Wall clock time and date at job start Tue Mar 31 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86809 * 119.99862 * 2 1 4 4 H 1.48502 * 109.46812 * 269.99543 * 3 2 1 5 5 H 1.48498 * 109.47344 * 29.99488 * 3 2 1 6 6 H 1.48502 * 109.47015 * 149.99927 * 3 2 1 7 7 C 1.38943 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99949 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.34783 * 119.99751 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00013 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99677 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46754 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99372 * 177.99361 * 13 12 10 15 15 H 1.08992 * 109.47452 * 358.84929 * 14 13 12 16 16 C 1.50695 * 109.46722 * 238.84734 * 14 13 12 17 17 C 1.38240 * 119.98941 * 319.73280 * 16 14 13 18 18 C 1.38219 * 120.01224 * 179.72749 * 17 16 14 19 19 C 1.38352 * 119.98752 * 0.54430 * 18 17 16 20 20 Cl 1.73596 * 120.01628 * 179.70933 * 19 18 17 21 21 C 1.38349 * 119.97355 * 359.72332 * 19 18 17 22 22 C 1.38217 * 119.98669 * 0.02562 * 21 19 18 23 23 C 1.53005 * 109.46935 * 118.85377 * 14 13 12 24 24 C 1.54267 * 110.03104 * 300.93425 * 23 14 13 25 25 C 1.54888 * 104.19513 * 217.10935 * 24 23 14 26 26 C 1.54892 * 102.74903 * 37.93838 * 25 24 23 27 27 C 1.53874 * 110.03247 * 183.76851 * 23 14 13 28 28 H 0.97006 * 119.99799 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00474 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47094 * 60.00372 * 12 10 9 31 31 H 1.09005 * 109.47143 * 300.00278 * 12 10 9 32 32 H 1.00901 * 110.99435 * 301.94022 * 13 12 10 33 33 H 1.08003 * 119.99489 * 359.97438 * 17 16 14 34 34 H 1.07999 * 120.00538 * 180.26967 * 18 17 16 35 35 H 1.08004 * 120.01285 * 179.97438 * 21 19 18 36 36 H 1.08006 * 119.99528 * 180.02562 * 22 21 19 37 37 H 1.08995 * 110.01758 * 62.37419 * 23 14 13 38 38 H 1.09005 * 110.48401 * 335.78075 * 24 23 14 39 39 H 1.08996 * 110.48848 * 98.42652 * 24 23 14 40 40 H 1.09001 * 110.75401 * 279.62672 * 25 24 23 41 41 H 1.09000 * 110.75759 * 156.25830 * 25 24 23 42 42 H 1.08999 * 110.48335 * 203.38094 * 26 25 24 43 43 H 1.09000 * 110.59566 * 80.79940 * 26 25 24 44 44 H 1.08998 * 110.03316 * 238.56999 * 27 23 14 45 45 H 1.09007 * 110.02653 * 359.97438 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6528 0.6999 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3705 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5608 -2.3704 0.0021 13 7 6.0505 -3.7554 0.0027 14 6 7.5182 -3.7948 -0.0453 15 1 7.9077 -2.7779 -0.0911 16 6 7.9605 -4.5577 -1.2673 17 6 7.2856 -5.7022 -1.6491 18 6 7.6873 -6.3991 -2.7731 19 6 8.7720 -5.9574 -3.5096 20 17 9.2819 -6.8364 -4.9171 21 6 9.4504 -4.8151 -3.1239 22 6 9.0446 -4.1161 -2.0027 23 6 8.0511 -4.4890 1.2098 24 6 7.5858 -3.7314 2.4705 25 6 8.7928 -3.8246 3.4367 26 6 10.0053 -3.6764 2.4843 27 6 9.5894 -4.4540 1.2186 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3632 0.0007 30 1 5.9241 -1.8558 0.8917 31 1 5.9242 -1.8573 -0.8883 32 1 5.7011 -4.2620 0.8024 33 1 6.4419 -6.0496 -1.0714 34 1 7.1573 -7.2908 -3.0738 35 1 10.2976 -4.4700 -3.6982 36 1 9.5739 -3.2240 -1.7016 37 1 7.7008 -5.5206 1.2427 38 1 7.3681 -2.6904 2.2314 39 1 6.7110 -4.2150 2.9051 40 1 8.8120 -4.7919 3.9387 41 1 8.7702 -3.0118 4.1627 42 1 10.8961 -4.1200 2.9290 43 1 10.1806 -2.6271 2.2471 44 1 9.9857 -5.4687 1.2567 45 1 9.9563 -3.9429 0.3285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095984949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:36 Heat of formation + Delta-G solvation = -48.129079 kcal Electronic energy + Delta-G solvation = -26507.425881 eV Core-core repulsion = 22741.875616 eV Total energy + Delta-G solvation = -3765.550265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06736 -40.12176 -39.09983 -37.37356 -36.38163 -35.76983 -33.74248 -32.57938 -31.92837 -29.99059 -29.40929 -28.18850 -26.02014 -24.70482 -23.63573 -22.02692 -21.46987 -21.31375 -20.64800 -20.05092 -18.15895 -17.71301 -17.13003 -16.99672 -16.60692 -16.23814 -16.03813 -15.85250 -15.49180 -14.89671 -14.82192 -14.74922 -14.38164 -14.33840 -14.24396 -14.13202 -13.92112 -13.40377 -13.09546 -12.89973 -12.82177 -12.41475 -12.40317 -12.28797 -12.04211 -11.96279 -11.89004 -11.84479 -11.70483 -11.63538 -11.50322 -11.46927 -11.26193 -10.41406 -10.23446 -9.89279 -9.43897 -9.28884 -8.40368 -6.01108 0.24540 0.44084 1.21450 1.30194 1.36430 1.44884 1.97932 2.23762 2.64165 2.81452 3.16220 3.38421 3.63271 3.71750 3.83351 3.95182 4.03925 4.10805 4.16323 4.27401 4.40639 4.45019 4.52641 4.57635 4.60986 4.61197 4.71068 4.75536 4.82762 4.88644 4.90489 5.05130 5.10338 5.13577 5.28021 5.31030 5.36242 5.40990 5.48070 5.52181 5.53425 5.63739 5.93108 5.94498 6.12749 6.40301 6.61150 6.89707 7.41489 7.98575 8.77427 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003122 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.047992 B = 8967.871373 C =10911.749679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.327 4.327 8 H 0.054 0.946 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.612 6.612 12 C 0.064 3.936 13 N -0.677 5.677 14 C 0.136 3.864 15 H 0.092 0.908 16 C -0.063 4.063 17 C -0.088 4.088 18 C -0.125 4.125 19 C -0.050 4.050 20 Cl -0.080 7.080 21 C -0.114 4.114 22 C -0.103 4.103 23 C -0.097 4.097 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.114 4.114 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.348 0.652 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.539 -4.887 0.564 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.456 4.456 8 H 0.072 0.928 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.497 6.497 12 C -0.068 4.068 13 N -0.309 5.309 14 C 0.026 3.974 15 H 0.110 0.890 16 C -0.064 4.064 17 C -0.107 4.107 18 C -0.144 4.144 19 C -0.076 4.076 20 Cl -0.052 7.052 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.166 4.166 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.152 4.152 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.168 0.832 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 27.891 -5.649 -0.236 28.458 hybrid contribution -0.573 0.702 0.570 1.071 sum 27.318 -4.948 0.335 27.764 Atomic orbital electron populations 1.69812 1.08187 1.29200 1.50496 1.26118 0.96452 1.02733 0.96134 0.85374 0.79575 0.76731 0.79896 1.18298 1.20104 1.15201 1.18995 0.81582 0.94853 1.50205 0.92767 1.42034 1.05750 1.07651 1.67966 1.20998 0.90999 0.83251 0.80954 1.90548 1.71405 1.32782 1.54931 1.21739 0.89515 0.91813 1.03745 1.59991 1.08131 1.12511 1.50249 1.20650 0.86291 0.98805 0.91612 0.88977 1.20068 0.94815 0.94897 0.96596 1.20988 0.98836 0.94932 0.95930 1.21175 0.96342 1.01239 0.95643 1.21048 0.98675 0.96450 0.91461 1.98355 1.90537 1.75870 1.40390 1.21210 1.00633 0.93690 0.97749 1.21221 0.96419 1.00452 0.93999 1.22201 0.96997 0.99467 0.92990 1.22507 0.98439 1.00273 0.95376 1.22465 0.94228 1.01852 0.97384 1.22358 0.97712 1.00689 0.95078 1.22165 0.93189 1.00853 0.98979 0.91198 0.77515 0.90269 0.87190 0.83197 0.85970 0.85084 0.83340 0.82747 0.91339 0.91472 0.92557 0.91609 0.91176 0.91046 0.91013 0.91958 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 13.96 21.66 0.30 -56.28 16 2 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 3 Si 0.96 38.46 27.74 68.60 1.90 40.36 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 7 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 8 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 9 N -0.59 -27.52 5.09 -306.97 -1.56 -29.09 16 10 C 0.45 19.85 7.82 87.66 0.69 20.54 16 11 O -0.61 -33.49 15.82 -3.07 -0.05 -33.54 16 12 C 0.06 1.84 5.82 85.56 0.50 2.34 16 13 N -0.68 -18.37 5.05 -499.44 -2.52 -20.89 16 14 C 0.14 2.60 1.69 44.17 0.07 2.67 16 15 H 0.09 1.47 7.40 -2.39 -0.02 1.45 16 16 C -0.06 -1.27 4.47 -19.86 -0.09 -1.36 16 17 C -0.09 -2.10 9.32 22.27 0.21 -1.89 16 18 C -0.13 -2.84 9.83 22.29 0.22 -2.63 16 19 C -0.05 -1.04 6.32 22.32 0.14 -0.90 16 20 Cl -0.08 -1.59 28.96 -2.72 -0.08 -1.66 16 21 C -0.11 -1.99 9.83 22.29 0.22 -1.77 16 22 C -0.10 -1.69 8.48 22.27 0.19 -1.50 16 23 C -0.10 -1.62 2.35 -10.07 -0.02 -1.64 16 24 C -0.13 -2.17 5.51 31.67 0.17 -2.00 16 25 C -0.12 -1.69 6.91 31.89 0.22 -1.47 16 26 C -0.12 -1.41 6.83 31.67 0.22 -1.20 16 27 C -0.11 -1.50 6.06 31.32 0.19 -1.31 16 28 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 29 H 0.39 14.87 5.76 -92.71 -0.53 14.34 16 30 H 0.08 1.81 7.16 -2.39 -0.02 1.79 16 31 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.35 10.18 7.27 -89.69 -0.65 9.53 16 33 H 0.12 3.21 7.73 -2.91 -0.02 3.19 16 34 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.15 1.65 7.68 -2.91 -0.02 1.63 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.14 6.87 -2.38 -0.02 1.13 16 39 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.90 5.91 -2.38 -0.01 0.88 16 Total: -1.00 -74.02 376.93 2.01 -72.01 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.23 Total: 39.89 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.24 Total: -10.79 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -3.78 Total: -106.26 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.36 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.66 kcal Total: -74.02 2.01 -72.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095984949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.882 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds