Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47420 * 2 1 4 4 H 1.08994 * 109.47204 * 304.99892 * 3 2 1 5 5 C 1.53003 * 109.47076 * 184.99858 * 3 2 1 6 6 N 1.46509 * 109.46901 * 65.00318 * 3 2 1 7 7 C 1.34772 * 119.99593 * 204.99918 * 6 3 2 8 8 O 1.21595 * 120.00186 * 4.97227 * 7 6 3 9 9 N 1.34781 * 119.99939 * 184.97181 * 7 6 3 10 10 C 1.47035 * 120.81123 * 174.49753 * 9 7 6 11 11 C 1.53382 * 109.17273 * 115.74373 * 10 9 7 12 12 C 1.50807 * 108.80159 * 45.39811 * 11 10 9 13 13 C 1.39388 * 127.66736 * 162.29907 * 12 11 10 14 14 C 1.50702 * 125.94122 * 359.59875 * 13 12 11 15 15 O 1.42901 * 109.47057 * 270.02388 * 14 13 12 16 16 C 1.34921 * 116.99700 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00352 * 359.97438 * 16 15 14 18 18 C 1.38640 * 119.99740 * 179.97438 * 16 15 14 19 19 N 1.31580 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47366 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47559 * 120.00201 * 20 18 16 23 23 H 1.48504 * 109.47215 * 239.99810 * 20 18 16 24 24 N 1.31054 * 108.12922 * 179.63511 * 13 12 11 25 25 N 1.40314 * 108.26825 * 359.97438 * 24 13 12 26 26 C 1.46506 * 126.11497 * 180.13535 * 25 24 13 27 27 C 1.34221 * 107.76789 * 0.14156 * 25 24 13 28 28 C 1.47404 * 120.80842 * 354.77753 * 9 7 6 29 29 H 1.09004 * 109.47134 * 59.99556 * 1 2 3 30 30 H 1.08997 * 109.47961 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47238 * 300.00228 * 1 2 3 32 32 H 1.08999 * 109.47238 * 239.99772 * 2 1 3 33 33 H 1.08999 * 109.46683 * 120.00510 * 2 1 3 34 34 H 1.08997 * 109.46760 * 60.00326 * 5 3 2 35 35 H 1.09001 * 109.46920 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.46842 * 300.00102 * 5 3 2 37 37 H 0.96992 * 120.00168 * 24.99760 * 6 3 2 38 38 H 1.08996 * 109.52130 * 235.64606 * 10 9 7 39 39 H 1.09002 * 109.52483 * 355.83687 * 10 9 7 40 40 H 1.09004 * 109.58149 * 285.60583 * 11 10 9 41 41 H 1.08997 * 109.69627 * 165.26498 * 11 10 9 42 42 H 1.09002 * 109.46523 * 30.01538 * 14 13 12 43 43 H 1.09000 * 109.47497 * 150.01653 * 14 13 12 44 44 H 0.97002 * 120.00102 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47087 * 270.00395 * 26 25 24 46 46 H 1.09004 * 109.46961 * 30.00393 * 26 25 24 47 47 H 1.09004 * 109.46666 * 150.00292 * 26 25 24 48 48 H 1.09000 * 109.90319 * 343.44603 * 28 9 7 49 49 H 1.09003 * 109.90340 * 104.58285 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 1.5258 3.4383 1.2997 8 8 1.6441 4.0968 0.2843 9 7 1.2678 4.0495 2.4729 10 6 1.2450 5.5165 2.5689 11 6 -0.1719 5.9753 2.9357 12 6 -0.6906 5.1051 4.0528 13 6 -1.7588 5.3657 4.9096 14 6 -2.6230 6.6002 4.8959 15 8 -2.0551 7.5888 5.7574 16 6 -2.7116 8.7632 5.8584 17 1 -3.6230 8.9220 5.3013 18 6 -2.2160 9.7661 6.6773 19 7 -1.1057 9.5724 7.3565 20 14 -3.1243 11.3923 6.8166 21 1 -4.3357 11.3578 5.9584 22 1 -3.5241 11.6168 8.2291 23 1 -2.2351 12.4957 6.3727 24 7 -1.8806 4.3508 5.7298 25 7 -0.8880 3.4100 5.4159 26 6 -0.6711 2.1266 6.0884 27 6 -0.1727 3.8963 4.3896 28 6 1.0079 3.2634 3.6925 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 3.8532 0.9569 -1.0571 35 1 3.9283 2.4718 -0.1252 36 1 3.9994 0.9051 0.7162 37 1 1.4872 1.5660 2.0463 38 1 1.9439 5.8421 3.3393 39 1 1.5309 5.9488 1.6100 40 1 -0.8230 5.8807 2.0666 41 1 -0.1483 7.0147 3.2630 42 1 -2.6798 6.9926 3.8805 43 1 -3.6244 6.3467 5.2439 44 1 -0.7592 10.2739 7.9297 45 1 0.0233 2.2635 6.9172 46 1 -1.6210 1.7505 6.4685 47 1 -0.2544 1.4110 5.3795 48 1 0.7726 2.2329 3.4266 49 1 1.8814 3.2894 4.3440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096259894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = 21.986523 kcal Electronic energy + Delta-G solvation = -29811.889607 eV Core-core repulsion = 25776.796464 eV Total energy + Delta-G solvation = -4035.093143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42756 -40.21011 -37.26895 -36.26400 -35.95246 -33.90310 -32.73612 -31.60493 -31.08063 -30.21074 -29.79408 -27.94030 -25.66462 -25.13279 -24.17919 -23.77749 -22.94239 -21.32409 -20.62553 -19.51589 -18.94713 -17.78017 -17.48973 -16.90846 -16.34550 -15.78280 -15.37229 -15.13555 -15.06632 -14.65303 -14.22316 -14.04371 -13.98948 -13.91430 -13.83121 -13.63847 -13.54456 -13.30837 -12.80712 -12.76325 -12.54740 -12.44649 -12.12235 -11.96516 -11.73593 -11.63174 -11.45835 -11.40616 -11.10221 -11.02847 -10.94671 -10.93072 -10.34564 -10.17321 -10.07793 -9.51792 -9.37554 -9.31809 -8.80044 -8.68790 -7.94100 -7.90408 -5.90966 -3.55438 2.03444 2.36067 2.69202 3.04651 3.09475 3.34183 3.38216 3.42204 3.62742 4.33703 4.36424 4.40693 4.58893 4.64636 4.65369 4.73012 5.05068 5.08659 5.13917 5.17088 5.20316 5.24960 5.27831 5.32391 5.37646 5.40697 5.41583 5.53733 5.56490 5.59393 5.71833 5.82497 5.85044 5.94086 5.95602 6.07298 6.20732 6.33426 6.34510 6.36382 6.49759 6.53424 6.63938 6.82338 7.02543 7.24211 7.51542 7.74389 8.09553 8.44894 8.45996 9.51518 10.18038 11.29822 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.002629 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.190978 B =10649.869392 C =11436.547489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.156 3.844 4 H 0.090 0.910 5 C -0.164 4.164 6 N -0.743 5.743 7 C 0.714 3.286 8 O -0.585 6.585 9 N -0.622 5.622 10 C 0.131 3.869 11 C -0.059 4.059 12 C -0.198 4.198 13 C 0.108 3.892 14 C 0.148 3.852 15 O -0.286 6.286 16 C -0.360 4.360 17 H 0.065 0.935 18 C 0.024 3.976 19 N -0.887 5.887 20 Si 0.926 3.074 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.275 5.275 25 N -0.370 5.370 26 C 0.104 3.896 27 C 0.041 3.959 28 C 0.190 3.810 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.392 0.608 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.257 0.743 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 -22.571 -12.097 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.051 3.949 4 H 0.108 0.892 5 C -0.223 4.223 6 N -0.401 5.401 7 C 0.415 3.585 8 O -0.462 6.462 9 N -0.359 5.359 10 C 0.009 3.991 11 C -0.098 4.098 12 C -0.210 4.210 13 C -0.057 4.057 14 C 0.068 3.932 15 O -0.200 6.200 16 C -0.439 4.439 17 H 0.083 0.917 18 C -0.174 4.174 19 N -0.530 5.530 20 Si 0.753 3.247 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.209 1.209 24 N -0.098 5.098 25 N -0.153 5.153 26 C -0.038 4.038 27 C -0.087 4.087 28 C 0.064 3.936 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.227 0.773 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.786 -22.660 -11.609 26.624 hybrid contribution -0.335 0.713 0.081 0.792 sum 7.451 -21.947 -11.528 25.886 Atomic orbital electron populations 1.21770 0.95233 1.01594 1.02458 1.21839 0.96629 0.95439 1.02949 1.20876 0.94643 0.92549 0.86803 0.89190 1.22209 0.95546 1.02740 1.01768 1.45380 1.75327 1.05355 1.13993 1.15724 0.77622 0.81933 0.83184 1.90918 1.58685 1.64223 1.32406 1.47288 1.74380 1.07542 1.06729 1.21618 0.97335 0.76884 1.03306 1.20393 0.94918 0.99393 0.95080 1.19649 1.00920 0.96534 1.03911 1.22080 0.96251 0.94918 0.92483 1.20263 0.92667 0.85070 0.95161 1.85717 1.49039 1.22658 1.62605 1.20857 1.06579 0.89915 1.26552 0.91703 1.24954 0.96905 0.98344 0.97244 1.70053 1.20643 1.33020 1.29253 0.85885 0.78799 0.82139 0.77875 1.19851 1.20949 1.20871 1.77588 1.09822 1.00410 1.21990 1.48009 1.24701 1.16495 1.26064 1.21767 1.03630 0.80758 0.97596 1.20672 0.97700 0.96613 0.93732 1.19945 0.93818 0.93677 0.86156 0.92421 0.92604 0.92676 0.90294 0.91545 0.91705 0.91932 0.92632 0.77271 0.90739 0.88282 0.91138 0.88587 0.93617 0.94362 0.93318 0.90772 0.89281 0.90243 0.89795 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.80 37.16 0.36 -0.59 16 2 C -0.13 -0.70 5.47 -26.73 -0.15 -0.85 16 3 C 0.16 1.23 2.62 -67.93 -0.18 1.05 16 4 H 0.09 0.91 7.51 -51.93 -0.39 0.52 16 5 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 6 N -0.74 -6.61 4.43 -58.67 -0.26 -6.87 16 7 C 0.71 9.14 8.27 -86.92 -0.72 8.42 16 8 O -0.58 -9.63 15.42 5.28 0.08 -9.55 16 9 N -0.62 -7.73 2.94 -179.21 -0.53 -8.26 16 10 C 0.13 1.82 6.36 -3.55 -0.02 1.80 16 11 C -0.06 -0.96 6.19 -27.63 -0.17 -1.13 16 12 C -0.20 -3.63 5.95 -105.03 -0.62 -4.25 16 13 C 0.11 2.33 6.84 -82.50 -0.56 1.77 16 14 C 0.15 3.48 6.43 36.01 0.23 3.71 16 15 O -0.29 -8.46 9.76 -16.48 -0.16 -8.62 16 16 C -0.36 -10.72 9.89 30.88 0.31 -10.41 16 17 H 0.07 1.80 7.77 -52.49 -0.41 1.40 16 18 C 0.02 0.71 5.49 -17.51 -0.10 0.62 16 19 N -0.89 -28.27 13.67 55.48 0.76 -27.51 16 20 Si 0.93 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 N -0.27 -5.67 12.59 33.61 0.42 -5.24 16 25 N -0.37 -5.75 4.00 -63.83 -0.26 -6.00 16 26 C 0.10 0.98 11.32 59.85 0.68 1.66 16 27 C 0.04 0.61 6.82 -82.29 -0.56 0.05 16 28 C 0.19 1.96 6.17 -4.55 -0.03 1.93 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.39 2.56 6.24 -40.82 -0.25 2.30 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.39 7.03 -51.93 -0.36 1.03 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 42 H 0.05 0.99 8.05 -51.93 -0.42 0.58 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.45 7.77 -51.93 -0.40 0.04 16 48 H 0.08 0.60 5.86 -51.93 -0.30 0.29 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -39.12 401.08 -8.10 -47.21 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.00 Total: -1.46 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.18 Total: 2.95 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.14 Total: -53.88 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.08 Total: -18.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.12 -8.10 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096259894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.201 kcal (2) G-P(sol) polarization free energy of solvation -39.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds