Wall clock time and date at job start Tue Mar 31 2020 05:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47094 * 240.00482 * 3 2 1 5 5 H 1.48498 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 119.99761 * 3 2 1 7 7 C 1.38949 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00329 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00240 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00275 * 359.72720 * 10 9 7 12 12 C 1.50701 * 120.00206 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47661 * 179.72565 * 12 10 9 14 14 C 1.46897 * 111.00226 * 174.60160 * 13 12 10 15 15 H 1.09002 * 109.47307 * 325.29073 * 14 13 12 16 16 C 1.50700 * 109.46760 * 85.28413 * 14 13 12 17 17 C 1.38248 * 119.98808 * 39.72426 * 16 14 13 18 18 C 1.38209 * 120.01228 * 179.72163 * 17 16 14 19 19 C 1.38352 * 119.98793 * 0.55541 * 18 17 16 20 20 Cl 1.73604 * 120.01207 * 179.74612 * 19 18 17 21 21 C 1.38349 * 119.97455 * 359.71945 * 19 18 17 22 22 C 1.38214 * 119.98296 * 0.02562 * 21 19 18 23 23 C 1.52991 * 109.47087 * 205.28418 * 14 13 12 24 24 C 1.54265 * 110.03393 * 174.59931 * 23 14 13 25 25 C 1.54965 * 104.16441 * 217.13617 * 24 23 14 26 26 C 1.54893 * 102.77235 * 37.88435 * 25 24 23 27 27 C 1.53874 * 110.03611 * 57.38034 * 23 14 13 28 28 H 0.97002 * 119.99817 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99909 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.46917 * 299.72644 * 12 10 9 31 31 H 1.09001 * 109.46989 * 59.71852 * 12 10 9 32 32 H 1.00894 * 110.99566 * 298.56086 * 13 12 10 33 33 H 1.08001 * 119.98784 * 0.02562 * 17 16 14 34 34 H 1.08003 * 120.00933 * 180.26998 * 18 17 16 35 35 H 1.08002 * 120.01043 * 179.97438 * 21 19 18 36 36 H 1.08011 * 119.98815 * 180.02562 * 22 21 19 37 37 H 1.09001 * 110.01610 * 295.99002 * 23 14 13 38 38 H 1.09002 * 110.48454 * 335.78467 * 24 23 14 39 39 H 1.08998 * 110.48879 * 98.42173 * 24 23 14 40 40 H 1.09002 * 110.71983 * 279.57608 * 25 24 23 41 41 H 1.08995 * 110.92291 * 156.29114 * 25 24 23 42 42 H 1.09001 * 110.48318 * 203.40253 * 26 25 24 43 43 H 1.09000 * 110.59636 * 80.82119 * 26 25 24 44 44 H 1.08995 * 110.03235 * 238.56813 * 27 23 14 45 45 H 1.09000 * 110.02699 * 359.95042 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0075 12 6 1.2438 -4.8629 -0.0022 13 7 2.1983 -5.9796 -0.0099 14 6 1.5032 -7.2673 0.1183 15 1 0.6343 -7.1483 0.7656 16 6 1.0554 -7.7340 -1.2428 17 6 1.8801 -7.5605 -2.3387 18 6 1.4723 -7.9935 -3.5862 19 6 0.2337 -8.5904 -3.7403 20 17 -0.2819 -9.1286 -5.3082 21 6 -0.5936 -8.7587 -2.6442 22 6 -0.1825 -8.3300 -1.3962 23 6 2.4534 -8.3015 0.7250 24 6 1.6989 -9.6205 0.9909 25 6 2.3041 -10.1426 2.3186 26 6 2.5115 -8.8426 3.1349 27 6 2.9704 -7.8073 2.0874 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6211 -4.9234 0.8905 31 1 0.6130 -4.9179 -0.8894 32 1 2.7718 -5.9592 -0.8398 33 1 2.8453 -7.0909 -2.2190 34 1 2.1185 -7.8619 -4.4416 35 1 -1.5608 -9.2241 -2.7639 36 1 -0.8281 -8.4616 -0.5404 37 1 3.2908 -8.4799 0.0503 38 1 0.6314 -9.4327 1.1063 39 1 1.8771 -10.3313 0.1840 40 1 3.2563 -10.6416 2.1384 41 1 1.6092 -10.8111 2.8267 42 1 3.2822 -8.9866 3.8921 43 1 1.5766 -8.5277 3.5985 44 1 4.0585 -7.7466 2.0742 45 1 2.5449 -6.8301 2.3159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095984948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:34 Heat of formation + Delta-G solvation = -34.219097 kcal Electronic energy + Delta-G solvation = -26490.649541 eV Core-core repulsion = 22725.702458 eV Total energy + Delta-G solvation = -3764.947083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23478 -38.34376 -37.97087 -36.65657 -35.23771 -33.84584 -31.51639 -31.27515 -30.99192 -29.18072 -28.54039 -26.57304 -24.57279 -23.75158 -22.80612 -21.23962 -20.60479 -19.65311 -19.06673 -17.89271 -17.55313 -16.21595 -16.06267 -15.69981 -15.36144 -15.13297 -14.78076 -14.44555 -14.14137 -13.85699 -13.78171 -13.70145 -13.51447 -13.24979 -13.23904 -12.36269 -12.27221 -12.11820 -11.82199 -11.54268 -11.50387 -11.40936 -11.11423 -11.03196 -10.99683 -10.95930 -10.89577 -10.77536 -10.64347 -10.43552 -10.29776 -10.20163 -9.48602 -9.23135 -8.73412 -8.50007 -8.06818 -7.94715 -6.40430 -3.81216 0.94420 1.10322 1.94502 3.20871 3.26450 3.30773 3.42643 3.92805 4.03841 4.27033 4.45289 4.59623 4.64938 4.68928 4.80023 4.82797 5.10701 5.13186 5.17025 5.25983 5.28891 5.45560 5.50993 5.54488 5.60794 5.63061 5.68054 5.73326 5.78074 5.81879 5.88206 5.91567 5.99912 6.03256 6.05376 6.15953 6.23610 6.26261 6.35205 6.45705 6.59067 6.60933 7.19052 7.56051 7.59614 8.07319 8.62809 9.19225 9.55916 10.07565 10.77275 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.008808 B = 0.003221 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.021564 B = 8691.887599 C =11209.467748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.653 5.653 14 C 0.130 3.870 15 H 0.088 0.912 16 C -0.099 4.099 17 C -0.104 4.104 18 C -0.104 4.104 19 C -0.039 4.039 20 Cl -0.078 7.078 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.071 4.071 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.109 4.109 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.348 0.652 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -21.628 -1.944 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.466 6.466 12 C -0.083 4.083 13 N -0.285 5.285 14 C 0.020 3.980 15 H 0.106 0.894 16 C -0.101 4.101 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.066 4.066 20 Cl -0.049 7.049 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.090 4.090 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.513 -21.408 -1.412 21.507 hybrid contribution -0.770 0.773 -1.194 1.617 sum -2.283 -20.635 -2.605 20.924 Atomic orbital electron populations 1.69604 1.05929 1.28227 1.50601 1.25249 0.95617 0.99681 0.97343 0.85930 0.78775 0.80522 0.79070 1.19927 1.20994 1.19886 1.19648 0.93325 0.82262 1.47674 0.87998 1.41853 1.09168 1.04599 1.64460 1.19781 0.88381 0.84631 0.84444 1.90521 1.13707 1.87073 1.55282 1.21720 0.94278 0.91100 1.01207 1.60269 1.21880 0.99524 1.46822 1.20831 0.96527 0.89687 0.90980 0.89419 1.20968 0.94320 0.97613 0.97205 1.20988 1.00247 0.99385 0.91600 1.21030 0.94790 0.98194 0.98299 1.20917 0.96110 1.02968 0.86591 1.98366 1.90830 1.88875 1.26801 1.21032 0.99609 1.00635 0.91503 1.21018 0.95936 0.98178 0.96715 1.21692 0.97093 0.92861 0.97392 1.22421 0.99628 0.96308 0.97166 1.22493 1.00457 0.97295 0.95955 1.22417 1.00970 0.95264 0.97889 1.22045 1.00789 0.99285 0.92544 0.91846 0.77517 0.89632 0.93873 0.83024 0.84860 0.84972 0.85119 0.85161 0.91128 0.91669 0.92033 0.91811 0.92048 0.92134 0.91945 0.92016 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.30 7.83 -10.99 -0.09 10.21 16 11 O -0.58 -15.56 15.89 5.55 0.09 -15.47 16 12 C 0.05 0.85 5.99 -4.97 -0.03 0.82 16 13 N -0.65 -9.84 4.98 -109.22 -0.54 -10.38 16 14 C 0.13 1.50 1.52 -68.87 -0.10 1.40 16 15 H 0.09 0.99 7.49 -51.93 -0.39 0.60 16 16 C -0.10 -1.08 4.35 -104.62 -0.46 -1.54 16 17 C -0.10 -1.17 9.12 -39.59 -0.36 -1.53 16 18 C -0.10 -1.13 9.83 -39.55 -0.39 -1.52 16 19 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 20 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 21 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 22 C -0.10 -0.98 9.24 -39.59 -0.37 -1.35 16 23 C -0.07 -0.76 2.67 -89.51 -0.24 -0.99 16 24 C -0.12 -1.05 5.67 -25.03 -0.14 -1.19 16 25 C -0.12 -1.06 6.91 -24.70 -0.17 -1.24 16 26 C -0.13 -1.23 6.83 -25.07 -0.17 -1.40 16 27 C -0.11 -1.26 6.17 -25.62 -0.16 -1.42 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 30 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 31 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.35 5.42 6.23 -39.29 -0.24 5.18 16 33 H 0.13 1.47 6.50 -52.49 -0.34 1.13 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.04 8.04 -52.48 -0.42 0.62 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.55 7.61 -51.93 -0.40 0.16 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.10 7.28 -51.93 -0.38 0.73 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -30.18 382.13 -10.75 -40.93 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.64 Total: 13.42 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -3.55 Total: -9.87 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.12 Total: -48.54 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.09 Total: -15.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.18 -10.75 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095984948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.710 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds