Wall clock time and date at job start Tue Mar 31 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99801 * 2 1 4 4 H 1.48500 * 109.47231 * 240.00183 * 3 2 1 5 5 H 1.48509 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47142 * 119.99946 * 3 2 1 7 7 C 1.37876 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00294 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47408 * 184.98988 * 9 7 2 11 11 C 1.46908 * 110.99772 * 61.98597 * 10 9 7 12 12 C 1.52997 * 109.46995 * 66.04497 * 11 10 9 13 13 C 1.50697 * 109.47040 * 179.97438 * 12 11 10 14 14 C 1.38224 * 120.01363 * 100.00471 * 13 12 11 15 15 C 1.38217 * 120.02549 * 179.72573 * 14 13 12 16 16 C 1.38269 * 120.05673 * 0.29009 * 15 14 13 17 17 C 1.38174 * 120.02141 * 0.02562 * 16 15 14 18 18 C 1.38443 * 120.01857 * 280.29533 * 13 12 11 19 19 F 1.35105 * 120.02164 * 0.02562 * 18 13 12 20 20 C 1.46892 * 111.00072 * 298.03493 * 10 9 7 21 21 C 1.52998 * 109.47057 * 287.49682 * 20 10 9 22 22 N 1.46900 * 109.46990 * 181.92340 * 21 20 10 23 23 C 1.47011 * 111.00024 * 293.63380 * 22 21 20 24 24 C 1.53098 * 109.25802 * 177.61072 * 23 22 21 25 25 O 1.43016 * 109.26033 * 56.84801 * 24 23 22 26 26 C 1.43010 * 113.73927 * 301.32992 * 25 24 23 27 27 C 1.47020 * 110.99954 * 169.99889 * 22 21 20 28 28 H 0.96994 * 120.00367 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47468 * 64.98694 * 9 7 2 30 30 H 1.09007 * 109.46793 * 304.99415 * 9 7 2 31 31 H 1.08999 * 109.47365 * 306.04859 * 11 10 9 32 32 H 1.09000 * 109.47228 * 186.04402 * 11 10 9 33 33 H 1.09005 * 109.47333 * 60.00385 * 12 11 10 34 34 H 1.08997 * 109.47780 * 299.99920 * 12 11 10 35 35 H 1.07997 * 119.98506 * 359.97438 * 14 13 12 36 36 H 1.08003 * 119.97215 * 180.27495 * 15 14 13 37 37 H 1.07995 * 119.99386 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.01243 * 179.97438 * 17 16 15 39 39 H 1.09003 * 109.47505 * 47.49862 * 20 10 9 40 40 H 1.09005 * 109.47056 * 167.49724 * 20 10 9 41 41 H 1.09003 * 109.47017 * 301.92089 * 21 20 10 42 42 H 1.08991 * 109.47354 * 61.92439 * 21 20 10 43 43 H 1.09003 * 109.50631 * 297.54298 * 23 22 21 44 44 H 1.08994 * 109.50778 * 57.67739 * 23 22 21 45 45 H 1.09002 * 109.50984 * 296.91448 * 24 23 22 46 46 H 1.09002 * 109.54284 * 176.80296 * 24 23 22 47 47 H 1.08999 * 109.50901 * 298.73572 * 26 25 24 48 48 H 1.09005 * 109.54340 * 178.62629 * 26 25 24 49 49 H 1.09001 * 109.50612 * 302.32815 * 27 22 21 50 50 H 1.09002 * 109.50201 * 62.41022 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2012 -3.6130 0.1216 11 6 2.9388 -3.5402 1.3900 12 6 1.9719 -3.7581 2.5555 13 6 2.7287 -3.6841 3.8565 14 6 2.6992 -2.5247 4.6086 15 6 3.3886 -2.4584 5.8047 16 6 4.1135 -3.5494 6.2476 17 6 4.1498 -4.7072 5.4943 18 6 3.4588 -4.7751 4.2962 19 9 3.4937 -5.9066 3.5588 20 6 3.1224 -3.6458 -1.0220 21 6 2.3736 -4.1269 -2.2665 22 7 3.3055 -4.2037 -3.3995 23 6 3.7821 -2.8664 -3.7813 24 6 4.7934 -2.9977 -4.9231 25 8 4.1829 -3.6876 -6.0170 26 6 3.7078 -4.9939 -5.6807 27 6 2.6854 -4.8829 -4.5465 28 1 -0.4850 0.8400 0.0004 29 1 0.6935 -2.5969 -0.9309 30 1 0.5588 -2.5190 0.8422 31 1 3.4052 -2.5595 1.4833 32 1 3.7086 -4.3118 1.4074 33 1 1.5055 -4.7389 2.4623 34 1 1.2021 -2.9866 2.5382 35 1 2.1339 -1.6717 4.2634 36 1 3.3613 -1.5536 6.3938 37 1 4.6521 -3.4964 7.1821 38 1 4.7164 -5.5591 5.8402 39 1 3.5172 -2.6454 -1.1995 40 1 3.9449 -4.3280 -0.8066 41 1 1.9499 -5.1131 -2.0770 42 1 1.5725 -3.4264 -2.5019 43 1 2.9385 -2.2596 -4.1103 44 1 4.2602 -2.3920 -2.9244 45 1 5.6616 -3.5591 -4.5777 46 1 5.1073 -2.0057 -5.2481 47 1 4.5443 -5.6134 -5.3573 48 1 3.2360 -5.4461 -6.5531 49 1 2.3630 -5.8804 -4.2481 50 1 1.8238 -4.3087 -4.8872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095945451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:00 Heat of formation + Delta-G solvation = -58.870034 kcal Electronic energy + Delta-G solvation = -29642.841935 eV Core-core repulsion = 25584.322627 eV Total energy + Delta-G solvation = -4058.519308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.66210 -39.41776 -38.96015 -37.28216 -35.40386 -33.08319 -32.34780 -31.08606 -30.41854 -29.56036 -27.91610 -26.76271 -25.00785 -23.89720 -23.51767 -22.62022 -22.10342 -20.70107 -20.08367 -19.42191 -17.37209 -16.57240 -16.35735 -16.21786 -16.02798 -15.71337 -15.35682 -15.19319 -14.94682 -14.75809 -14.72314 -14.29964 -14.05252 -13.94125 -13.32107 -13.29611 -13.00421 -12.89608 -12.48003 -12.34443 -12.16904 -12.02720 -11.80621 -11.51402 -11.37011 -11.27005 -11.13749 -10.93283 -10.81787 -10.67197 -10.50781 -10.30811 -10.17905 -10.10816 -9.96949 -9.58704 -9.52845 -8.80186 -8.49837 -8.43704 -8.11433 -7.20082 -6.08437 -4.17280 1.29466 1.34590 3.22197 3.28418 3.30310 3.71546 3.85681 4.03640 4.34407 4.43501 4.81691 4.88180 4.98237 5.03288 5.15321 5.16920 5.21697 5.24311 5.31108 5.40160 5.42835 5.49538 5.63013 5.67693 5.73176 5.77749 5.89279 5.90846 5.97776 5.99897 6.07984 6.12500 6.19262 6.21859 6.29046 6.35668 6.45906 6.52741 6.54073 6.68355 6.77427 6.87013 7.06027 7.13566 7.17000 7.28272 7.31446 7.48121 7.84722 8.02920 8.22692 8.26037 8.92605 9.49090 10.96177 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.003525 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.471348 B = 7942.067025 C =10078.586464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.183 3.817 10 N -0.543 5.543 11 C 0.076 3.924 12 C -0.076 4.076 13 C -0.098 4.098 14 C -0.085 4.085 15 C -0.131 4.131 16 C -0.105 4.105 17 C -0.159 4.159 18 C 0.096 3.904 19 F -0.138 7.138 20 C 0.067 3.933 21 C 0.065 3.935 22 N -0.537 5.537 23 C 0.015 3.985 24 C 0.065 3.935 25 O -0.390 6.390 26 C 0.066 3.934 27 C 0.018 3.982 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.592 -8.514 2.667 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.058 3.942 10 N -0.267 5.267 11 C -0.053 4.053 12 C -0.114 4.114 13 C -0.100 4.100 14 C -0.103 4.103 15 C -0.149 4.149 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.077 3.923 19 F -0.116 7.116 20 C -0.062 4.062 21 C -0.062 4.062 22 N -0.263 5.263 23 C -0.113 4.113 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.535 -9.081 2.589 12.081 hybrid contribution 0.190 2.030 0.008 2.039 sum 7.725 -7.051 2.597 10.777 Atomic orbital electron populations 1.69924 1.05936 1.26914 1.50025 1.24913 0.94691 0.98905 0.94989 0.86797 0.79798 0.83622 0.78683 1.20295 1.21195 1.20232 1.21640 0.93142 0.92041 1.51704 0.92687 1.19822 0.91222 0.85478 0.97715 1.62367 1.17379 1.46707 1.00221 1.21751 0.94636 0.99789 0.89087 1.20564 0.98081 1.03578 0.89162 1.20174 0.98606 0.92842 0.98338 1.21153 0.98280 0.97111 0.93725 1.21204 0.98126 0.98802 0.96813 1.20911 0.99230 0.92631 0.99563 1.21070 1.02112 0.99936 0.94644 1.17627 1.00256 0.83200 0.91249 1.91486 1.94982 1.48803 1.76357 1.21822 0.94335 0.99778 0.90263 1.22037 0.93417 1.01208 0.89549 1.62187 1.39198 1.18613 1.06312 1.22813 0.98881 0.90630 0.98967 1.22688 0.94746 0.97180 0.86597 1.87947 1.78117 1.29419 1.35366 1.22632 0.96541 0.84813 0.97171 1.22737 0.96466 1.00054 0.91774 0.92755 0.95572 0.94494 0.93684 0.93138 0.90794 0.89319 0.84607 0.85664 0.85584 0.85266 0.93475 0.92521 0.90808 0.93849 0.93698 0.89028 0.92519 0.88727 0.92517 0.88871 0.89844 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.55 -14.12 7.33 -34.44 -0.25 -14.38 16 8 H 0.06 1.43 5.96 -52.49 -0.31 1.11 16 9 C 0.18 4.44 4.77 -4.98 -0.02 4.41 16 10 N -0.54 -11.17 4.66 -236.07 -1.10 -12.27 16 11 C 0.08 1.46 4.74 -3.82 -0.02 1.44 16 12 C -0.08 -1.36 4.99 -27.89 -0.14 -1.50 16 13 C -0.10 -1.56 5.14 -104.55 -0.54 -2.10 16 14 C -0.08 -1.24 9.67 -39.59 -0.38 -1.62 16 15 C -0.13 -1.60 10.04 -39.58 -0.40 -1.99 16 16 C -0.11 -1.17 10.04 -39.59 -0.40 -1.57 16 17 C -0.16 -1.96 10.03 -39.52 -0.40 -2.36 16 18 C 0.10 1.43 7.24 -39.42 -0.29 1.15 16 19 F -0.14 -2.18 16.67 2.25 0.04 -2.14 16 20 C 0.07 1.27 4.70 -3.83 -0.02 1.25 16 21 C 0.07 1.15 4.98 -3.82 -0.02 1.13 16 22 N -0.54 -8.38 4.73 -234.31 -1.11 -9.48 16 23 C 0.02 0.24 5.44 -3.71 -0.02 0.22 16 24 C 0.06 0.86 7.01 37.21 0.26 1.12 16 25 O -0.39 -5.55 10.83 -35.23 -0.38 -5.93 16 26 C 0.07 0.78 7.01 37.21 0.26 1.04 16 27 C 0.02 0.24 5.65 -3.71 -0.02 0.22 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.69 6.70 -51.93 -0.35 0.34 16 30 H 0.04 0.96 6.38 -51.93 -0.33 0.63 16 31 H 0.04 0.95 6.53 -51.93 -0.34 0.62 16 32 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 33 H 0.07 1.31 7.95 -51.93 -0.41 0.89 16 34 H 0.09 1.73 6.38 -51.93 -0.33 1.40 16 35 H 0.14 2.02 8.04 -52.49 -0.42 1.59 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.05 0.99 4.67 -51.93 -0.24 0.74 16 40 H 0.06 1.03 7.80 -51.93 -0.40 0.62 16 41 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 42 H 0.04 0.87 6.80 -51.93 -0.35 0.52 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.49 6.42 -51.93 -0.33 1.15 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -28.54 394.20 -11.40 -39.94 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.02 Total: 4.44 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.48 Total: -11.80 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -1.47 Total: -46.12 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.38 Total: -5.93 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.54 -11.40 -39.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095945451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.932 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds