Wall clock time and date at job start Tue Mar 31 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21281 * 120.00208 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00070 * 180.02562 * 14 12 2 17 17 C 1.53005 * 109.47114 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47049 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47055 * 179.97438 * 18 17 16 20 20 O 1.21267 * 119.99741 * 0.02562 * 19 18 17 21 21 C 1.47089 * 120.00059 * 179.97438 * 19 18 17 22 22 C 1.39894 * 120.15803 * 359.72620 * 21 19 18 23 23 C 1.37815 * 119.84002 * 179.81033 * 22 21 19 24 24 C 1.38566 * 120.15728 * 0.44172 * 23 22 21 25 25 Cl 1.73602 * 119.83974 * 179.76249 * 24 23 22 26 26 C 1.38565 * 120.31754 * 359.79285 * 24 23 22 27 27 C 1.37810 * 120.16068 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 33 33 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 34 34 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 35 35 H 1.08999 * 109.47401 * 300.00043 * 16 14 12 36 36 H 1.09002 * 109.47014 * 60.00321 * 16 14 12 37 37 H 1.08998 * 109.47107 * 299.99720 * 17 16 14 38 38 H 1.08995 * 109.46781 * 59.99935 * 17 16 14 39 39 H 1.08998 * 109.47077 * 299.99910 * 18 17 16 40 40 H 1.09002 * 109.46906 * 60.00392 * 18 17 16 41 41 H 1.08010 * 120.08137 * 0.02562 * 22 21 19 42 42 H 1.07999 * 119.91827 * 180.18608 * 23 22 21 43 43 H 1.08000 * 119.91799 * 179.97438 * 26 24 23 44 44 H 1.08006 * 120.08017 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2950 -0.7459 -3.3141 17 6 4.1456 0.2156 -4.1466 18 6 4.6556 -0.5057 -5.3958 19 6 5.4929 0.4415 -6.2161 20 8 5.6651 1.5809 -5.8385 21 6 6.1021 -0.0165 -7.4742 22 6 5.9112 -1.3322 -7.9095 23 6 6.4818 -1.7531 -9.0912 24 6 7.2507 -0.8793 -9.8430 25 17 7.9707 -1.4201 -11.3273 26 6 7.4481 0.4239 -9.4156 27 6 6.8797 0.8601 -8.2384 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7091 1.1614 3.4844 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9865 34 1 1.5295 -2.5969 -0.4708 35 1 3.9003 -1.6025 -3.0179 36 1 2.4469 -1.0880 -3.9073 37 1 3.5406 1.0724 -4.4429 38 1 4.9935 0.5573 -3.5532 39 1 5.2607 -1.3624 -5.0992 40 1 3.8078 -0.8478 -5.9894 41 1 5.3151 -2.0155 -7.3226 42 1 6.3327 -2.7677 -9.4299 43 1 8.0489 1.0994 -10.0065 44 1 7.0348 1.8760 -7.9063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096408434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:52 Heat of formation + Delta-G solvation = -66.401676 kcal Electronic energy + Delta-G solvation = -25348.360782 eV Core-core repulsion = 21484.299496 eV Total energy + Delta-G solvation = -3864.061286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49139 -39.13903 -38.66954 -36.93392 -35.43192 -34.19524 -32.81551 -31.89176 -31.53897 -29.78726 -28.12980 -26.04239 -25.21559 -24.59798 -23.38489 -22.29661 -20.61786 -19.95468 -18.29104 -17.82783 -16.66611 -16.42246 -16.28705 -16.05532 -15.90092 -15.25692 -14.98599 -14.88006 -14.51734 -14.14019 -14.02292 -14.01479 -13.48653 -12.86851 -12.75968 -12.50722 -12.41459 -12.13911 -12.06884 -11.93832 -11.75808 -11.64702 -11.50700 -11.37203 -11.15936 -11.03260 -10.83469 -10.67882 -10.62781 -10.22548 -10.16506 -9.97165 -9.66011 -9.28513 -9.15575 -8.86106 -8.41353 -7.54781 -6.06217 -4.14126 0.05530 0.73082 1.53268 1.98690 3.18846 3.25988 3.33767 3.36217 3.45980 3.57681 4.04785 4.16397 4.29052 4.40615 4.65952 4.68286 4.77201 4.94375 4.96214 5.05676 5.20868 5.25222 5.36174 5.44955 5.48668 5.52312 5.61654 5.64752 5.65650 5.84565 5.91947 6.03741 6.13553 6.23647 6.37650 6.48555 6.77439 6.85718 7.09146 7.26780 7.46124 7.56913 7.73854 8.04099 8.22366 8.57715 8.85655 9.11813 9.52441 10.99127 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.001672 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.912467 B =16738.704506 C =16897.580448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.085 3.915 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.139 4.139 17 C -0.095 4.095 18 C -0.166 4.166 19 C 0.392 3.608 20 O -0.437 6.437 21 C -0.161 4.161 22 C -0.061 4.061 23 C -0.124 4.124 24 C -0.010 4.010 25 Cl -0.065 7.065 26 C -0.123 4.123 27 C -0.051 4.051 28 H 0.092 0.908 29 H 0.010 0.990 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 -8.683 -26.176 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.287 3.713 15 O -0.431 6.431 16 C -0.179 4.179 17 C -0.133 4.133 18 C -0.203 4.203 19 C 0.268 3.732 20 O -0.311 6.311 21 C -0.162 4.162 22 C -0.079 4.079 23 C -0.142 4.142 24 C -0.037 4.037 25 Cl -0.036 7.036 26 C -0.142 4.142 27 C -0.069 4.069 28 H 0.111 0.889 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.984 -7.395 -25.830 28.663 hybrid contribution 0.316 -0.824 0.643 1.091 sum 10.299 -8.219 -25.188 28.426 Atomic orbital electron populations 1.22072 0.98268 0.99299 1.00734 1.18931 0.90842 0.94598 0.80084 0.91934 1.21360 1.31689 1.12956 0.90336 0.92232 1.24910 0.94992 0.95000 0.98996 1.69889 1.36431 1.22599 1.23620 0.86442 0.78577 0.79565 0.82804 1.19843 1.20928 1.20955 1.48252 1.49191 1.11587 1.23673 1.21582 0.98661 0.83440 1.02270 1.20420 0.79247 0.87234 0.84427 1.90664 1.58276 1.17223 1.76906 1.21689 1.00701 0.99599 0.95910 1.21143 1.00562 0.97810 0.93809 1.22098 1.00589 0.99609 0.98029 1.22523 0.78120 0.88494 0.84026 1.90585 1.51684 1.20281 1.68547 1.20789 1.01987 0.95225 0.98232 1.21481 0.96774 0.94759 0.94877 1.21070 0.98024 1.00188 0.94960 1.21290 0.98070 0.94869 0.89455 1.98396 1.82021 1.90073 1.33090 1.21076 1.01419 0.94367 0.97312 1.21455 0.92896 1.00260 0.92334 0.88917 0.97079 0.95232 0.92752 0.94026 0.92824 0.90231 0.89459 0.89613 0.90588 0.90511 0.88122 0.88160 0.83741 0.84175 0.84267 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.17 16 2 C 0.26 6.60 2.64 -69.08 -0.18 6.41 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.22 7.99 -34.44 -0.28 -14.50 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.60 -12.60 2.75 -175.26 -0.48 -13.09 16 13 C 0.08 1.36 9.24 59.85 0.55 1.92 16 14 C 0.50 10.21 7.67 -10.99 -0.08 10.12 16 15 O -0.55 -13.83 15.31 5.56 0.09 -13.74 16 16 C -0.14 -1.87 4.25 -27.88 -0.12 -1.99 16 17 C -0.10 -1.27 3.79 -26.73 -0.10 -1.37 16 18 C -0.17 -1.42 4.31 -27.88 -0.12 -1.54 16 19 C 0.39 4.08 7.11 -30.72 -0.22 3.86 16 20 O -0.44 -6.29 15.97 5.57 0.09 -6.20 16 21 C -0.16 -1.34 5.87 -105.07 -0.62 -1.96 16 22 C -0.06 -0.36 9.47 -39.12 -0.37 -0.74 16 23 C -0.12 -0.73 9.81 -39.62 -0.39 -1.12 16 24 C -0.01 -0.07 6.33 -39.34 -0.25 -0.32 16 25 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 26 C -0.12 -0.86 9.81 -39.62 -0.39 -1.24 16 27 C -0.05 -0.42 9.60 -39.12 -0.38 -0.79 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 34 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 35 H 0.09 0.99 7.40 -51.93 -0.38 0.61 16 36 H 0.09 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 38 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 39 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.14 0.50 7.05 -52.48 -0.37 0.13 16 42 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 1.17 7.65 -52.48 -0.40 0.77 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -33.96 381.95 -9.38 -43.34 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.23 Total: -0.71 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.70 Total: -4.79 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.15 Total: -37.77 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.17 Total: -19.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.96 -9.38 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096408434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.065 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds