Wall clock time and date at job start Tue Mar 31 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.99824 * 2 1 4 4 C 1.54333 * 109.88145 * 121.09124 * 2 1 3 5 5 C 1.55158 * 102.93963 * 97.22289 * 4 2 1 6 6 H 1.08997 * 111.00736 * 277.39005 * 5 4 2 7 7 C 1.50705 * 111.00183 * 153.57514 * 5 4 2 8 8 C 1.38238 * 119.99687 * 142.10811 * 7 5 4 9 9 C 1.38236 * 119.99620 * 179.78696 * 8 7 5 10 10 C 1.38240 * 119.99961 * 0.44945 * 9 8 7 11 11 C 1.38230 * 120.00038 * 359.80950 * 10 9 8 12 12 C 1.38231 * 120.00179 * 322.38947 * 7 5 4 13 13 C 1.54902 * 101.58213 * 35.50498 * 5 4 2 14 14 H 1.08997 * 110.37115 * 204.15049 * 13 5 4 15 15 C 1.53001 * 110.37214 * 81.82539 * 13 5 4 16 16 N 1.47018 * 109.88328 * 238.89874 * 2 1 3 17 17 S 1.65600 * 125.64794 * 59.54736 * 16 2 1 18 18 O 1.42096 * 104.27557 * 206.04458 * 17 16 2 19 19 O 1.42101 * 104.27638 * 333.90600 * 17 16 2 20 20 C 1.81406 * 104.44834 * 89.97287 * 17 16 2 21 21 C 1.53003 * 109.46740 * 179.97438 * 20 17 16 22 22 C 1.50701 * 109.46639 * 179.97438 * 21 20 17 23 23 H 1.07997 * 120.00392 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99892 * 179.97438 * 22 21 20 25 25 N 1.31522 * 119.99954 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00233 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46652 * 60.00480 * 26 24 22 28 28 H 1.48495 * 109.47004 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46944 * 300.00495 * 26 24 22 30 30 H 1.08999 * 109.47004 * 300.36260 * 1 2 3 31 31 H 1.08996 * 109.46715 * 60.36269 * 1 2 3 32 32 H 1.08999 * 109.47050 * 180.36162 * 1 2 3 33 33 H 1.09004 * 110.71938 * 338.86545 * 4 2 1 34 34 H 1.08995 * 110.87050 * 215.65754 * 4 2 1 35 35 H 1.08001 * 120.00005 * 359.97438 * 8 7 5 36 36 H 1.08000 * 119.99778 * 180.27437 * 9 8 7 37 37 H 1.08001 * 119.99679 * 179.82911 * 10 9 8 38 38 H 1.07999 * 119.99740 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.00067 * 359.97438 * 12 7 5 40 40 H 1.08998 * 109.46708 * 64.89778 * 15 13 5 41 41 H 1.08993 * 109.47457 * 184.90435 * 15 13 5 42 42 H 1.09007 * 109.46882 * 304.90593 * 15 13 5 43 43 H 1.08997 * 109.47147 * 299.99955 * 20 17 16 44 44 H 1.09002 * 109.46666 * 60.00270 * 20 17 16 45 45 H 1.08997 * 109.47442 * 299.99993 * 21 20 17 46 46 H 1.09004 * 109.46880 * 60.00316 * 21 20 17 47 47 H 0.96994 * 119.99968 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 2.3518 -2.1695 0.6926 6 1 1.4453 -2.7738 0.6612 7 6 3.4235 -2.8502 1.5045 8 6 3.3363 -4.2046 1.7671 9 6 4.3216 -4.8298 2.5081 10 6 5.3894 -4.0988 2.9944 11 6 5.4738 -2.7434 2.7364 12 6 4.4908 -2.1191 1.9916 13 6 2.8568 -1.8499 -0.7365 14 1 2.7088 -2.7081 -1.3920 15 6 4.3339 -1.4525 -0.7030 16 7 2.0300 -0.7142 -1.1838 17 16 1.7169 -0.3095 -2.7588 18 8 1.8461 -1.5343 -3.4676 19 8 0.4742 0.3776 -2.7036 20 6 3.0549 0.8302 -3.2079 21 6 2.8756 1.2805 -4.6591 22 6 3.9868 2.2277 -5.0320 23 1 4.7452 2.4827 -4.3067 24 6 4.0357 2.7681 -6.2995 25 7 3.1123 2.4573 -7.1830 26 14 5.4134 3.9417 -6.7620 27 1 6.7207 3.2527 -6.6151 28 1 5.2393 4.3789 -8.1705 29 1 5.3752 5.1268 -5.8680 30 1 -0.3633 0.5195 0.8867 31 1 -0.3632 0.5082 -0.8932 32 1 -0.3633 -1.0276 0.0065 33 1 1.2917 -0.7890 2.0202 34 1 2.9651 -0.2843 1.6211 35 1 2.4998 -4.7748 1.3907 36 1 4.2557 -5.8888 2.7095 37 1 6.1577 -4.5868 3.5757 38 1 6.3083 -2.1725 3.1160 39 1 4.5568 -1.0601 1.7900 40 1 4.9317 -2.3034 -0.3761 41 1 4.6509 -1.1475 -1.7002 42 1 4.4715 -0.6237 -0.0085 43 1 3.0274 1.6996 -2.5512 44 1 4.0144 0.3241 -3.1008 45 1 2.9034 0.4108 -5.3155 46 1 1.9160 1.7864 -4.7666 47 1 3.1465 2.8378 -8.0746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:49 Heat of formation + Delta-G solvation = -53.432315 kcal Electronic energy + Delta-G solvation = -27898.468442 eV Core-core repulsion = 24172.846350 eV Total energy + Delta-G solvation = -3725.622092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.47608 -38.37316 -36.65495 -35.42904 -33.89687 -33.27425 -31.94552 -31.20194 -31.14240 -29.10948 -27.90854 -25.65950 -25.21494 -22.81439 -22.48050 -21.75925 -20.94616 -20.01148 -18.36802 -17.46057 -17.08250 -16.49848 -16.00886 -15.68436 -15.31503 -15.15853 -14.75005 -14.56427 -14.32187 -13.96282 -13.68674 -13.52486 -13.37122 -13.11586 -12.83703 -12.69255 -12.49992 -12.40304 -12.32930 -11.84534 -11.74485 -11.56790 -11.56053 -11.41402 -11.26106 -11.13395 -11.06117 -10.95971 -10.73763 -10.59783 -10.53198 -10.35753 -10.35460 -9.74946 -9.33247 -9.10011 -8.93056 -8.68747 -8.50081 -6.12334 -4.18024 0.74418 1.13655 1.19717 3.03255 3.26989 3.31754 3.33599 3.53773 4.24622 4.28675 4.35758 4.42169 4.50842 4.70066 4.78312 4.81906 4.89631 4.95825 5.07273 5.14818 5.22565 5.24859 5.32903 5.35881 5.39794 5.48492 5.52075 5.59538 5.69568 5.73929 5.78607 5.81369 5.83425 5.90371 5.95136 6.12652 6.20254 6.26719 6.31189 6.35575 6.44871 6.51330 6.58373 6.61978 6.78962 7.29719 7.36004 7.80414 8.17658 8.85091 9.46610 10.98716 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.003113 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.069277 B = 8992.676154 C = 9973.792283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.151 3.849 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.055 4.055 6 H 0.093 0.907 7 C -0.066 4.066 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.112 4.112 13 C 0.154 3.846 14 H 0.093 0.907 15 C -0.173 4.173 16 N -1.009 6.009 17 S 2.603 3.397 18 O -0.963 6.963 19 O -0.959 6.959 20 C -0.590 4.590 21 C 0.029 3.971 22 C -0.520 4.520 23 H 0.061 0.939 24 C 0.058 3.942 25 N -0.891 5.891 26 Si 0.900 3.100 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -11.029 22.771 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.045 3.955 3 H 0.092 0.908 4 C -0.158 4.158 5 C -0.075 4.075 6 H 0.111 0.889 7 C -0.067 4.067 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.139 4.139 12 C -0.129 4.129 13 C 0.048 3.952 14 H 0.111 0.889 15 C -0.232 4.232 16 N -0.845 5.845 17 S 2.704 3.296 18 O -0.953 6.953 19 O -0.949 6.949 20 C -0.723 4.723 21 C -0.010 4.010 22 C -0.560 4.560 23 H 0.079 0.921 24 C -0.145 4.145 25 N -0.529 5.529 26 Si 0.727 3.273 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.508 -11.313 21.983 24.728 hybrid contribution 1.398 0.954 -0.142 1.698 sum 1.906 -10.359 21.841 24.248 Atomic orbital electron populations 1.22582 0.94622 1.02816 1.04381 1.21228 0.94494 0.95481 0.84347 0.90808 1.22882 1.01838 0.94166 0.96868 1.21326 0.96686 0.96176 0.93300 0.88913 1.19613 0.95693 0.93706 0.97655 1.21076 0.99247 0.94126 0.98843 1.21120 0.94603 0.99782 0.98331 1.21141 0.98331 0.94447 1.00419 1.21149 0.98953 0.94932 0.98902 1.21225 0.93963 1.00335 0.97420 1.21439 0.90216 0.88918 0.94605 0.88886 1.22476 0.95599 1.02345 1.02745 1.59032 1.64055 1.39280 1.22099 1.05339 0.77084 0.75875 0.71334 1.93528 1.87778 1.43226 1.70812 1.93483 1.40215 1.76511 1.84704 1.30543 1.16588 1.14461 1.10735 1.18952 0.99400 0.97906 0.84738 1.20962 1.10251 1.27085 0.97689 0.92112 1.25070 0.96311 0.96710 0.96369 1.69946 1.33790 1.43848 1.05294 0.86529 0.82095 0.81063 0.77587 1.20063 1.21053 1.20071 0.92031 0.88564 0.92547 0.90013 0.90236 0.86050 0.86239 0.86382 0.86179 0.85455 0.90976 0.92021 0.91649 0.86307 0.86321 0.94947 0.94893 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 8.95 37.16 0.33 -1.90 16 2 C 0.15 1.73 3.70 -66.95 -0.25 1.48 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.05 5.44 -24.89 -0.14 -1.18 16 5 C -0.05 -0.53 3.18 -89.62 -0.28 -0.81 16 6 H 0.09 0.86 8.06 -51.93 -0.42 0.45 16 7 C -0.07 -0.60 4.29 -104.62 -0.45 -1.05 16 8 C -0.11 -0.99 9.69 -39.58 -0.38 -1.37 16 9 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 10 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 11 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 12 C -0.11 -0.95 6.84 -39.59 -0.27 -1.22 16 13 C 0.15 1.86 3.33 -66.42 -0.22 1.64 16 14 H 0.09 1.22 7.67 -51.93 -0.40 0.82 16 15 C -0.17 -1.91 8.02 37.16 0.30 -1.62 16 16 N -1.01 -14.00 2.99 -97.51 -0.29 -14.29 16 17 S 2.60 48.06 5.64 -107.50 -0.61 47.45 16 18 O -0.96 -20.48 17.28 -57.54 -0.99 -21.47 16 19 O -0.96 -19.61 14.86 -57.54 -0.86 -20.46 16 20 C -0.59 -11.54 6.12 37.16 0.23 -11.31 16 21 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 22 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 23 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 24 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 25 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 26 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.45 5.51 -51.93 -0.29 1.16 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.62 7.83 -51.93 -0.41 0.21 16 34 H 0.08 0.61 5.54 -51.93 -0.29 0.33 16 35 H 0.12 0.90 8.05 -52.49 -0.42 0.48 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.97 4.82 -52.49 -0.25 0.72 16 40 H 0.07 0.74 6.61 -51.93 -0.34 0.40 16 41 H 0.06 0.75 7.12 -51.93 -0.37 0.38 16 42 H 0.06 0.63 5.81 -51.93 -0.30 0.33 16 43 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 44 H 0.12 2.12 7.12 -51.92 -0.37 1.75 16 45 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -33.92 377.37 -11.43 -45.35 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.20 Total: 1.45 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -2.88 Total: -34.06 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.44 Total: -40.20 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.85 Total: -41.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.61 Total: 47.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.92 -11.43 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.083 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds