Wall clock time and date at job start Tue Mar 31 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46832 * 2 1 4 4 C 1.35967 * 116.99749 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.01887 * 359.97438 * 4 3 2 6 6 C 1.40795 * 119.66328 * 179.97438 * 5 4 3 7 7 C 1.41199 * 120.15593 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00188 * 330.14408 * 7 6 5 9 9 C 1.39868 * 120.00036 * 150.13573 * 7 6 5 10 10 N 1.30895 * 120.00317 * 161.73353 * 9 7 6 11 11 Si 1.86802 * 120.00317 * 341.73742 * 9 7 6 12 12 H 1.48504 * 109.47269 * 95.41025 * 11 9 7 13 13 H 1.48494 * 109.47700 * 215.41560 * 11 9 7 14 14 H 1.48502 * 109.46954 * 335.41625 * 11 9 7 15 15 C 1.40847 * 119.69120 * 0.02562 * 6 5 4 16 16 C 1.36523 * 120.02186 * 359.97438 * 15 6 5 17 17 Br 1.89098 * 119.82958 * 179.97438 * 16 15 6 18 18 C 1.39250 * 120.34178 * 359.74681 * 16 15 6 19 19 O 1.35750 * 119.83975 * 180.25606 * 18 16 15 20 20 C 1.42908 * 116.99702 * 270.25294 * 19 18 16 21 21 F 1.39907 * 109.47046 * 299.99977 * 20 19 18 22 22 F 1.39891 * 109.47046 * 60.00343 * 20 19 18 23 23 H 1.08998 * 109.46935 * 299.99880 * 1 2 3 24 24 H 1.08998 * 109.47108 * 60.00106 * 1 2 3 25 25 H 1.09000 * 109.46656 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47430 * 240.00008 * 2 1 3 27 27 H 1.09003 * 109.47558 * 119.99923 * 2 1 3 28 28 H 1.08001 * 120.16732 * 359.95718 * 5 4 3 29 29 H 0.97000 * 120.00405 * 180.02562 * 10 9 7 30 30 H 1.08001 * 119.98544 * 179.97438 * 15 6 5 31 31 H 1.09002 * 109.47088 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1942 0.4327 -0.0005 6 6 5.5889 0.6258 -0.0016 7 6 6.4590 -0.4862 -0.0011 8 1 6.1532 -1.4109 0.4656 9 6 7.7168 -0.3903 -0.6052 10 7 8.6520 -1.2576 -0.3110 11 14 8.0623 0.9756 -1.8317 12 1 8.7127 2.1142 -1.1345 13 1 8.9632 0.4679 -2.8974 14 1 6.7855 1.4309 -2.4382 15 6 6.1121 1.9335 -0.0022 16 6 5.2683 3.0068 -0.0022 17 35 5.9767 4.7601 -0.0022 18 6 3.8888 2.8171 -0.0070 19 8 3.0593 3.8916 -0.0122 20 6 2.6625 4.4111 1.2587 21 9 1.9879 3.4188 1.9781 22 9 3.7962 4.8150 1.9718 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7847 -0.5666 0.0006 29 1 9.5245 -1.1909 -0.7297 30 1 7.1811 2.0872 -0.0026 31 1 2.0018 5.2655 1.1117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:18 Heat of formation + Delta-G solvation = -184.093305 kcal Electronic energy + Delta-G solvation = -21741.055672 eV Core-core repulsion = 17896.993400 eV Total energy + Delta-G solvation = -3844.062272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 335.996 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.79812 -47.94292 -41.16239 -39.03353 -38.16581 -35.47680 -33.12357 -32.73921 -30.95929 -29.90285 -27.80221 -25.85542 -24.59326 -23.20001 -22.10743 -19.95960 -19.74765 -18.90952 -18.59344 -17.86148 -17.38106 -16.98913 -16.92260 -16.43210 -15.09929 -14.96910 -14.94192 -14.77866 -14.61495 -14.39628 -14.35412 -13.84824 -13.57686 -13.38243 -13.20752 -13.01624 -12.92277 -12.67981 -12.48318 -12.19963 -11.91953 -11.81056 -11.53008 -11.35683 -11.16453 -10.96261 -9.59567 -9.12249 -9.08846 -6.72573 0.15099 0.55419 0.60689 1.22434 1.30711 1.41839 2.01587 2.09242 2.35453 2.58744 2.90401 3.19960 3.89855 3.95722 4.09466 4.13746 4.26667 4.34301 4.43628 4.47718 4.60273 4.81332 4.89521 4.98372 5.08030 5.23945 5.29866 5.50226 5.72553 6.01714 6.05353 6.29542 6.52457 6.72206 7.94975 Molecular weight = 336.00amu Principal moments of inertia in cm(-1) A = 0.011053 B = 0.007906 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.665541 B = 3540.829783 C = 5608.934994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 O -0.315 6.315 4 C 0.176 3.824 5 C -0.294 4.294 6 C 0.114 3.886 7 C -0.451 4.451 8 H 0.078 0.922 9 C 0.061 3.939 10 N -0.814 5.814 11 Si 0.941 3.059 12 H -0.253 1.253 13 H -0.265 1.265 14 H -0.253 1.253 15 C -0.240 4.240 16 C -0.013 4.013 17 Br -0.042 7.042 18 C -0.083 4.083 19 O -0.311 6.311 20 C 0.381 3.619 21 F -0.219 7.219 22 F -0.215 7.215 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.132 0.868 29 H 0.302 0.698 30 H 0.116 0.884 31 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.448 8.399 -0.483 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 O -0.229 6.229 4 C 0.128 3.872 5 C -0.314 4.314 6 C 0.109 3.891 7 C -0.478 4.478 8 H 0.096 0.904 9 C -0.159 4.159 10 N -0.438 5.438 11 Si 0.763 3.237 12 H -0.178 1.178 13 H -0.190 1.190 14 H -0.176 1.176 15 C -0.261 4.261 16 C -0.093 4.093 17 Br 0.043 6.957 18 C -0.129 4.129 19 O -0.230 6.230 20 C 0.292 3.708 21 F -0.201 7.201 22 F -0.197 7.197 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.142 9.096 -0.595 12.910 hybrid contribution 0.646 -0.661 0.084 0.928 sum -8.496 8.435 -0.511 11.983 Atomic orbital electron populations 1.21753 0.90475 1.04152 1.03250 1.23049 0.97331 0.81114 1.01655 1.86044 1.17925 1.30831 1.88081 1.18850 0.82785 0.92455 0.93099 1.21162 0.93092 0.97291 1.19874 1.17578 0.92366 0.91696 0.87450 1.19519 0.97999 0.98866 1.31400 0.90408 1.26734 0.94126 0.98012 0.97061 1.69691 1.04449 1.34420 1.35200 0.85823 0.80214 0.78736 0.78914 1.17770 1.19038 1.17644 1.20709 0.98419 0.91704 1.15288 1.21396 0.93317 0.91270 1.03301 1.96492 1.85012 1.16582 1.97593 1.16935 0.86600 0.84015 1.25393 1.86653 1.64104 1.44764 1.27458 1.24483 0.81442 0.88419 0.76475 1.93022 1.80396 1.66764 1.79890 1.93057 1.55850 1.90599 1.80242 0.91820 0.91517 0.87999 0.91848 0.92299 0.85073 0.88650 0.86687 0.77079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.04 1.26 5.46 71.98 0.39 1.66 16 3 O -0.32 -11.88 9.36 -79.27 -0.74 -12.62 16 4 C 0.18 7.57 6.44 22.55 0.15 7.72 16 5 C -0.29 -13.21 8.78 22.80 0.20 -13.01 16 6 C 0.11 5.58 5.10 -21.29 -0.11 5.47 16 7 C -0.45 -23.32 9.55 23.39 0.22 -23.09 16 8 H 0.08 4.22 8.06 -2.91 -0.02 4.20 16 9 C 0.06 3.01 5.40 85.23 0.46 3.47 16 10 N -0.81 -40.85 13.93 21.82 0.30 -40.54 16 11 Si 0.94 40.25 24.51 68.60 1.68 41.93 16 12 H -0.25 -10.44 6.71 99.48 0.67 -9.77 16 13 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 14 H -0.25 -11.32 6.87 99.48 0.68 -10.64 16 15 C -0.24 -11.41 6.83 22.51 0.15 -11.26 16 16 C -0.01 -0.57 6.00 22.11 0.13 -0.44 16 17 Br -0.04 -1.58 31.28 -20.37 -0.64 -2.22 16 18 C -0.08 -3.60 5.36 22.89 0.12 -3.48 16 19 O -0.31 -11.75 9.45 -76.84 -0.73 -12.47 16 20 C 0.38 11.71 6.35 113.37 0.72 12.43 16 21 F -0.22 -7.56 16.44 44.97 0.74 -6.82 16 22 F -0.22 -7.36 15.14 44.97 0.68 -6.68 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.80 7.66 -2.39 -0.02 1.78 16 27 H 0.06 1.71 7.66 -2.39 -0.02 1.70 16 28 H 0.13 5.41 6.29 -2.91 -0.02 5.39 16 29 H 0.30 13.52 8.30 -92.71 -0.77 12.75 16 30 H 0.12 5.44 4.73 -2.91 -0.01 5.43 16 31 H 0.21 3.95 8.14 -2.39 -0.02 3.93 16 Total: -1.00 -58.48 291.59 5.60 -52.88 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.12 Total: 9.27 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 3.18 Total: -22.73 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.30 Total: -40.54 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.47 Total: -25.09 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 1.42 Total: -13.50 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.68 Total: 41.93 kcal Atomic # 35 Polarization: -1.58 SS G_CDS: -0.64 Total: -2.22 kcal Total: -58.48 5.60 -52.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.212 kcal (2) G-P(sol) polarization free energy of solvation -58.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds