Wall clock time and date at job start Tue Mar 31 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35954 * 116.99536 * 2 1 4 4 C 1.38113 * 120.00682 * 0.02562 * 3 2 1 5 5 C 1.39912 * 119.84682 * 180.02562 * 4 3 2 6 6 C 1.47056 * 120.07842 * 180.02562 * 5 4 3 7 7 C 1.34873 * 119.99993 * 133.83544 * 6 5 4 8 8 C 1.46419 * 119.99718 * 348.68592 * 7 6 5 9 9 N 1.31369 * 125.03147 * 173.06861 * 8 7 6 10 10 C 1.35619 * 108.73380 * 179.97438 * 9 8 7 11 11 C 1.39795 * 133.60960 * 180.02562 * 10 9 8 12 12 C 1.37659 * 119.72557 * 180.02562 * 11 10 9 13 13 C 1.38731 * 120.42909 * 0.02562 * 12 11 10 14 14 C 1.37996 * 120.50639 * 359.97438 * 13 12 11 15 15 C 1.38580 * 119.91212 * 0.02562 * 14 13 12 16 16 O 1.34805 * 125.03450 * 352.76353 * 8 7 6 17 17 C 1.39986 * 119.84587 * 0.02562 * 5 4 3 18 18 C 1.37691 * 120.00145 * 0.02562 * 17 5 4 19 19 C 1.39017 * 120.15705 * 359.68359 * 18 17 5 20 20 O 1.35654 * 119.92266 * 180.32153 * 19 18 17 21 21 C 1.34772 * 116.99846 * 354.18613 * 20 19 18 22 22 H 1.07996 * 120.00546 * 5.10788 * 21 20 19 23 23 C 1.38651 * 119.99780 * 185.10594 * 21 20 19 24 24 N 1.31564 * 119.99810 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47095 * 89.99910 * 25 23 21 27 27 H 1.48504 * 109.47126 * 209.99986 * 25 23 21 28 28 H 1.48499 * 109.46923 * 330.00122 * 25 23 21 29 29 H 1.09003 * 109.46734 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47487 * 60.00071 * 1 2 3 31 31 H 1.09005 * 109.47303 * 299.99772 * 1 2 3 32 32 H 1.08000 * 120.07538 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.00544 * 313.84415 * 6 5 4 34 34 H 1.07999 * 119.99958 * 168.67706 * 7 6 5 35 35 H 1.08007 * 120.13528 * 359.97019 * 11 10 9 36 36 H 1.08000 * 119.78547 * 179.97438 * 12 11 10 37 37 H 1.07997 * 119.74509 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.04117 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.99629 * 180.02562 * 17 5 4 40 40 H 1.08000 * 119.92000 * 179.97438 * 18 17 5 41 41 H 0.97005 * 119.99525 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2939 2.3697 0.0005 5 6 1.9325 3.6146 0.0000 6 6 1.1366 4.8512 0.0011 7 6 1.4529 5.8560 0.8435 8 6 2.4192 5.6316 1.9203 9 7 2.8957 6.5650 2.7126 10 6 3.7619 5.9944 3.5862 11 6 4.5458 6.4924 4.6311 12 6 5.3449 5.6352 5.3534 13 6 5.3772 4.2818 5.0506 14 6 4.6090 3.7755 4.0220 15 6 3.7982 4.6226 3.2835 16 8 2.9474 4.4358 2.2495 17 6 3.3308 3.6804 -0.0016 18 6 4.0745 2.5216 -0.0032 19 6 3.4401 1.2846 0.0034 20 8 4.1775 0.1460 0.0084 21 6 5.5128 0.2812 -0.1150 22 1 5.9569 1.2655 -0.1290 23 6 6.3163 -0.8434 -0.2241 24 7 5.7753 -2.0426 -0.2065 25 14 8.1671 -0.6561 -0.3944 26 1 8.7898 -0.6469 0.9536 27 1 8.7091 -1.7921 -1.1824 28 1 8.4734 0.6197 -1.0899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 0.2153 2.3147 0.0005 33 1 0.2987 4.9549 -0.6724 34 1 0.9935 6.8260 0.7235 35 1 4.5252 7.5455 4.8700 36 1 5.9512 6.0190 6.1605 37 1 6.0078 3.6192 5.6247 38 1 4.6397 2.7206 3.7930 39 1 3.8263 4.6400 -0.0016 40 1 5.1532 2.5738 -0.0049 41 1 6.3376 -2.8294 -0.2824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096400358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:06 Heat of formation + Delta-G solvation = 31.973751 kcal Electronic energy + Delta-G solvation = -28470.842536 eV Core-core repulsion = 24477.646883 eV Total energy + Delta-G solvation = -3993.195653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.89175 -39.67918 -37.93557 -37.62439 -36.61313 -34.55554 -33.53049 -32.31371 -30.51131 -29.84404 -29.41558 -28.29886 -26.54427 -25.48615 -24.09800 -22.92771 -21.89625 -21.64113 -21.47052 -19.61794 -18.15005 -17.78826 -17.63610 -16.80338 -16.54107 -16.10577 -15.71428 -15.26243 -15.19882 -14.64659 -14.58975 -14.08912 -13.94325 -13.71028 -13.57894 -13.50486 -13.31657 -12.72443 -12.46618 -12.34260 -12.15671 -11.81118 -11.69187 -11.45734 -11.44733 -11.33353 -11.16890 -11.00645 -10.65650 -10.47682 -10.46306 -10.27950 -9.71514 -9.54113 -8.92593 -8.63433 -8.12706 -7.87982 -6.90115 -6.56089 -4.09267 0.46611 1.32924 1.50458 2.09090 2.35484 2.82888 3.05923 3.07922 3.12730 3.14734 3.77360 3.87015 3.95145 3.96356 4.41327 4.66129 4.91937 4.93978 5.01186 5.07223 5.18757 5.24157 5.29592 5.43544 5.49248 5.51820 5.55470 5.60361 5.67356 5.81079 5.98425 6.03455 6.10447 6.20790 6.25496 6.30241 6.40324 6.43672 6.48860 6.55724 6.75049 6.84104 6.96939 7.12270 7.23478 7.50015 7.83110 7.84430 8.09874 8.87613 9.56960 10.60110 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.008914 B = 0.004660 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.545711 B = 6007.599946 C = 8163.918764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.138 4.138 5 C -0.166 4.166 6 C -0.004 4.004 7 C -0.141 4.141 8 C 0.296 3.704 9 N -0.494 5.494 10 C 0.025 3.975 11 C -0.074 4.074 12 C -0.122 4.122 13 C -0.104 4.104 14 C -0.084 4.084 15 C 0.006 3.994 16 O -0.179 6.179 17 C -0.044 4.044 18 C -0.219 4.219 19 C 0.149 3.851 20 O -0.153 6.153 21 C -0.390 4.390 22 H 0.094 0.906 23 C 0.042 3.958 24 N -0.849 5.849 25 Si 0.941 3.059 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 12.126 5.124 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.025 4.025 7 C -0.160 4.160 8 C 0.091 3.909 9 N -0.224 5.224 10 C -0.088 4.088 11 C -0.093 4.093 12 C -0.141 4.141 13 C -0.122 4.122 14 C -0.103 4.103 15 C -0.045 4.045 16 O -0.070 6.070 17 C -0.063 4.063 18 C -0.239 4.239 19 C 0.093 3.907 20 O -0.054 6.054 21 C -0.466 4.466 22 H 0.112 0.888 23 C -0.164 4.164 24 N -0.482 5.482 25 Si 0.765 3.235 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.190 1.190 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.120 0.880 40 H 0.151 0.849 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.970 12.039 5.129 14.384 hybrid contribution 0.860 -0.391 -0.073 0.948 sum -5.110 11.648 5.057 13.688 Atomic orbital electron populations 1.22894 0.80342 1.02981 1.00258 1.86240 1.19431 1.26301 1.89769 1.18024 0.89380 0.84490 1.07428 1.20714 0.98322 0.90737 1.05925 1.18157 0.92692 0.91635 1.14222 1.22368 0.95097 0.91289 0.93745 1.20896 0.99479 1.01067 0.94535 1.24234 0.93696 0.77676 0.95335 1.71027 1.13245 1.30785 1.07311 1.19924 0.99460 0.90819 0.98614 1.20256 0.95469 1.00175 0.93449 1.20968 0.99593 0.93319 1.00266 1.20995 0.98850 0.95615 0.96736 1.20046 0.95594 0.99848 0.94833 1.20562 0.96152 0.96092 0.91687 1.85165 1.47529 1.33266 1.40994 1.20654 0.92091 0.96955 0.96555 1.20733 1.00451 0.90706 1.11961 1.18807 0.88254 0.87579 0.96090 1.84008 1.19627 1.25667 1.76109 1.21434 0.78535 0.94884 1.51723 0.88820 1.25349 1.00638 0.94181 0.96267 1.70069 1.36412 0.97700 1.43971 0.85705 0.80265 0.78632 0.78863 1.19676 1.20068 1.19020 0.89050 0.93515 0.93607 0.86073 0.84781 0.82726 0.85195 0.84999 0.84530 0.84470 0.87959 0.84877 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.48 10.28 -34.21 -0.35 -6.83 16 3 C 0.05 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.14 -2.43 8.77 -39.00 -0.34 -2.77 16 5 C -0.17 -2.80 4.53 -105.04 -0.48 -3.28 16 6 C 0.00 -0.05 9.79 -37.20 -0.36 -0.41 16 7 C -0.14 -1.83 10.09 -37.48 -0.38 -2.21 16 8 C 0.30 4.88 6.83 -14.46 -0.10 4.78 16 9 N -0.49 -8.42 11.38 -9.58 -0.11 -8.53 16 10 C 0.03 0.42 7.23 -84.75 -0.61 -0.19 16 11 C -0.07 -0.99 10.10 -39.21 -0.40 -1.38 16 12 C -0.12 -1.38 10.02 -39.61 -0.40 -1.78 16 13 C -0.10 -1.27 10.03 -39.49 -0.40 -1.67 16 14 C -0.08 -1.30 10.06 -39.54 -0.40 -1.70 16 15 C 0.01 0.10 7.42 -38.60 -0.29 -0.18 16 16 O -0.18 -3.26 6.60 1.78 0.01 -3.25 16 17 C -0.04 -0.82 6.57 -39.13 -0.26 -1.08 16 18 C -0.22 -4.73 9.14 -39.49 -0.36 -5.09 16 19 C 0.15 3.59 6.67 -38.79 -0.26 3.33 16 20 O -0.15 -4.33 9.52 -14.10 -0.13 -4.47 16 21 C -0.39 -10.65 9.48 30.88 0.29 -10.36 16 22 H 0.09 2.36 5.19 -52.49 -0.27 2.09 16 23 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 24 N -0.85 -24.40 13.67 55.48 0.76 -23.64 16 25 Si 0.94 19.99 29.55 -169.99 -5.02 14.97 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 32 H 0.12 1.74 6.28 -52.49 -0.33 1.41 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.10 1.82 7.28 -52.49 -0.38 1.44 16 40 H 0.13 2.88 5.62 -52.49 -0.29 2.59 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -33.26 355.54 -7.75 -41.01 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.17 Total: 6.03 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -4.10 Total: -20.65 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.65 Total: -32.17 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.47 Total: -14.55 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.26 -7.75 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096400358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.986 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds