Wall clock time and date at job start Tue Mar 31 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86809 * 119.99862 * 2 1 4 4 H 1.48502 * 109.46812 * 269.99543 * 3 2 1 5 5 H 1.48498 * 109.47344 * 29.99488 * 3 2 1 6 6 H 1.48502 * 109.47015 * 149.99927 * 3 2 1 7 7 C 1.38943 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99949 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.34783 * 119.99751 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00013 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99677 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46754 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99372 * 177.99361 * 13 12 10 15 15 H 1.08992 * 109.47452 * 358.84929 * 14 13 12 16 16 C 1.50695 * 109.46722 * 238.84734 * 14 13 12 17 17 C 1.38240 * 119.98941 * 319.73280 * 16 14 13 18 18 C 1.38219 * 120.01224 * 179.72749 * 17 16 14 19 19 C 1.38352 * 119.98752 * 0.54430 * 18 17 16 20 20 Cl 1.73596 * 120.01628 * 179.70933 * 19 18 17 21 21 C 1.38349 * 119.97355 * 359.72332 * 19 18 17 22 22 C 1.38217 * 119.98669 * 0.02562 * 21 19 18 23 23 C 1.53005 * 109.46935 * 118.85377 * 14 13 12 24 24 C 1.54267 * 110.03104 * 300.93425 * 23 14 13 25 25 C 1.54888 * 104.19513 * 217.10935 * 24 23 14 26 26 C 1.54892 * 102.74903 * 37.93838 * 25 24 23 27 27 C 1.53874 * 110.03247 * 183.76851 * 23 14 13 28 28 H 0.97006 * 119.99799 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00474 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47094 * 60.00372 * 12 10 9 31 31 H 1.09005 * 109.47143 * 300.00278 * 12 10 9 32 32 H 1.00901 * 110.99435 * 301.94022 * 13 12 10 33 33 H 1.08003 * 119.99489 * 359.97438 * 17 16 14 34 34 H 1.07999 * 120.00538 * 180.26967 * 18 17 16 35 35 H 1.08004 * 120.01285 * 179.97438 * 21 19 18 36 36 H 1.08006 * 119.99528 * 180.02562 * 22 21 19 37 37 H 1.08995 * 110.01758 * 62.37419 * 23 14 13 38 38 H 1.09005 * 110.48401 * 335.78075 * 24 23 14 39 39 H 1.08996 * 110.48848 * 98.42652 * 24 23 14 40 40 H 1.09001 * 110.75401 * 279.62672 * 25 24 23 41 41 H 1.09000 * 110.75759 * 156.25830 * 25 24 23 42 42 H 1.08999 * 110.48335 * 203.38094 * 26 25 24 43 43 H 1.09000 * 110.59566 * 80.79940 * 26 25 24 44 44 H 1.08998 * 110.03316 * 238.56999 * 27 23 14 45 45 H 1.09007 * 110.02653 * 359.97438 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6528 0.6999 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3705 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5608 -2.3704 0.0021 13 7 6.0505 -3.7554 0.0027 14 6 7.5182 -3.7948 -0.0453 15 1 7.9077 -2.7779 -0.0911 16 6 7.9605 -4.5577 -1.2673 17 6 7.2856 -5.7022 -1.6491 18 6 7.6873 -6.3991 -2.7731 19 6 8.7720 -5.9574 -3.5096 20 17 9.2819 -6.8364 -4.9171 21 6 9.4504 -4.8151 -3.1239 22 6 9.0446 -4.1161 -2.0027 23 6 8.0511 -4.4890 1.2098 24 6 7.5858 -3.7314 2.4705 25 6 8.7928 -3.8246 3.4367 26 6 10.0053 -3.6764 2.4843 27 6 9.5894 -4.4540 1.2186 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3632 0.0007 30 1 5.9241 -1.8558 0.8917 31 1 5.9242 -1.8573 -0.8883 32 1 5.7011 -4.2620 0.8024 33 1 6.4419 -6.0496 -1.0714 34 1 7.1573 -7.2908 -3.0738 35 1 10.2976 -4.4700 -3.6982 36 1 9.5739 -3.2240 -1.7016 37 1 7.7008 -5.5206 1.2427 38 1 7.3681 -2.6904 2.2314 39 1 6.7110 -4.2150 2.9051 40 1 8.8120 -4.7919 3.9387 41 1 8.7702 -3.0118 4.1627 42 1 10.8961 -4.1200 2.9290 43 1 10.1806 -2.6271 2.2471 44 1 9.9857 -5.4687 1.2567 45 1 9.9563 -3.9429 0.3285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095984949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:36 Heat of formation + Delta-G solvation = -28.842686 kcal Electronic energy + Delta-G solvation = -26506.589561 eV Core-core repulsion = 22741.875616 eV Total energy + Delta-G solvation = -3764.713944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19188 -38.58136 -38.12846 -36.56233 -35.23601 -33.91476 -31.77972 -31.51014 -31.09529 -29.16286 -28.74161 -26.78501 -24.60418 -23.53398 -22.74089 -21.21250 -20.81729 -19.90406 -19.28772 -18.32897 -17.21959 -16.50354 -16.04943 -15.81928 -15.45189 -15.14711 -14.84866 -14.72153 -14.11311 -13.82595 -13.79511 -13.56271 -13.45104 -13.42834 -13.14261 -12.56964 -12.40937 -12.17638 -12.00119 -11.84874 -11.62311 -11.46324 -11.35002 -11.25629 -11.17723 -11.12622 -10.90899 -10.86296 -10.79390 -10.60898 -10.57800 -9.98249 -9.57767 -9.07167 -8.65095 -8.56556 -8.20361 -8.15511 -6.31611 -3.83016 1.08289 1.26162 2.03955 3.01113 3.06218 3.14278 3.54702 3.73292 4.00358 4.09723 4.32876 4.39606 4.54154 4.69868 4.78838 4.82084 4.95472 5.03374 5.15532 5.21903 5.23886 5.29178 5.37448 5.38954 5.44832 5.48273 5.55377 5.62232 5.64793 5.70957 5.73861 5.80054 5.88656 5.89405 5.93804 6.01317 6.10622 6.15383 6.18526 6.24512 6.50681 6.76034 7.08785 7.52910 7.57830 8.13982 8.59222 8.94603 9.41959 9.82194 10.81555 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003122 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.047992 B = 8967.871373 C =10911.749679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.563 6.563 12 C 0.049 3.951 13 N -0.660 5.660 14 C 0.129 3.871 15 H 0.074 0.926 16 C -0.056 4.056 17 C -0.071 4.071 18 C -0.114 4.114 19 C -0.039 4.039 20 Cl -0.082 7.082 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.118 4.118 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.354 0.646 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.406 -7.430 0.527 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.445 6.445 12 C -0.084 4.084 13 N -0.292 5.292 14 C 0.019 3.981 15 H 0.092 0.908 16 C -0.057 4.057 17 C -0.090 4.090 18 C -0.132 4.132 19 C -0.066 4.066 20 Cl -0.054 7.054 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.717 -8.176 -0.272 25.088 hybrid contribution 0.768 1.680 0.604 1.943 sum 24.485 -6.496 0.331 25.334 Atomic orbital electron populations 1.69624 1.05642 1.27476 1.49424 1.25035 0.95482 0.97952 0.97679 0.86680 0.79730 0.84097 0.78914 1.19598 1.20203 1.19550 1.19425 0.79244 0.96612 1.48025 0.86288 1.42209 1.07530 1.06159 1.67166 1.19689 0.88130 0.84561 0.83968 1.90566 1.69411 1.30909 1.53611 1.21823 0.95159 0.90247 1.01153 1.60031 1.05704 1.13377 1.50119 1.20608 0.88611 0.97761 0.91120 0.90771 1.19971 0.94298 0.95207 0.96244 1.21016 0.98589 0.93894 0.95458 1.21102 0.95778 1.00917 0.95443 1.20903 0.98562 0.95840 0.91294 1.98356 1.90636 1.75799 1.40576 1.20913 1.00432 0.94386 0.97658 1.20947 0.97098 0.99893 0.94726 1.22288 0.95939 1.00319 0.93727 1.22514 0.98300 1.00624 0.95016 1.22464 0.94513 1.01658 0.97392 1.22368 0.97861 1.00287 0.95747 1.22193 0.94594 1.00597 0.98210 0.91621 0.79743 0.93626 0.89567 0.82523 0.84403 0.85209 0.85402 0.85584 0.90138 0.91419 0.91160 0.91509 0.91642 0.91911 0.91767 0.91820 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.30 -8.55 10.16 -14.94 -0.15 -8.71 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.59 -13.88 5.09 -10.96 -0.06 -13.93 16 10 C 0.45 9.96 7.82 -10.98 -0.09 9.87 16 11 O -0.56 -14.77 15.82 5.55 0.09 -14.68 16 12 C 0.05 0.77 5.82 -4.97 -0.03 0.74 16 13 N -0.66 -9.34 5.05 -109.21 -0.55 -9.89 16 14 C 0.13 1.39 1.69 -68.86 -0.12 1.28 16 15 H 0.07 0.76 7.40 -51.93 -0.38 0.38 16 16 C -0.06 -0.62 4.47 -104.62 -0.47 -1.09 16 17 C -0.07 -0.85 9.32 -39.59 -0.37 -1.22 16 18 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 19 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 20 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 21 C -0.12 -1.16 9.83 -39.55 -0.39 -1.55 16 22 C -0.11 -1.07 8.48 -39.59 -0.34 -1.41 16 23 C -0.10 -0.95 2.35 -89.50 -0.21 -1.16 16 24 C -0.13 -1.19 5.51 -25.07 -0.14 -1.33 16 25 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 26 C -0.13 -0.93 6.83 -25.08 -0.17 -1.11 16 27 C -0.12 -0.95 6.06 -25.62 -0.16 -1.10 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 29 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 30 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.35 5.16 7.27 -39.29 -0.29 4.88 16 33 H 0.14 1.71 7.73 -52.48 -0.41 1.31 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 36 H 0.13 0.99 7.68 -52.48 -0.40 0.59 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.68 6.87 -51.93 -0.36 0.32 16 39 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.53 5.91 -51.93 -0.31 0.23 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -31.50 376.93 -10.34 -41.83 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.53 Total: 13.03 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.52 Total: -9.28 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.17 Total: -48.76 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.50 -10.34 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095984949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.989 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds