Wall clock time and date at job start Tue Mar 31 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41663 * 2 1 4 4 C 1.55131 * 110.49452 * 237.64341 * 2 1 3 5 5 C 1.55157 * 101.48837 * 278.45090 * 4 2 1 6 6 H 1.09009 * 110.86591 * 82.76755 * 5 4 2 7 7 C 1.50692 * 110.72596 * 205.96961 * 5 4 2 8 8 C 1.38241 * 119.99777 * 53.25177 * 7 5 4 9 9 C 1.38232 * 120.00227 * 179.81372 * 8 7 5 10 10 C 1.38235 * 119.99601 * 0.39433 * 9 8 7 11 11 C 1.38236 * 120.00444 * 359.86059 * 10 9 8 12 12 C 1.38233 * 120.00606 * 233.52915 * 7 5 4 13 13 C 1.54320 * 102.94337 * 324.33877 * 5 4 2 14 14 H 1.09001 * 109.88306 * 262.76950 * 13 5 4 15 15 C 1.52999 * 109.88152 * 141.60490 * 13 5 4 16 16 N 1.47021 * 107.27318 * 22.18902 * 13 5 4 17 17 S 1.65600 * 125.64883 * 181.02456 * 16 13 5 18 18 O 1.42099 * 104.27906 * 333.92573 * 17 16 13 19 19 O 1.42101 * 104.27759 * 206.06809 * 17 16 13 20 20 C 1.81396 * 104.45054 * 89.99794 * 17 16 13 21 21 C 1.52996 * 109.47320 * 179.97438 * 20 17 16 22 22 C 1.50702 * 109.47159 * 179.97438 * 21 20 17 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72211 * 22 21 20 25 25 N 1.31514 * 119.99698 * 0.28408 * 24 22 21 26 26 Si 1.86794 * 119.99837 * 180.27476 * 24 22 21 27 27 H 1.48496 * 109.47341 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46983 * 120.00379 * 26 24 22 29 29 H 1.48503 * 109.47491 * 240.00192 * 26 24 22 30 30 H 1.08995 * 109.47288 * 297.70532 * 1 2 3 31 31 H 1.09004 * 109.47088 * 57.70798 * 1 2 3 32 32 H 1.08999 * 109.46980 * 177.70489 * 1 2 3 33 33 H 1.09006 * 111.18741 * 160.35215 * 4 2 1 34 34 H 1.09001 * 110.93931 * 36.45181 * 4 2 1 35 35 H 1.08005 * 119.99990 * 359.97438 * 8 7 5 36 36 H 1.07994 * 120.00474 * 180.22782 * 9 8 7 37 37 H 1.08006 * 119.99916 * 179.83401 * 10 9 8 38 38 H 1.08005 * 120.00220 * 179.97438 * 11 10 9 39 39 H 1.08003 * 119.99603 * 359.97438 * 12 7 5 40 40 H 1.08999 * 109.47498 * 300.73012 * 15 13 5 41 41 H 1.09003 * 109.47371 * 60.73853 * 15 13 5 42 42 H 1.09010 * 109.47137 * 180.73585 * 15 13 5 43 43 H 1.09004 * 109.46947 * 59.99849 * 20 17 16 44 44 H 1.09000 * 109.47486 * 300.00277 * 20 17 16 45 45 H 1.09004 * 109.47066 * 60.00127 * 21 20 17 46 46 H 1.08994 * 109.47405 * 299.99958 * 21 20 17 47 47 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0732 -0.7777 -1.2275 5 6 1.9721 -2.2449 -0.7332 6 1 0.9630 -2.6330 -0.8728 7 6 2.9786 -3.1161 -1.4394 8 6 4.3147 -2.7613 -1.4477 9 6 5.2386 -3.5624 -2.0922 10 6 4.8254 -4.7141 -2.7352 11 6 3.4887 -5.0663 -2.7314 12 6 2.5653 -4.2672 -2.0837 13 6 2.3092 -2.1279 0.7682 14 1 3.3602 -2.3660 0.9318 15 6 1.4251 -3.0803 1.5757 16 7 2.0431 -0.7384 1.1683 17 16 2.2745 -0.1089 2.6824 18 8 2.1565 -1.2286 3.5493 19 8 1.3575 0.9742 2.7556 20 6 3.9820 0.5031 2.6620 21 6 4.3202 1.1166 4.0221 22 6 5.7390 1.6245 4.0053 23 1 6.3393 1.5205 3.1136 24 6 6.2687 2.2275 5.1265 25 7 5.5376 2.3545 6.2122 26 14 8.0247 2.8639 5.1031 27 1 8.6287 2.6014 3.7721 28 1 8.0252 4.3254 5.3668 29 1 8.8163 2.1715 6.1516 30 1 -0.3633 0.4778 0.9098 31 1 -0.3633 0.5490 -0.8688 32 1 -0.3633 -1.0268 -0.0412 33 1 3.1077 -0.5072 -1.4390 34 1 1.4425 -0.6155 -2.1016 35 1 4.6370 -1.8594 -0.9485 36 1 6.2829 -3.2871 -2.0956 37 1 5.5469 -5.3387 -3.2411 38 1 3.1658 -5.9660 -3.2342 39 1 1.5209 -4.5423 -2.0806 40 1 0.3769 -2.8307 1.4111 41 1 1.6090 -4.1060 1.2559 42 1 1.6595 -2.9828 2.6358 43 1 4.0871 1.2610 1.8857 44 1 4.6620 -0.3237 2.4567 45 1 4.2151 0.3589 4.7987 46 1 3.6404 1.9435 4.2269 47 1 5.9103 2.7785 7.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:52 Heat of formation + Delta-G solvation = -60.175843 kcal Electronic energy + Delta-G solvation = -27898.510571 eV Core-core repulsion = 24172.596058 eV Total energy + Delta-G solvation = -3725.914513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27863 -38.40562 -36.63675 -35.41345 -33.89126 -33.04592 -32.07405 -31.16164 -31.09371 -29.31071 -28.10555 -25.57638 -24.59341 -22.99030 -22.35872 -21.73081 -21.05287 -20.20144 -18.40071 -17.73038 -16.91646 -16.47887 -15.94236 -15.42111 -15.35263 -15.06467 -14.63392 -14.53733 -13.97514 -13.82975 -13.76574 -13.58233 -13.36663 -13.31743 -12.98380 -12.70535 -12.52652 -12.46654 -12.06862 -11.75369 -11.71275 -11.60675 -11.52910 -11.43513 -11.30808 -11.12864 -11.09694 -10.97053 -10.79996 -10.68545 -10.49349 -10.38501 -10.36865 -9.77142 -9.33384 -9.09785 -8.84640 -8.72556 -8.51154 -6.12972 -4.18419 0.74670 1.15797 1.22114 3.04994 3.24789 3.32031 3.35438 3.56254 4.24445 4.30670 4.38175 4.39418 4.50406 4.74009 4.80935 4.82425 4.95051 5.03303 5.08374 5.15385 5.22258 5.26627 5.31692 5.40702 5.43885 5.46058 5.52115 5.64987 5.68898 5.74025 5.75982 5.81644 5.86242 5.93447 5.94397 6.13997 6.26161 6.30753 6.34501 6.37620 6.45671 6.49406 6.57035 6.61258 6.81997 7.29515 7.35574 7.80230 8.17219 8.85119 9.46329 10.98117 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.003511 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.461526 B = 7972.022269 C = 9425.212203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.085 0.915 4 C -0.119 4.119 5 C -0.055 4.055 6 H 0.093 0.907 7 C -0.069 4.069 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.160 3.840 14 H 0.076 0.924 15 C -0.183 4.183 16 N -1.011 6.011 17 S 2.603 3.397 18 O -0.959 6.959 19 O -0.961 6.961 20 C -0.590 4.590 21 C 0.028 3.972 22 C -0.519 4.519 23 H 0.062 0.938 24 C 0.057 3.943 25 N -0.890 5.890 26 Si 0.900 3.100 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -12.427 -20.144 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.074 4.074 6 H 0.111 0.889 7 C -0.070 4.070 8 C -0.132 4.132 9 C -0.135 4.135 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.054 3.946 14 H 0.094 0.906 15 C -0.241 4.241 16 N -0.846 5.846 17 S 2.703 3.297 18 O -0.949 6.949 19 O -0.951 6.951 20 C -0.724 4.724 21 C -0.011 4.011 22 C -0.558 4.558 23 H 0.080 0.920 24 C -0.145 4.145 25 N -0.528 5.528 26 Si 0.727 3.273 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.443 -12.319 -19.181 23.980 hybrid contribution 1.601 0.408 -0.285 1.676 sum -5.842 -11.911 -19.465 23.556 Atomic orbital electron populations 1.22224 0.95041 1.02213 1.02997 1.21506 0.94211 0.95685 0.84287 0.89678 1.23012 1.02286 0.93217 0.97219 1.21305 0.98103 0.94694 0.93325 0.88899 1.19707 0.94057 0.95330 0.97867 1.21112 0.92673 1.00031 0.99355 1.21174 0.99635 0.94965 0.97683 1.21151 0.95995 0.97249 0.99989 1.21119 0.93408 0.99608 0.99711 1.21046 0.99603 0.94569 0.98104 1.21293 0.99347 0.81080 0.92847 0.90643 1.22546 0.99733 0.98435 1.03430 1.59073 1.80078 1.18027 1.27428 1.05367 0.78605 0.74102 0.71611 1.93491 1.87072 1.51105 1.63273 1.93533 1.60822 1.56019 1.84754 1.30502 1.20369 1.11134 1.10364 1.18960 0.99245 0.96405 0.86465 1.21037 0.96799 1.39033 0.98974 0.92020 1.25075 0.98260 0.95780 0.95408 1.69968 1.36658 1.43321 1.02883 0.86418 0.84103 0.78636 0.78159 1.19645 1.20780 1.20769 0.91093 0.91780 0.92361 0.90108 0.89940 0.85687 0.86023 0.86320 0.86256 0.86147 0.92450 0.92040 0.88732 0.86377 0.86374 0.94889 0.94915 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.52 37.16 0.35 -1.45 16 2 C 0.15 1.70 3.33 -66.29 -0.22 1.48 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.12 -1.06 5.95 -24.46 -0.15 -1.20 16 5 C -0.05 -0.51 2.31 -89.94 -0.21 -0.72 16 6 H 0.09 0.79 7.21 -51.92 -0.37 0.41 16 7 C -0.07 -0.65 4.92 -104.63 -0.51 -1.17 16 8 C -0.11 -1.11 8.16 -39.58 -0.32 -1.44 16 9 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 10 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 12 C -0.12 -0.99 9.68 -39.59 -0.38 -1.37 16 13 C 0.16 1.94 3.17 -66.96 -0.21 1.73 16 14 H 0.08 0.92 7.13 -51.93 -0.37 0.55 16 15 C -0.18 -2.30 8.99 37.16 0.33 -1.96 16 16 N -1.01 -13.93 2.97 -97.39 -0.29 -14.22 16 17 S 2.60 47.65 5.64 -107.50 -0.61 47.04 16 18 O -0.96 -19.68 15.00 -57.54 -0.86 -20.55 16 19 O -0.96 -19.97 16.98 -57.54 -0.98 -20.95 16 20 C -0.59 -11.50 6.11 37.16 0.23 -11.27 16 21 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 22 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 23 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 25 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 26 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.07 0.94 7.51 -51.93 -0.39 0.55 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 7.37 -51.93 -0.38 0.20 16 33 H 0.08 0.70 6.74 -51.93 -0.35 0.35 16 34 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.13 1.19 7.27 -52.48 -0.38 0.80 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.12 0.84 7.98 -52.48 -0.42 0.42 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.46 5.65 -51.92 -0.29 1.16 16 43 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 44 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -33.87 386.86 -11.60 -45.47 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.57 Total: 1.28 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: -2.84 Total: -34.28 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.45 Total: -40.05 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.84 Total: -41.50 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.65 SS G_CDS: -0.61 Total: 47.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.87 -11.60 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.710 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds