Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36937 * 120.00163 * 2 1 4 4 H 1.07997 * 119.99800 * 202.31472 * 3 2 1 5 5 C 1.38807 * 120.00075 * 22.31437 * 3 2 1 6 6 N 1.31617 * 120.00056 * 11.14741 * 5 3 2 7 7 Si 1.86798 * 119.99976 * 191.15210 * 5 3 2 8 8 H 1.48503 * 109.47403 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47549 * 119.99718 * 7 5 3 10 10 H 1.48501 * 109.46931 * 239.99693 * 7 5 3 11 11 S 1.65605 * 119.99967 * 179.97438 * 2 1 3 12 12 O 1.42099 * 106.40181 * 156.46172 * 11 2 1 13 13 O 1.42099 * 106.39967 * 23.53911 * 11 2 1 14 14 C 1.76197 * 107.22001 * 269.99977 * 11 2 1 15 15 C 1.38262 * 119.97140 * 270.02250 * 14 11 2 16 16 C 1.38193 * 120.04248 * 179.97438 * 15 14 11 17 17 C 1.38449 * 119.98657 * 359.97438 * 16 15 14 18 18 F 1.35097 * 120.03317 * 180.27617 * 17 16 15 19 19 C 1.38528 * 119.94190 * 359.97438 * 17 16 15 20 20 Br 1.89095 * 120.02455 * 180.02562 * 19 17 16 21 21 C 1.38221 * 119.96799 * 90.00090 * 14 11 2 22 22 H 1.09007 * 109.47214 * 274.21946 * 1 2 3 23 23 H 1.09004 * 109.47250 * 34.21989 * 1 2 3 24 24 H 1.08999 * 109.47431 * 154.22521 * 1 2 3 25 25 H 0.97000 * 120.00285 * 180.02562 * 6 5 3 26 26 H 1.07995 * 119.97846 * 359.97438 * 15 14 11 27 27 H 1.08005 * 120.00892 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.99273 * 0.04224 * 21 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2208 -0.3551 5 6 1.5336 2.3430 0.4564 6 7 0.3818 2.2697 1.0890 7 14 2.3394 4.0042 0.1727 8 1 3.6193 3.8157 -0.5562 9 1 1.4333 4.8631 -0.6313 10 1 2.6064 4.6547 1.4808 11 16 2.2930 -1.4342 0.0006 12 8 3.5759 -1.1571 -0.5439 13 8 1.4112 -2.4067 -0.5433 14 6 2.5538 -1.8852 1.6838 15 6 3.6931 -1.4627 2.3435 16 6 3.8988 -1.8151 3.6638 17 6 2.9634 -2.5913 4.3267 18 9 3.1610 -2.9316 5.6191 19 6 1.8217 -3.0133 3.6655 20 35 0.5422 -4.0728 4.5688 21 6 1.6190 -2.6606 2.3437 22 1 -0.3634 0.0756 1.0249 23 1 -0.3634 0.8498 -0.5779 24 1 -0.3634 -0.9254 -0.4469 25 1 -0.0489 3.0783 1.4076 26 1 4.4226 -0.8569 1.8267 27 1 4.7888 -1.4845 4.1788 28 1 0.7296 -2.9903 1.8272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095939308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -78.531276 kcal Electronic energy + Delta-G solvation = -19296.923710 eV Core-core repulsion = 15822.393122 eV Total energy + Delta-G solvation = -3474.530588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 336.957 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.97781 -38.66146 -35.96768 -35.83130 -34.53966 -32.31603 -31.65709 -30.58219 -29.06970 -26.60791 -23.66592 -22.96439 -22.54286 -18.63187 -17.89027 -17.37357 -16.83485 -16.42288 -16.18979 -15.69856 -14.77737 -14.44041 -14.35710 -13.50788 -13.43267 -13.27515 -13.07044 -12.73056 -12.56814 -11.97307 -11.53426 -11.22482 -11.15254 -11.08817 -10.88755 -10.80411 -10.70326 -10.42829 -10.36070 -10.25105 -9.95186 -9.45049 -8.92373 -8.66940 -8.26058 -6.73279 -4.19398 0.88287 1.20931 1.54080 1.64475 3.00620 3.07427 3.13286 3.42973 3.85119 4.12144 4.34154 4.62477 4.72356 4.95803 5.15898 5.37426 5.47629 5.70733 5.91311 5.99626 6.21738 6.29064 6.44473 6.74352 6.83544 6.97521 7.08062 7.30273 8.10578 8.46385 8.93611 10.21431 Molecular weight = 336.96amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.004667 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.670151 B = 5997.993899 C = 6183.542947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.798 5.798 3 C -0.238 4.238 4 H 0.120 0.880 5 C 0.031 3.969 6 N -0.827 5.827 7 Si 0.929 3.071 8 H -0.260 1.260 9 H -0.275 1.275 10 H -0.276 1.276 11 S 2.518 3.482 12 O -0.982 6.982 13 O -0.997 6.997 14 C -0.658 4.658 15 C 0.017 3.983 16 C -0.172 4.172 17 C 0.148 3.852 18 F -0.128 7.128 19 C -0.153 4.153 20 Br -0.041 7.041 21 C 0.023 3.977 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.278 0.722 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 -4.990 6.508 8.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.622 5.622 3 C -0.387 4.387 4 H 0.138 0.862 5 C -0.182 4.182 6 N -0.466 5.466 7 Si 0.754 3.246 8 H -0.183 1.183 9 H -0.200 1.200 10 H -0.202 1.202 11 S 2.614 3.386 12 O -0.971 6.971 13 O -0.987 6.987 14 C -0.734 4.734 15 C -0.002 4.002 16 C -0.192 4.192 17 C 0.127 3.873 18 F -0.107 7.107 19 C -0.234 4.234 20 Br 0.044 6.956 21 C 0.003 3.997 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.103 -6.135 6.338 8.821 hybrid contribution 0.555 0.974 1.158 1.612 sum 0.658 -5.161 7.496 9.125 Atomic orbital electron populations 1.21393 0.78939 1.00310 1.02146 1.54306 1.13336 1.18831 1.75695 1.20188 1.01310 0.83015 1.34197 0.86236 1.25841 0.96436 1.01339 0.94623 1.70107 1.15019 1.30581 1.30929 0.85786 0.79876 0.80232 0.78687 1.18326 1.19989 1.20169 1.12510 0.73959 0.74840 0.77271 1.93349 1.41473 1.84583 1.77711 1.93343 1.65157 1.61715 1.78460 1.32900 1.00441 1.07093 1.32976 1.20934 0.94693 0.92331 0.92291 1.21253 1.00135 1.01500 0.96336 1.17477 0.94264 0.96864 0.78743 1.91524 1.94878 1.90281 1.33980 1.21988 0.96467 1.07458 0.97499 1.96665 1.54309 1.67591 1.77038 1.20762 0.97723 0.90827 0.90424 0.92741 0.90469 0.93443 0.91195 0.83151 0.83830 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.50 8.92 59.84 0.53 3.03 15 2 N -0.80 -18.06 3.31 -66.69 -0.22 -18.28 15 3 C -0.24 -5.49 9.44 -15.06 -0.14 -5.63 15 4 H 0.12 2.72 7.16 -52.49 -0.38 2.35 15 5 C 0.03 0.69 5.13 -17.43 -0.09 0.60 15 6 N -0.83 -18.87 10.57 55.49 0.59 -18.28 15 7 Si 0.93 17.36 29.57 -169.99 -5.03 12.33 15 8 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 9 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 10 H -0.28 -5.16 7.11 56.52 0.40 -4.76 15 11 S 2.52 55.70 5.65 -107.50 -0.61 55.09 15 12 O -0.98 -23.46 16.07 -57.17 -0.92 -24.38 15 13 O -1.00 -23.40 15.84 -57.17 -0.91 -24.30 15 14 C -0.66 -12.99 5.97 -39.58 -0.24 -13.23 15 15 C 0.02 0.30 9.52 -39.59 -0.38 -0.08 15 16 C -0.17 -2.72 10.03 -39.52 -0.40 -3.12 15 17 C 0.15 2.47 7.27 -39.40 -0.29 2.18 15 18 F -0.13 -2.02 16.73 2.25 0.04 -1.99 15 19 C -0.15 -2.66 6.23 -39.45 -0.25 -2.91 15 20 Br -0.04 -0.62 33.28 -68.01 -2.26 -2.88 15 21 C 0.02 0.43 9.26 -39.56 -0.37 0.07 15 22 H 0.05 1.16 7.42 -51.92 -0.39 0.78 15 23 H 0.08 1.64 7.18 -51.93 -0.37 1.27 15 24 H 0.05 0.93 6.93 -51.93 -0.36 0.57 15 25 H 0.28 5.92 8.31 -40.82 -0.34 5.58 15 26 H 0.15 2.50 7.61 -52.49 -0.40 2.10 15 27 H 0.14 1.80 8.06 -52.48 -0.42 1.37 15 28 H 0.15 2.66 7.61 -52.49 -0.40 2.26 15 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -26.55 284.41 -8.49 -35.04 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -1.85 Total: 2.43 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.61 Total: -19.06 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.37 Total: -36.57 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -1.82 Total: -48.68 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 55.70 SS G_CDS: -0.61 Total: 55.09 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.26 Total: -2.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.55 -8.49 -35.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.489 kcal (2) G-P(sol) polarization free energy of solvation -26.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds