Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47187 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.47144 * 180.02562 * 18 17 16 20 20 O 1.21268 * 119.99634 * 0.02562 * 19 18 17 21 21 C 1.47085 * 119.99829 * 180.02562 * 19 18 17 22 22 C 1.39896 * 120.15827 * 359.72242 * 21 19 18 23 23 C 1.37819 * 119.83705 * 179.81035 * 22 21 19 24 24 C 1.38565 * 120.15921 * 0.44465 * 23 22 21 25 25 Cl 1.73597 * 119.84087 * 179.76676 * 24 23 22 26 26 C 1.38577 * 120.31884 * 359.78525 * 24 23 22 27 27 C 1.37809 * 120.15780 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 29 29 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 33 33 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 34 34 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 35 35 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 36 36 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 37 37 H 1.08999 * 109.47336 * 300.00124 * 17 16 14 38 38 H 1.08999 * 109.47211 * 60.00263 * 17 16 14 39 39 H 1.08999 * 109.47240 * 300.00374 * 18 17 16 40 40 H 1.08999 * 109.46674 * 60.00126 * 18 17 16 41 41 H 1.08000 * 120.08118 * 0.02891 * 22 21 19 42 42 H 1.07998 * 119.92154 * 180.18776 * 23 22 21 43 43 H 1.07998 * 119.91524 * 179.97438 * 26 24 23 44 44 H 1.08001 * 120.07919 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 6 4.6545 -0.5052 5.3966 19 6 5.4918 0.4421 6.2169 20 8 5.6640 1.5815 5.8392 21 6 6.1001 -0.0155 7.4754 22 6 5.8987 -1.3276 7.9171 23 6 6.4750 -1.7505 9.0954 24 6 7.2447 -0.8770 9.8468 25 17 7.9617 -1.4167 11.3328 26 6 7.4444 0.4255 9.4179 27 6 6.8776 0.8612 8.2397 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.9028 -0.5285 -4.4375 32 1 2.4157 -2.7377 0.9718 33 1 1.6237 -2.2852 2.5003 34 1 0.6904 -2.3002 0.9847 35 1 2.4470 -1.0879 3.9074 36 1 3.9003 -1.6024 3.0180 37 1 4.9935 0.5575 3.5533 38 1 3.5405 1.0726 4.4430 39 1 3.8063 -0.8466 5.9898 40 1 5.2594 -1.3622 5.1006 41 1 5.2961 -2.0085 7.3343 42 1 6.3230 -2.7640 9.4361 43 1 8.0452 1.1010 10.0088 44 1 7.0338 1.8767 7.9069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096408435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -56.924207 kcal Electronic energy + Delta-G solvation = -25408.963285 eV Core-core repulsion = 21545.312972 eV Total energy + Delta-G solvation = -3863.650312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51732 -39.29318 -38.71900 -36.94824 -35.65205 -34.27338 -32.75322 -31.92425 -31.55799 -30.55325 -28.38817 -26.23690 -25.13535 -24.65165 -23.41877 -22.40049 -20.71201 -19.98850 -18.33556 -17.86357 -17.00217 -16.48921 -16.32643 -16.12241 -15.95429 -15.50037 -15.09256 -14.96023 -14.56835 -14.18984 -14.15787 -13.96517 -13.50353 -12.98899 -12.88279 -12.79511 -12.44776 -12.26262 -12.21224 -12.09933 -11.97173 -11.88597 -11.73913 -11.58024 -11.39891 -11.21524 -11.11463 -10.71712 -10.67088 -10.13420 -10.00692 -9.67656 -9.64449 -9.33456 -9.30184 -8.98272 -8.63078 -7.70723 -6.14288 -4.14625 0.03493 0.71433 1.51977 1.96133 3.16875 3.23524 3.31040 3.37637 3.40741 3.52733 3.89320 4.14655 4.27456 4.35852 4.63029 4.66334 4.72372 4.89781 4.91709 5.03372 5.11860 5.19768 5.34326 5.37058 5.44472 5.46057 5.58424 5.60172 5.61631 5.78441 5.85751 5.97727 6.11817 6.17129 6.20616 6.26262 6.32930 6.42390 6.49666 6.84863 7.13552 7.23717 7.36887 7.64285 8.20675 8.49125 8.85723 8.94819 9.47123 10.98467 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.001707 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.012348 B =16394.474787 C =16745.878498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.228 3.772 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.590 5.590 13 C 0.087 3.913 14 C 0.503 3.497 15 O -0.552 6.552 16 C -0.138 4.138 17 C -0.096 4.096 18 C -0.166 4.166 19 C 0.392 3.608 20 O -0.438 6.438 21 C -0.162 4.162 22 C -0.060 4.060 23 C -0.124 4.124 24 C -0.010 4.010 25 Cl -0.064 7.064 26 C -0.123 4.123 27 C -0.051 4.051 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.123 -5.199 29.163 30.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.126 3.874 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.321 5.321 13 C -0.056 4.056 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.178 4.178 17 C -0.134 4.134 18 C -0.203 4.203 19 C 0.269 3.731 20 O -0.312 6.312 21 C -0.163 4.163 22 C -0.079 4.079 23 C -0.142 4.142 24 C -0.037 4.037 25 Cl -0.035 7.035 26 C -0.142 4.142 27 C -0.069 4.069 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.422 -4.038 28.765 29.980 hybrid contribution -0.547 0.339 -0.103 0.652 sum 6.875 -3.699 28.662 29.706 Atomic orbital electron populations 1.22453 0.99207 1.00980 0.99242 1.19281 0.89900 0.95267 0.82989 0.91997 1.21160 1.32616 1.14166 0.88505 0.90414 1.24879 0.95715 0.96588 0.95656 1.69877 1.45265 1.40218 0.97952 0.86909 0.80360 0.83883 0.77504 1.20438 1.18807 1.22131 1.47892 1.49455 1.11816 1.22971 1.21586 1.01802 0.82834 0.99413 1.20458 0.78902 0.87143 0.84488 1.90663 1.58067 1.17310 1.77027 1.21678 1.00744 0.99745 0.95634 1.21148 1.00599 0.97754 0.93873 1.22095 1.00635 0.99661 0.97953 1.22514 0.78094 0.88467 0.84044 1.90584 1.51705 1.20296 1.68578 1.20781 1.02032 0.95291 0.98176 1.21481 0.96762 0.94752 0.94878 1.21074 0.97951 1.00178 0.95028 1.21297 0.98069 0.94865 0.89433 1.98397 1.82159 1.90105 1.32880 1.21080 1.01405 0.94389 0.97305 1.21453 0.92947 1.00220 0.92317 0.93191 0.92568 0.94844 0.92464 0.92863 0.92671 0.90930 0.89414 0.89187 0.90420 0.90617 0.88147 0.88023 0.83732 0.84157 0.84262 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.65 37.16 0.32 -3.14 16 2 C 0.23 5.52 2.23 -69.08 -0.15 5.36 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.60 8.95 -34.44 -0.31 -14.91 16 5 H 0.08 2.31 7.89 -52.49 -0.41 1.90 16 6 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 8 Si 0.88 22.05 24.37 -169.99 -4.14 17.91 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 10 H -0.26 -6.53 6.53 56.52 0.37 -6.17 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 N -0.59 -11.90 2.75 -175.25 -0.48 -12.38 16 13 C 0.09 1.35 9.48 59.85 0.57 1.92 16 14 C 0.50 9.76 7.67 -10.99 -0.08 9.67 16 15 O -0.55 -13.15 15.31 5.55 0.09 -13.06 16 16 C -0.14 -1.75 4.25 -27.89 -0.12 -1.87 16 17 C -0.10 -1.21 3.79 -26.73 -0.10 -1.31 16 18 C -0.17 -1.34 4.31 -27.88 -0.12 -1.46 16 19 C 0.39 3.93 7.11 -30.72 -0.22 3.72 16 20 O -0.44 -6.13 15.97 5.57 0.09 -6.04 16 21 C -0.16 -1.30 5.87 -105.07 -0.62 -1.92 16 22 C -0.06 -0.35 9.47 -39.11 -0.37 -0.72 16 23 C -0.12 -0.71 9.81 -39.61 -0.39 -1.10 16 24 C -0.01 -0.07 6.33 -39.34 -0.25 -0.31 16 25 Cl -0.06 -0.41 28.95 -51.86 -1.50 -1.92 16 26 C -0.12 -0.83 9.81 -39.61 -0.39 -1.22 16 27 C -0.05 -0.40 9.60 -39.12 -0.38 -0.78 16 28 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 29 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 34 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 35 H 0.09 0.86 7.40 -51.93 -0.38 0.48 16 36 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 38 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 39 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 40 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.14 0.46 7.05 -52.49 -0.37 0.09 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.14 1.13 7.65 -52.49 -0.40 0.73 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -35.30 374.45 -8.27 -43.57 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.03 Total: -1.40 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.70 Total: -6.05 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.29 Total: -38.65 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.30 -8.27 -43.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096408435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.354 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds