Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39720 * 125.78128 * 2 1 4 4 C 1.36166 * 107.86246 * 180.02562 * 3 2 1 5 5 N 1.39326 * 126.26756 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99895 * 0.02562 * 5 4 3 7 7 O 1.21707 * 120.00203 * 359.97438 * 6 5 4 8 8 C 1.46471 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.34849 * 119.99686 * 173.21634 * 8 6 5 10 10 C 1.47156 * 119.99968 * 349.02696 * 9 8 6 11 11 C 1.39938 * 120.02428 * 316.06055 * 10 9 8 12 12 C 1.37101 * 119.98043 * 179.76383 * 11 10 9 13 13 C 1.39778 * 120.02270 * 0.53204 * 12 11 10 14 14 C 1.43197 * 119.98580 * 179.71747 * 13 12 11 15 15 N 8.17515 * 76.98900 * 345.89535 * 2 1 3 16 16 C 1.39781 * 120.03643 * 359.69908 * 13 12 11 17 17 C 1.37102 * 120.01966 * 0.04142 * 16 13 12 18 18 N 1.35817 * 107.46892 * 359.97438 * 4 3 2 19 19 C 1.46494 * 126.09752 * 180.02562 * 18 4 3 20 20 C 1.50702 * 109.46899 * 269.99673 * 19 18 4 21 21 H 1.08007 * 120.00125 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99953 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00002 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99630 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47426 * 90.00098 * 24 22 20 26 26 H 1.48503 * 109.46660 * 209.99878 * 24 22 20 27 27 H 1.48499 * 109.47180 * 329.99674 * 24 22 20 28 28 N 1.30834 * 125.77556 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47251 * 269.98923 * 1 2 3 30 30 H 1.09005 * 109.46766 * 29.98147 * 1 2 3 31 31 H 1.08997 * 109.47499 * 149.98823 * 1 2 3 32 32 H 1.08009 * 126.06772 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00498 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.00090 * 353.22237 * 8 6 5 35 35 H 1.07995 * 119.99680 * 169.03448 * 9 8 6 36 36 H 1.08003 * 120.01036 * 359.97438 * 11 10 9 37 37 H 1.08004 * 119.99094 * 180.24977 * 12 11 10 38 38 H 1.07994 * 119.99133 * 180.02562 * 16 13 12 39 39 H 1.08005 * 120.01541 * 179.97438 * 17 16 13 40 40 H 1.09002 * 109.47380 * 29.99141 * 19 18 4 41 41 H 1.09003 * 109.47482 * 149.99823 * 19 18 4 42 42 H 0.97000 * 119.99462 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6195 0.7145 -0.0006 5 7 4.7493 1.5298 -0.0013 6 6 4.6128 2.8706 -0.0009 7 8 3.5026 3.3693 -0.0004 8 6 5.8006 3.7277 -0.0011 9 6 5.6687 5.0626 -0.1387 10 6 4.3713 5.6376 -0.5281 11 6 3.6241 5.0484 -1.5542 12 6 2.4132 5.5819 -1.9131 13 6 1.9300 6.7205 -1.2620 14 6 0.6680 7.2806 -1.6416 15 7 -0.3336 7.7251 -1.9411 16 6 2.6779 7.3126 -0.2402 17 6 3.8866 6.7773 0.1236 18 7 3.6088 -0.6436 -0.0004 19 6 4.7857 -1.5159 -0.0003 20 6 5.1891 -1.8154 -1.4211 21 1 4.6254 -1.3972 -2.2421 22 6 6.2784 -2.6222 -1.6730 23 7 6.9651 -3.1309 -0.6734 24 14 6.7788 -2.9927 -3.4342 25 1 7.7448 -1.9659 -3.9009 26 1 7.4134 -4.3339 -3.4967 27 1 5.5762 -2.9730 -4.3051 28 7 2.2718 -1.0615 -0.0005 29 1 -0.3634 -0.0002 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5140 32 1 1.9874 2.1598 -0.0004 33 1 5.6342 1.1325 -0.0013 34 1 6.7820 3.2905 0.1089 35 1 6.5153 5.7098 0.0369 36 1 3.9995 4.1717 -2.0610 37 1 1.8345 5.1250 -2.7022 38 1 2.3038 8.1920 0.2626 39 1 4.4646 7.2350 0.9128 40 1 5.6077 -1.0172 0.5133 41 1 4.5477 -2.4472 0.5138 42 1 7.7316 -3.6982 -0.8507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096310846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = 125.525890 kcal Electronic energy + Delta-G solvation = -27401.902565 eV Core-core repulsion = 23542.775051 eV Total energy + Delta-G solvation = -3859.127514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95487 -39.98301 -38.87957 -36.63801 -34.85913 -34.10101 -33.74995 -32.09570 -31.33700 -30.44667 -29.15242 -28.24070 -26.06372 -25.10464 -23.10063 -22.88896 -22.53648 -20.43777 -19.73288 -19.12362 -18.92077 -17.26482 -16.90669 -16.54836 -15.67229 -15.61475 -15.24345 -14.79452 -14.59173 -14.36272 -14.26758 -14.00308 -13.95839 -13.73128 -13.58909 -13.02634 -12.92670 -12.80201 -12.77101 -12.53424 -12.38823 -12.05986 -11.80861 -11.71702 -11.58534 -11.30558 -11.11744 -10.92232 -10.43467 -10.37131 -10.20938 -9.95548 -9.84393 -9.58625 -9.08677 -8.75941 -8.36071 -7.92677 -7.45984 -6.37071 -4.45682 0.18755 1.22955 1.33331 2.51919 2.55819 2.84035 2.88387 3.12473 3.20686 3.25304 3.29567 3.64956 3.71829 3.78289 3.80003 4.21141 4.39860 4.57887 4.69328 4.73097 4.96369 5.07333 5.12907 5.33748 5.34190 5.53592 5.59486 5.70663 5.76928 5.87657 6.01176 6.09908 6.14898 6.16442 6.17526 6.25125 6.35866 6.39608 6.63497 6.66090 6.80425 7.01304 7.32857 7.48938 7.55013 7.59683 7.76202 7.87919 8.26313 8.58711 8.67910 9.22160 10.70018 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.003086 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.162210 B = 9072.421705 C =10075.215277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.049 3.951 3 C -0.290 4.290 4 C 0.299 3.701 5 N -0.631 5.631 6 C 0.541 3.459 7 O -0.504 6.504 8 C -0.191 4.191 9 C -0.033 4.033 10 C -0.037 4.037 11 C -0.041 4.041 12 C -0.077 4.077 13 C -0.026 4.026 14 C 0.259 3.741 15 N -0.427 5.427 16 C -0.081 4.081 17 C -0.103 4.103 18 N -0.346 5.346 19 C 0.257 3.743 20 C -0.540 4.540 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 N -0.284 5.284 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.417 0.583 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 18.372 2.340 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.322 4.322 4 C 0.077 3.923 5 N -0.277 5.277 6 C 0.329 3.671 7 O -0.381 6.381 8 C -0.212 4.212 9 C -0.052 4.052 10 C -0.038 4.038 11 C -0.059 4.059 12 C -0.098 4.098 13 C -0.029 4.029 14 C -0.056 4.056 15 N -0.103 5.103 16 C -0.102 4.102 17 C -0.121 4.121 18 N -0.132 5.132 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.109 5.109 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.253 0.747 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.926 17.932 1.929 18.138 hybrid contribution 1.508 -0.170 -0.707 1.674 sum -0.418 17.762 1.222 17.809 Atomic orbital electron populations 1.20019 0.87685 1.02409 1.02021 1.22016 0.96489 0.91101 1.01978 1.21279 0.88987 1.00417 1.21512 1.18027 0.88006 0.83273 1.03017 1.42741 1.08329 1.05651 1.70970 1.18413 0.90223 0.81089 0.77326 1.90825 1.26422 1.73009 1.47804 1.22990 0.98175 0.94035 1.05991 1.22391 0.95969 0.94319 0.92553 1.19129 0.94308 0.94582 0.95738 1.20942 0.93273 0.96544 0.95161 1.20846 0.95947 0.93776 0.99181 1.16062 0.89096 0.97705 1.00042 1.25827 0.92967 0.93342 0.93461 1.81234 1.11306 1.09057 1.08657 1.20805 0.94302 0.99576 0.95492 1.20945 0.96073 0.95333 0.99771 1.49510 1.06422 1.02148 1.55150 1.19609 0.77843 0.89720 0.98881 1.21343 1.13307 1.31884 0.91344 0.91714 1.24936 0.95718 0.94855 0.98167 1.69914 1.19140 1.32624 1.31082 0.86359 0.78824 0.77895 0.83671 1.20304 1.20789 1.19608 1.77344 0.86222 1.21890 1.25484 0.91420 0.91187 0.91540 0.81993 0.74664 0.84044 0.83807 0.85567 0.85192 0.85300 0.85048 0.93845 0.92604 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.55 16 2 C 0.05 0.96 7.20 -82.47 -0.59 0.37 16 3 C -0.29 -5.62 9.58 -39.77 -0.38 -6.00 16 4 C 0.30 5.93 7.68 -152.78 -1.17 4.76 16 5 N -0.63 -9.99 5.41 -12.60 -0.07 -10.06 16 6 C 0.54 7.25 6.75 -12.94 -0.09 7.16 16 7 O -0.50 -7.59 9.28 5.18 0.05 -7.54 16 8 C -0.19 -1.72 9.91 -37.47 -0.37 -2.09 16 9 C -0.03 -0.24 9.80 -37.17 -0.36 -0.60 16 10 C -0.04 -0.33 4.53 -105.00 -0.48 -0.81 16 11 C -0.04 -0.43 6.56 -39.36 -0.26 -0.69 16 12 C -0.08 -0.79 9.71 -39.42 -0.38 -1.17 16 13 C -0.03 -0.25 5.74 -106.82 -0.61 -0.87 16 14 C 0.26 2.98 15.32 -22.48 -0.34 2.64 16 15 N -0.43 -5.82 18.54 41.83 0.78 -5.05 16 16 C -0.08 -0.67 9.71 -39.42 -0.38 -1.05 16 17 C -0.10 -0.79 9.75 -39.35 -0.38 -1.18 16 18 N -0.35 -7.86 3.62 -61.46 -0.22 -8.08 16 19 C 0.26 6.25 6.02 -5.20 -0.03 6.21 16 20 C -0.54 -14.13 9.39 -34.44 -0.32 -14.45 16 21 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 22 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 24 Si 0.91 20.17 29.54 -169.99 -5.02 15.15 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 N -0.28 -6.49 12.56 33.64 0.42 -6.07 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.16 3.00 5.82 -52.48 -0.31 2.70 16 33 H 0.42 6.09 7.97 -40.82 -0.33 5.77 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.13 1.41 7.03 -52.48 -0.37 1.04 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.04 1.01 7.52 -51.93 -0.39 0.62 16 41 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -32.04 374.43 -8.32 -40.35 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.74 Total: 5.38 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -5.89 Total: -6.67 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 1.64 Total: -52.31 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.05 Total: -7.54 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.04 -8.32 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096310846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.880 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds