3723.569387 C = 4292.325637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.787 5.787 3 C -0.197 4.197 4 H 0.121 0.879 5 C 0.035 3.965 6 N -0.814 5.814 7 Si 0.912 3.088 8 H -0.258 1.258 9 H -0.272 1.272 10 H -0.273 1.273 11 S 2.475 3.525 12 O -1.002 7.002 13 O -0.970 6.970 14 C -0.600 4.600 15 C -0.069 4.069 16 C 0.079 3.921 17 F -0.142 7.142 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.015 4.015 21 Br -0.006 7.006 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.278 0.722 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 -0.958 5.664 6.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.608 5.608 3 C -0.351 4.351 4 H 0.138 0.862 5 C -0.180 4.180 6 N -0.454 5.454 7 Si 0.736 3.264 8 H -0.181 1.181 9 H -0.197 1.197 10 H -0.198 1.198 11 S 2.572 3.428 12 O -0.991 6.991 13 O -0.959 6.959 14 C -0.675 4.675 15 C -0.090 4.090 16 C 0.059 3.941 17 F -0.120 7.120 18 C -0.146 4.146 19 C -0.113 4.113 20 C -0.096 4.096 21 Br 0.081 6.919 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.168 0.832 27 H 0.156 0.844 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.916 -1.167 4.934 5.849 hybrid contribution -0.130 0.060 1.400 1.407 sum 2.786 -1.107 6.334 7.008 Atomic orbital electron populations 1.21334 0.79041 1.01341 1.00766 1.54500 1.13113 1.18511 1.74716 1.20262 1.03171 0.82863 1.28787 0.86160 1.25793 0.96464 1.01150 0.94583 1.70063 1.16188 1.31203 1.27940 0.86017 0.80283 0.80944 0.79122 1.18118 1.19693 1.19800 1.14843 0.75033 0.75127 0.77793 1.93303 1.68383 1.63911 1.73543 1.93389 1.37533 1.83350 1.81675 1.32728 1.01655 1.01183 1.31934 1.20917 0.98084 0.95565 0.94436 1.17909 0.96966 0.85123 0.94090 1.91477 1.79739 1.49156 1.91662 1.21129 0.98242 0.95669 0.99548 1.21053 0.99504 0.96057 0.94723 1.21581 0.97838 0.95281 0.94851 1.96903 1.76065 1.28732 1.90194 0.93562 0.89866 0.93740 0.91095 0.83228 0.84367 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.59 8.93 59.84 0.53 3.12 15 2 N -0.79 -18.14 3.29 -66.69 -0.22 -18.36 15 3 C -0.20 -4.54 6.26 -15.06 -0.09 -4.63 15 4 H 0.12 2.82 6.78 -52.49 -0.36 2.46 15 5 C 0.04 0.77 5.09 -17.43 -0.09 0.68 15 6 N -0.81 -18.15 10.81 55.49 0.60 -17.55 15 7 Si 0.91 17.38 29.57 -169.99 -5.03 12.36 15 8 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 9 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 10 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 11 S 2.48 58.17 5.11 -107.50 -0.55 57.62 15 12 O -1.00 -24.87 15.75 -57.17 -0.90 -25.77 15 13 O -0.97 -24.37 14.80 -57.17 -0.85 -25.21 15 14 C -0.60 -12.77 5.91 -39.57 -0.23 -13.01 15 15 C -0.07 -1.35 9.53 -39.52 -0.38 -1.73 15 16 C 0.08 1.37 7.30 -39.42 -0.29 1.08 15 17 F -0.14 -2.32 17.27 2.25 0.04 -2.28 15 18 C -0.13 -1.93 10.03 -39.52 -0.40 -2.33 15 19 C -0.09 -1.53 9.79 -39.56 -0.39 -1.91 15 20 C -0.01 -0.29 6.21 -39.51 -0.25 -0.54 15 21 Br -0.01 -0.11 27.51 -68.01 -1.87 -1.99 15 22 H 0.05 0.99 7.79 -51.92 -0.40 0.58 15 23 H 0.08 1.76 6.87 -51.93 -0.36 1.40 15 24 H 0.04 0.90 7.17 -51.93 -0.37 0.53 15 25 H 0.28 5.80 8.31 -40.82 -0.34 5.47 15 26 H 0.15 2.82 7.33 -52.49 -0.38 2.44 15 27 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 28 H 0.14 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -26.68 274.82 -8.06 -34.74 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -1.85 Total: 1.56 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.58 Total: -19.26 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.38 Total: -35.91 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -1.75 Total: -50.99 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.55 Total: 57.62 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -1.87 Total: -1.99 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.68 -8.06 -34.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.210 kcal (2) G-P(sol) polarization free energy of solvation -26.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds