Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00454 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00298 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.46823 * 269.97589 * 6 5 4 8 8 C 1.46501 * 120.00054 * 84.99938 * 7 6 5 9 9 C 1.53006 * 117.49650 * 8.61886 * 8 7 6 10 10 C 1.52998 * 59.99885 * 252.51233 * 9 8 7 11 11 S 1.65593 * 119.99865 * 264.99388 * 7 6 5 12 12 O 1.42102 * 104.27892 * 206.07127 * 11 7 6 13 13 O 1.42096 * 104.28151 * 333.93625 * 11 7 6 14 14 C 1.81402 * 104.44703 * 90.00373 * 11 7 6 15 15 C 1.53004 * 109.47127 * 179.97438 * 14 11 7 16 16 C 1.50702 * 109.46871 * 179.97438 * 15 14 11 17 17 H 1.07992 * 120.00518 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99491 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99520 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00267 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47073 * 89.99926 * 20 18 16 22 22 H 1.48493 * 109.47082 * 209.99672 * 20 18 16 23 23 H 1.48496 * 109.46996 * 330.00120 * 20 18 16 24 24 C 1.38220 * 120.00047 * 359.97438 * 5 4 3 25 25 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 26 26 C 1.50701 * 119.99804 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 28 28 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 29 29 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 30 30 H 1.08000 * 119.99741 * 359.97342 * 3 2 1 31 31 H 1.08005 * 120.00167 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47118 * 29.97250 * 6 5 4 33 33 H 1.08996 * 109.47165 * 149.97678 * 6 5 4 34 34 H 1.08999 * 115.54991 * 154.32667 * 8 7 6 35 35 H 1.08999 * 117.49831 * 0.02562 * 9 8 7 36 36 H 1.09003 * 117.49481 * 145.02655 * 9 8 7 37 37 H 1.08997 * 117.50325 * 252.51091 * 10 9 8 38 38 H 1.09003 * 117.52234 * 107.48237 * 10 9 8 39 39 H 1.09006 * 109.47423 * 299.99621 * 14 11 7 40 40 H 1.08997 * 109.47179 * 59.99843 * 14 11 7 41 41 H 1.08997 * 109.47353 * 299.99922 * 15 14 11 42 42 H 1.08997 * 109.47083 * 59.99951 * 15 14 11 43 43 H 0.97005 * 119.99780 * 180.02562 * 19 18 16 44 44 H 1.08000 * 119.99660 * 180.29800 * 24 5 4 45 45 H 1.08999 * 109.46988 * 270.01842 * 26 25 2 46 46 H 1.08990 * 109.47415 * 30.02092 * 26 25 2 47 47 H 1.09006 * 109.46768 * 150.01991 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0005 7 7 6.2670 -0.0004 -1.3818 8 6 6.4069 1.2632 -2.1099 9 6 6.2229 2.5592 -1.3175 10 6 5.1466 2.1081 -2.3070 11 16 6.6609 -1.4293 -2.1201 12 8 7.6189 -1.0631 -3.1037 13 8 7.0064 -2.2946 -1.0472 14 6 5.1187 -1.9733 -2.9052 15 6 5.3556 -3.2999 -3.6297 16 6 4.0742 -3.7521 -4.2813 17 1 3.1804 -3.1532 -4.1884 18 6 4.0433 -4.9302 -4.9971 19 7 2.9252 -5.3246 -5.5662 20 14 5.5894 -5.9660 -5.1585 21 1 5.6531 -6.9383 -4.0378 22 1 5.5612 -6.6997 -6.4492 23 1 6.7829 -5.0835 -5.1166 24 6 3.5806 -1.1969 0.0005 25 6 2.1981 -1.1969 0.0005 26 6 1.4446 -2.5020 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1329 -0.0010 32 1 6.1420 0.8904 0.5129 33 1 6.1421 -0.8895 0.5136 34 1 7.1441 1.2641 -2.9127 35 1 5.9982 2.4715 -0.2545 36 1 6.8393 3.4129 -1.5990 37 1 5.0549 2.6651 -3.2394 38 1 4.2134 1.7236 -1.8955 39 1 4.3507 -2.1072 -2.1433 40 1 4.7914 -1.2211 -3.6229 41 1 6.1234 -3.1658 -4.3916 42 1 5.6832 -4.0523 -2.9123 43 1 2.9033 -6.1536 -6.0694 44 1 4.1207 -2.1321 0.0054 45 1 1.2623 -2.8162 1.0282 46 1 0.4927 -2.3720 -0.5140 47 1 2.0342 -3.2618 -0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096419795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = -23.190208 kcal Electronic energy + Delta-G solvation = -28476.074429 eV Core-core repulsion = 24751.763734 eV Total energy + Delta-G solvation = -3724.310696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05852 -38.11622 -36.82172 -35.60007 -34.31813 -33.93919 -32.83377 -31.89697 -31.42903 -28.29731 -27.11591 -25.94859 -24.67258 -22.46384 -22.20768 -21.79743 -21.06657 -20.10161 -18.56557 -17.87515 -16.99402 -16.66013 -15.95395 -15.63720 -15.55864 -14.98596 -14.82169 -14.66530 -14.32044 -14.25305 -13.69972 -13.33792 -13.19056 -12.94778 -12.84541 -12.76441 -12.66269 -12.21238 -12.00697 -11.89104 -11.88194 -11.76771 -11.66628 -11.57829 -11.44018 -11.21849 -11.17208 -11.11888 -10.84120 -10.72832 -10.48073 -10.40960 -10.13465 -9.68810 -9.38637 -8.72929 -8.68868 -8.65118 -8.39938 -6.15525 -4.16139 0.59945 1.27889 1.39572 2.83378 3.26337 3.33909 3.38478 3.69957 3.74576 4.16460 4.36506 4.39480 4.64011 4.69968 4.74942 4.85822 4.89469 4.91364 4.95124 4.98831 5.16383 5.17548 5.32336 5.41034 5.49008 5.51180 5.57067 5.59070 5.62281 5.67762 5.71926 5.76780 5.86557 5.87583 5.96505 6.03144 6.13586 6.21567 6.31172 6.32765 6.42758 6.52761 6.64230 6.70123 6.83904 6.95269 7.03089 7.55906 8.38611 8.86556 9.44461 10.96834 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.005203 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.758662 B = 5380.092421 C = 7289.324681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.114 4.114 6 C 0.150 3.850 7 N -0.970 5.970 8 C 0.082 3.918 9 C -0.184 4.184 10 C -0.208 4.208 11 S 2.587 3.413 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.581 4.581 15 C -0.006 4.006 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.866 3.134 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.109 4.109 25 C -0.075 4.075 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.031 0.969 42 H 0.026 0.974 43 H 0.266 0.734 44 H 0.127 0.873 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 15.781 13.334 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.116 4.116 6 C 0.025 3.975 7 N -0.801 5.801 8 C -0.025 4.025 9 C -0.223 4.223 10 C -0.247 4.247 11 S 2.686 3.314 12 O -0.953 6.953 13 O -0.953 6.953 14 C -0.715 4.715 15 C -0.045 4.045 16 C -0.554 4.554 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.693 3.307 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.127 4.127 25 C -0.075 4.075 26 C -0.180 4.180 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.145 0.855 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.136 15.231 13.266 20.199 hybrid contribution -0.059 -0.396 -0.346 0.529 sum 0.078 14.835 12.920 19.673 Atomic orbital electron populations 1.20867 0.91422 1.03072 1.02104 1.19789 0.95977 0.92678 0.99949 1.20956 0.94057 0.97313 1.01546 1.21033 0.94149 0.97502 1.00275 1.20251 0.96017 0.93513 1.01801 1.20330 0.89313 1.05203 0.82676 1.57292 1.81064 1.20523 1.21250 1.21535 1.00696 0.81446 0.98829 1.23295 1.03316 0.97376 0.98292 1.23850 0.95479 1.04030 1.01305 1.05798 0.78234 0.72798 0.74547 1.93526 1.58319 1.81751 1.61747 1.93527 1.83034 1.64937 1.53849 1.30399 1.18799 1.09884 1.12379 1.19408 1.00265 0.89130 0.95693 1.20824 0.94913 1.07291 1.32361 0.90381 1.24963 0.96024 0.97244 0.94750 1.69880 1.26127 1.23079 1.34272 0.86969 0.84424 0.81155 0.78192 1.19674 1.20749 1.18654 1.21108 0.93922 0.97860 0.99837 1.19783 0.93507 0.95138 0.99057 1.20933 1.00630 0.94315 1.02163 0.91341 0.91755 0.90842 0.86251 0.85685 0.89097 0.87670 0.84021 0.88153 0.88091 0.88278 0.86800 0.85550 0.85568 0.95072 0.95553 0.92437 0.85503 0.91266 0.90985 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.60 36.00 0.35 -0.77 16 2 C -0.08 -0.98 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 4 C -0.11 -1.18 6.55 -39.59 -0.26 -1.44 16 5 C -0.11 -1.39 5.09 -104.62 -0.53 -1.92 16 6 C 0.15 1.79 5.32 -5.19 -0.03 1.77 16 7 N -0.97 -13.43 3.05 -108.56 -0.33 -13.76 16 8 C 0.08 0.99 6.36 -67.93 -0.43 0.56 16 9 C -0.18 -1.64 9.19 -26.73 -0.25 -1.89 16 10 C -0.21 -2.14 9.50 -26.73 -0.25 -2.40 16 11 S 2.59 46.55 5.43 -107.50 -0.58 45.97 16 12 O -0.96 -19.56 16.75 -57.54 -0.96 -20.52 16 13 O -0.96 -18.99 16.53 -57.54 -0.95 -19.94 16 14 C -0.58 -11.26 6.12 37.16 0.23 -11.04 16 15 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 16 C -0.51 -14.36 9.66 -34.44 -0.33 -14.70 16 17 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 20 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C -0.11 -1.48 7.65 -39.58 -0.30 -1.78 16 25 C -0.07 -0.98 5.88 -104.63 -0.62 -1.60 16 26 C -0.12 -1.53 9.60 36.01 0.35 -1.19 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.10 5.35 -52.48 -0.28 0.82 16 32 H 0.09 0.86 6.01 -51.93 -0.31 0.55 16 33 H 0.11 1.32 6.76 -51.93 -0.35 0.97 16 34 H 0.14 1.77 7.28 -51.93 -0.38 1.39 16 35 H 0.10 0.81 4.80 -51.93 -0.25 0.56 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.26 4.51 -51.93 -0.23 1.02 16 39 H 0.13 2.31 5.89 -51.92 -0.31 2.00 16 40 H 0.13 2.31 8.14 -51.93 -0.42 1.88 16 41 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 42 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.13 1.78 7.70 -52.49 -0.40 1.37 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 47 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -33.45 375.79 -11.22 -44.67 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.86 Total: 5.15 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -3.29 Total: -37.92 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.44 Total: -39.92 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.92 Total: -40.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -0.58 Total: 45.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.45 -11.22 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096419795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.481 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds