Wall clock time and date at job start Tue Mar 31 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38605 * 119.99844 * 2 1 4 4 N 1.29686 * 124.95357 * 359.97438 * 3 2 1 5 5 C 1.32115 * 116.87231 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.71425 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47279 * 275.00133 * 6 5 4 8 8 C 1.46896 * 111.00045 * 293.95612 * 7 6 5 9 9 C 1.50698 * 109.47239 * 69.99760 * 8 7 6 10 10 H 1.07998 * 120.00134 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99568 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99959 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00338 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47274 * 90.00544 * 13 11 9 15 15 H 1.48499 * 109.47483 * 209.99987 * 13 11 9 16 16 H 1.48499 * 109.47114 * 330.00418 * 13 11 9 17 17 C 1.46902 * 110.99726 * 169.99899 * 7 6 5 18 18 C 1.53000 * 109.46599 * 190.00096 * 17 7 6 19 19 C 1.53780 * 113.61469 * 274.13381 * 18 17 7 20 20 C 1.53958 * 87.02044 * 220.04828 * 19 18 17 21 21 C 1.53785 * 113.61227 * 176.52560 * 18 17 7 22 22 C 1.33332 * 114.57768 * 0.02562 * 5 4 3 23 23 S 1.70970 * 124.94749 * 179.69548 * 3 2 1 24 24 C 1.46501 * 119.99886 * 180.02562 * 2 1 3 25 25 C 1.53001 * 117.51946 * 351.28438 * 24 2 1 26 26 C 1.52999 * 60.00190 * 107.47992 * 25 24 2 27 27 H 1.08997 * 109.47232 * 270.00017 * 1 2 3 28 28 H 1.08995 * 109.47167 * 30.00093 * 1 2 3 29 29 H 1.09000 * 109.46852 * 149.99778 * 1 2 3 30 30 H 1.09006 * 109.46866 * 35.00300 * 6 5 4 31 31 H 1.09003 * 109.46926 * 155.00058 * 6 5 4 32 32 H 1.09003 * 109.47005 * 190.00142 * 8 7 6 33 33 H 1.09006 * 109.47040 * 309.99488 * 8 7 6 34 34 H 0.97000 * 120.00640 * 179.97438 * 12 11 9 35 35 H 1.09003 * 109.46992 * 310.00078 * 17 7 6 36 36 H 1.08994 * 109.46877 * 70.00185 * 17 7 6 37 37 H 1.09004 * 112.85508 * 45.33482 * 18 17 7 38 38 H 1.08997 * 113.61868 * 334.57312 * 19 18 17 39 39 H 1.09007 * 113.61115 * 105.47841 * 19 18 17 40 40 H 1.08992 * 113.54069 * 270.81281 * 20 19 18 41 41 H 1.09003 * 113.66204 * 139.92822 * 20 19 18 42 42 H 1.08993 * 113.61775 * 254.53035 * 21 18 17 43 43 H 1.08999 * 113.61164 * 25.35749 * 21 18 17 44 44 H 1.07998 * 125.95537 * 179.97438 * 22 5 4 45 45 H 1.09002 * 115.54982 * 205.58235 * 24 2 1 46 46 H 1.09001 * 117.49733 * 214.97423 * 25 24 2 47 47 H 1.08995 * 117.49577 * 359.97438 * 25 24 2 48 48 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 49 49 H 1.09004 * 117.49681 * 107.48417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2004 0.0000 4 7 1.6090 2.3753 -0.0005 5 6 2.4238 3.4152 0.0001 6 6 1.9281 4.8383 -0.0009 7 7 1.6545 5.2606 -1.3810 8 6 2.8932 5.3215 -2.1682 9 6 3.4065 3.9247 -2.4061 10 1 2.8662 3.0765 -2.0122 11 6 4.5658 3.7297 -3.1265 12 7 5.0140 2.5107 -3.3337 13 14 5.4998 5.1966 -3.8084 14 1 6.4943 5.6591 -2.8072 15 1 6.2010 4.8006 -5.0560 16 1 4.5467 6.2964 -4.1039 17 6 0.9501 6.5495 -1.4073 18 6 0.4639 6.8359 -2.8295 19 6 1.5189 7.5193 -3.7153 20 6 0.3732 8.3817 -4.2756 21 6 -0.3628 8.1271 -2.9495 22 6 3.7203 3.1039 0.0006 23 16 3.8613 1.3479 0.0074 24 6 2.1975 -1.2687 -0.0006 25 6 1.3894 -2.5517 0.2045 26 6 1.9615 -2.2202 -1.1753 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.0129 4.9047 0.5876 31 1 2.6876 5.4880 0.4341 32 1 2.6921 5.8027 -3.1254 33 1 3.6423 5.8960 -1.6232 34 1 5.8294 2.3734 -3.8408 35 1 0.0953 6.5102 -0.7321 36 1 1.6285 7.3409 -1.0890 37 1 -0.0062 5.9714 -3.2984 38 1 2.2590 8.0884 -3.1528 39 1 1.9668 6.8537 -4.4533 40 1 -0.1209 7.9401 -5.1410 41 1 0.6465 9.4255 -4.4298 42 1 -1.4317 7.9515 -3.0702 43 1 -0.1391 8.8621 -2.1764 44 1 4.5410 3.8059 0.0008 45 1 3.2008 -1.2326 0.4241 46 1 1.8610 -3.3595 0.7641 47 1 0.3126 -2.4518 0.3403 48 1 1.2610 -1.9023 -1.9475 49 1 2.8095 -2.8100 -1.5234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095968216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:29 Heat of formation + Delta-G solvation = 132.634369 kcal Electronic energy + Delta-G solvation = -27747.557777 eV Core-core repulsion = 24225.441467 eV Total energy + Delta-G solvation = -3522.116311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.34122 -38.74329 -37.94967 -35.74707 -33.49303 -32.37924 -29.59019 -28.42552 -27.35827 -26.83738 -25.33277 -24.37564 -22.79326 -22.36719 -22.28992 -20.42959 -19.86544 -19.07975 -18.50788 -17.60067 -16.88986 -15.89051 -15.48691 -15.15729 -14.79416 -14.72441 -14.45370 -14.18426 -13.97464 -13.45672 -13.12185 -12.72226 -12.67682 -12.50835 -12.37585 -12.16187 -12.07789 -11.89526 -11.75655 -11.54726 -11.33385 -11.26348 -11.10453 -10.94960 -10.68237 -10.57176 -10.36315 -10.20423 -9.98727 -9.95655 -9.70784 -9.59393 -9.32352 -8.65990 -8.58828 -8.31649 -7.97352 -7.28233 -6.61007 -5.90795 -3.78840 2.02957 2.27039 2.89129 3.28547 3.29831 3.39153 3.41575 3.81033 4.02345 4.49930 4.82665 4.83811 4.94474 4.94846 5.02464 5.05283 5.16301 5.29022 5.34700 5.40335 5.44899 5.60773 5.77694 5.81501 5.86875 5.87911 5.97106 5.98683 6.03471 6.04817 6.10333 6.13580 6.17187 6.19319 6.21240 6.31940 6.45501 6.46659 6.60757 6.73632 6.86472 6.95394 7.04875 7.12511 7.34564 7.72170 7.77102 8.03057 8.14542 8.79424 8.98561 9.22561 9.68681 11.18650 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004185 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.450467 B = 6688.956338 C = 7958.873088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.568 5.568 3 C 0.283 3.717 4 N -0.521 5.521 5 C 0.101 3.899 6 C 0.148 3.852 7 N -0.520 5.520 8 C 0.150 3.850 9 C -0.492 4.492 10 H 0.097 0.903 11 C 0.069 3.931 12 N -0.887 5.887 13 Si 0.857 3.143 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.267 1.267 17 C 0.067 3.933 18 C -0.095 4.095 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.194 4.194 23 S 0.099 5.901 24 C 0.098 3.902 25 C -0.187 4.187 26 C -0.194 4.194 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.042 0.958 33 H -0.023 1.023 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.158 0.842 45 H 0.123 0.877 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -1.405 6.713 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.288 5.288 3 C -0.085 4.085 4 N -0.245 5.245 5 C -0.029 4.029 6 C 0.018 3.982 7 N -0.244 5.244 8 C 0.024 3.976 9 C -0.530 4.530 10 H 0.115 0.885 11 C -0.132 4.132 12 N -0.527 5.527 13 Si 0.685 3.315 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.192 1.192 17 C -0.062 4.062 18 C -0.114 4.114 19 C -0.174 4.174 20 C -0.182 4.182 21 C -0.174 4.174 22 C -0.336 4.336 23 S 0.349 5.651 24 C -0.008 4.008 25 C -0.225 4.225 26 C -0.234 4.234 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.060 0.940 33 H -0.006 1.006 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.176 0.824 45 H 0.140 0.860 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.070 -2.595 6.434 9.905 hybrid contribution 1.009 2.216 -0.532 2.493 sum -6.061 -0.378 5.902 8.468 Atomic orbital electron populations 1.21465 0.78867 1.02527 1.00629 1.44724 1.04210 0.99495 1.80366 1.22975 0.93127 0.89135 1.03217 1.65929 1.38048 0.96125 1.24410 1.18886 0.87889 0.93649 1.02498 1.20229 0.98262 0.89433 0.90312 1.61959 1.25674 1.26175 1.10566 1.20474 0.85303 0.98385 0.93411 1.21537 1.07275 0.92302 1.31913 0.88518 1.24805 0.97373 0.94782 0.96285 1.69899 1.22452 1.19497 1.40829 0.87148 0.80649 0.84707 0.79001 1.20843 1.21574 1.19187 1.22025 0.97266 0.90772 0.96125 1.22474 0.96594 0.96585 0.95760 1.23075 0.96225 0.98435 0.99619 1.22861 0.98391 0.99626 0.97277 1.22913 0.98806 0.98147 0.97554 1.25848 1.00428 0.95108 1.12203 1.83438 1.03488 1.05496 1.72701 1.21415 0.96337 0.80183 1.02837 1.23378 1.00481 0.98132 1.00480 1.23459 1.04008 1.03725 0.92188 0.93913 0.90340 0.92317 0.91355 0.94871 0.94003 1.00589 0.93161 0.91834 0.96073 0.88474 0.90813 0.91047 0.90510 0.92168 0.91912 0.90653 0.82435 0.85957 0.88066 0.88263 0.88390 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.60 9.80 59.85 0.59 2.19 16 2 N -0.57 -9.66 3.32 -176.26 -0.58 -10.24 16 3 C 0.28 5.79 7.66 -87.69 -0.67 5.12 16 4 N -0.52 -11.43 9.66 -11.36 -0.11 -11.54 16 5 C 0.10 2.20 4.05 -84.18 -0.34 1.86 16 6 C 0.15 2.96 5.40 -4.98 -0.03 2.93 16 7 N -0.52 -10.96 4.56 -237.51 -1.08 -12.04 16 8 C 0.15 3.55 3.52 -4.98 -0.02 3.53 16 9 C -0.49 -13.21 6.46 -34.44 -0.22 -13.43 16 10 H 0.10 2.82 4.91 -52.49 -0.26 2.56 16 11 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 12 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 13 Si 0.86 21.06 27.47 -169.99 -4.67 16.39 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 17 C 0.07 1.15 4.87 -3.82 -0.02 1.13 16 18 C -0.10 -1.55 3.53 -89.81 -0.32 -1.87 16 19 C -0.14 -2.24 5.68 -25.83 -0.15 -2.38 16 20 C -0.14 -1.91 8.09 -25.82 -0.21 -2.12 16 21 C -0.14 -1.77 7.65 -25.91 -0.20 -1.96 16 22 C -0.19 -4.27 7.72 29.02 0.22 -4.05 16 23 S 0.10 2.01 21.63 -107.50 -2.33 -0.31 16 24 C 0.10 1.39 6.20 -67.93 -0.42 0.97 16 25 C -0.19 -1.97 9.72 -26.73 -0.26 -2.23 16 26 C -0.19 -2.44 10.12 -26.73 -0.27 -2.71 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.31 7.62 -51.93 -0.40 0.91 16 29 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 30 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 31 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 32 H 0.04 1.00 3.45 -51.93 -0.18 0.82 16 33 H -0.02 -0.56 7.41 -51.93 -0.38 -0.95 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.06 1.00 7.93 -51.93 -0.41 0.59 16 36 H 0.02 0.36 7.85 -51.93 -0.41 -0.05 16 37 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 39 H 0.07 1.32 7.25 -51.93 -0.38 0.94 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 44 H 0.16 3.49 8.02 -52.49 -0.42 3.07 16 45 H 0.12 1.70 7.30 -51.93 -0.38 1.32 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 0.98 6.46 -51.93 -0.34 0.64 16 48 H 0.10 1.33 8.12 -51.93 -0.42 0.91 16 49 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -30.45 387.17 -12.65 -43.11 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.08 Total: 4.87 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.41 Total: -11.23 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -1.00 Total: -58.67 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.33 Total: -0.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.45 -12.65 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095968216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.742 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds