Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46832 * 2 1 4 4 C 1.35967 * 116.99749 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.01887 * 359.97438 * 4 3 2 6 6 C 1.40795 * 119.66328 * 179.97438 * 5 4 3 7 7 C 1.41199 * 120.15593 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00188 * 330.14408 * 7 6 5 9 9 C 1.39868 * 120.00036 * 150.13573 * 7 6 5 10 10 N 1.30895 * 120.00317 * 161.73353 * 9 7 6 11 11 Si 1.86802 * 120.00317 * 341.73742 * 9 7 6 12 12 H 1.48504 * 109.47269 * 95.41025 * 11 9 7 13 13 H 1.48494 * 109.47700 * 215.41560 * 11 9 7 14 14 H 1.48502 * 109.46954 * 335.41625 * 11 9 7 15 15 C 1.40847 * 119.69120 * 0.02562 * 6 5 4 16 16 C 1.36523 * 120.02186 * 359.97438 * 15 6 5 17 17 Br 1.89098 * 119.82958 * 179.97438 * 16 15 6 18 18 C 1.39250 * 120.34178 * 359.74681 * 16 15 6 19 19 O 1.35750 * 119.83975 * 180.25606 * 18 16 15 20 20 C 1.42908 * 116.99702 * 270.25294 * 19 18 16 21 21 F 1.39907 * 109.47046 * 299.99977 * 20 19 18 22 22 F 1.39891 * 109.47046 * 60.00343 * 20 19 18 23 23 H 1.08998 * 109.46935 * 299.99880 * 1 2 3 24 24 H 1.08998 * 109.47108 * 60.00106 * 1 2 3 25 25 H 1.09000 * 109.46656 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47430 * 240.00008 * 2 1 3 27 27 H 1.09003 * 109.47558 * 119.99923 * 2 1 3 28 28 H 1.08001 * 120.16732 * 359.95718 * 5 4 3 29 29 H 0.97000 * 120.00405 * 180.02562 * 10 9 7 30 30 H 1.08001 * 119.98544 * 179.97438 * 15 6 5 31 31 H 1.09002 * 109.47088 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1942 0.4327 -0.0005 6 6 5.5889 0.6258 -0.0016 7 6 6.4590 -0.4862 -0.0011 8 1 6.1532 -1.4109 0.4656 9 6 7.7168 -0.3903 -0.6052 10 7 8.6520 -1.2576 -0.3110 11 14 8.0623 0.9756 -1.8317 12 1 8.7127 2.1142 -1.1345 13 1 8.9632 0.4679 -2.8974 14 1 6.7855 1.4309 -2.4382 15 6 6.1121 1.9335 -0.0022 16 6 5.2683 3.0068 -0.0022 17 35 5.9767 4.7601 -0.0022 18 6 3.8888 2.8171 -0.0070 19 8 3.0593 3.8916 -0.0122 20 6 2.6625 4.4111 1.2587 21 9 1.9879 3.4188 1.9781 22 9 3.7962 4.8150 1.9718 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7847 -0.5666 0.0006 29 1 9.5245 -1.1909 -0.7297 30 1 7.1811 2.0872 -0.0026 31 1 2.0018 5.2655 1.1117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = -168.813311 kcal Electronic energy + Delta-G solvation = -21740.393082 eV Core-core repulsion = 17896.993400 eV Total energy + Delta-G solvation = -3843.399682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 335.996 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.38497 -46.51947 -39.52158 -37.48954 -36.47164 -33.69333 -31.65177 -31.22501 -29.33993 -28.18816 -26.18233 -24.34761 -23.19604 -21.51660 -20.50356 -18.23787 -18.17320 -17.51344 -17.11916 -16.22759 -15.69036 -15.59065 -15.29458 -14.83414 -13.51182 -13.38688 -13.27266 -13.17161 -13.08280 -12.92360 -12.86999 -12.40038 -12.37798 -12.03074 -11.62679 -11.51718 -11.31245 -11.09527 -10.86351 -10.57944 -10.52849 -10.18951 -9.83657 -9.66500 -9.53533 -9.25109 -7.84503 -7.40048 -7.28957 -4.85532 1.89205 2.30457 2.34323 2.95777 3.04484 3.15513 3.67330 3.77722 3.80954 4.13251 4.38556 4.98934 5.16708 5.21798 5.28955 5.38100 5.53844 5.71663 6.02060 6.05832 6.07497 6.11748 6.29600 6.36600 6.58595 6.83930 7.06115 7.28742 7.51085 7.62190 7.93225 8.06503 8.32557 8.45764 9.70100 Molecular weight = 336.00amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.007906 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.665541 B = 3540.829783 C = 5608.934994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.310 6.310 4 C 0.181 3.819 5 C -0.291 4.291 6 C 0.124 3.876 7 C -0.419 4.419 8 H 0.100 0.900 9 C 0.084 3.916 10 N -0.782 5.782 11 Si 0.901 3.099 12 H -0.259 1.259 13 H -0.283 1.283 14 H -0.238 1.238 15 C -0.226 4.226 16 C 0.004 3.996 17 Br -0.072 7.072 18 C -0.088 4.088 19 O -0.302 6.302 20 C 0.385 3.615 21 F -0.209 7.209 22 F -0.207 7.207 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.119 0.881 29 H 0.293 0.707 30 H 0.119 0.881 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 6.829 -0.156 10.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.224 6.224 4 C 0.134 3.866 5 C -0.312 4.312 6 C 0.119 3.881 7 C -0.445 4.445 8 H 0.118 0.882 9 C -0.139 4.139 10 N -0.403 5.403 11 Si 0.726 3.274 12 H -0.184 1.184 13 H -0.209 1.209 14 H -0.161 1.161 15 C -0.247 4.247 16 C -0.076 4.076 17 Br 0.013 6.987 18 C -0.134 4.134 19 O -0.221 6.221 20 C 0.295 3.705 21 F -0.191 7.191 22 F -0.189 7.189 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.575 7.534 -0.273 10.687 hybrid contribution 0.402 -0.304 -0.079 0.510 sum -7.174 7.230 -0.352 10.191 Atomic orbital electron populations 1.21737 0.93539 1.02142 1.03083 1.22663 0.94944 0.82937 1.01452 1.86036 1.19549 1.28236 1.88551 1.18744 0.81598 0.92639 0.93576 1.20965 0.93486 0.96243 1.20463 1.17436 0.91695 0.91571 0.87386 1.19578 0.96723 0.99117 1.29115 0.88226 1.26286 0.94507 0.96678 0.96406 1.69693 1.03728 1.33080 1.33850 0.86415 0.80787 0.80238 0.79955 1.18442 1.20936 1.16099 1.20706 0.98321 0.91467 1.14164 1.21159 0.92976 0.89826 1.03652 1.96498 1.85280 1.19205 1.97671 1.16703 0.86240 0.83092 1.27389 1.86736 1.64615 1.45584 1.25136 1.23663 0.81166 0.87465 0.78175 1.93038 1.80353 1.65951 1.79756 1.93072 1.55008 1.90650 1.80141 0.91844 0.91881 0.90921 0.92209 0.92304 0.86271 0.89656 0.86387 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.16 0.38 -1.37 16 2 C 0.06 0.86 5.46 37.16 0.20 1.06 16 3 O -0.31 -6.08 9.36 -34.19 -0.32 -6.40 16 4 C 0.18 3.99 6.44 -39.15 -0.25 3.74 16 5 C -0.29 -6.52 8.78 -38.76 -0.34 -6.86 16 6 C 0.12 3.00 5.10 -106.82 -0.54 2.45 16 7 C -0.42 -10.46 9.55 -37.85 -0.36 -10.82 16 8 H 0.10 2.56 8.06 -52.49 -0.42 2.13 16 9 C 0.08 2.05 5.40 -17.34 -0.09 1.96 16 10 N -0.78 -19.19 13.93 55.54 0.77 -18.41 16 11 Si 0.90 19.58 24.51 -169.99 -4.17 15.42 16 12 H -0.26 -5.52 6.71 56.52 0.38 -5.14 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.24 -5.37 6.87 56.52 0.39 -4.98 16 15 C -0.23 -5.36 6.83 -39.21 -0.27 -5.63 16 16 C 0.00 0.08 6.00 -39.82 -0.24 -0.16 16 17 Br -0.07 -1.41 31.28 -68.01 -2.13 -3.54 16 18 C -0.09 -1.97 5.36 -38.63 -0.21 -2.17 16 19 O -0.30 -6.09 9.45 -33.51 -0.32 -6.41 16 20 C 0.39 6.55 6.35 101.05 0.64 7.19 16 21 F -0.21 -3.88 16.44 2.25 0.04 -3.84 16 22 F -0.21 -3.80 15.14 2.25 0.03 -3.77 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 27 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 28 H 0.12 2.44 6.29 -52.49 -0.33 2.11 16 29 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 30 H 0.12 2.79 4.73 -52.49 -0.25 2.54 16 31 H 0.15 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -27.17 291.59 -5.43 -32.60 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -2.66 Total: 0.58 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.08 Total: -10.62 kcal Atomic # 7 Polarization: -19.19 SS G_CDS: 0.77 Total: -18.41 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.64 Total: -12.81 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.07 Total: -7.61 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.17 Total: 15.42 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -2.13 Total: -3.54 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.17 -5.43 -32.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.212 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds