Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.32950 * 2 1 4 4 C 1.54909 * 110.37089 * 122.35590 * 2 1 3 5 5 C 1.55153 * 101.58461 * 155.84553 * 4 2 1 6 6 H 1.09001 * 110.72122 * 82.86572 * 5 4 2 7 7 C 1.50702 * 110.87150 * 206.06387 * 5 4 2 8 8 C 1.38241 * 119.99827 * 53.34593 * 7 5 4 9 9 C 1.38239 * 119.99695 * 179.81145 * 8 7 5 10 10 C 1.38230 * 119.99810 * 0.40705 * 9 8 7 11 11 C 1.38236 * 120.00566 * 359.81831 * 10 9 8 12 12 C 1.38231 * 120.00168 * 233.60392 * 7 5 4 13 13 C 1.54326 * 102.94415 * 324.50024 * 5 4 2 14 14 H 1.08999 * 110.01211 * 262.70650 * 13 5 4 15 15 C 1.52990 * 109.88294 * 141.60943 * 13 5 4 16 16 N 1.47019 * 107.26755 * 22.19265 * 13 5 4 17 17 S 1.65608 * 125.64796 * 181.04313 * 16 13 5 18 18 O 1.42105 * 104.27704 * 19.04239 * 17 16 13 19 19 O 1.42094 * 104.28044 * 146.90300 * 17 16 13 20 20 C 1.81403 * 104.44368 * 262.97438 * 17 16 13 21 21 C 1.53005 * 109.46890 * 179.97438 * 20 17 16 22 22 C 1.50699 * 109.46937 * 180.02562 * 21 20 17 23 23 H 1.07990 * 120.00351 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99440 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00694 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99870 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47070 * 60.00043 * 26 24 22 28 28 H 1.48496 * 109.47519 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.47188 * 300.00371 * 26 24 22 30 30 H 1.08993 * 109.47589 * 174.24089 * 1 2 3 31 31 H 1.09006 * 109.47019 * 54.23508 * 1 2 3 32 32 H 1.09004 * 109.46948 * 294.24118 * 1 2 3 33 33 H 1.09002 * 111.00736 * 273.92229 * 4 2 1 34 34 H 1.09005 * 110.99939 * 37.77250 * 4 2 1 35 35 H 1.07999 * 119.99996 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.99465 * 180.20167 * 9 8 7 37 37 H 1.08005 * 119.99572 * 179.79315 * 10 9 8 38 38 H 1.08002 * 120.00184 * 179.97438 * 11 10 9 39 39 H 1.07998 * 119.99950 * 359.97438 * 12 7 5 40 40 H 1.09001 * 109.47197 * 300.73755 * 15 13 5 41 41 H 1.09007 * 109.47337 * 60.74151 * 15 13 5 42 42 H 1.09005 * 109.47031 * 180.73861 * 15 13 5 43 43 H 1.08999 * 109.47428 * 299.99456 * 20 17 16 44 44 H 1.08998 * 109.47012 * 60.00110 * 20 17 16 45 45 H 1.08999 * 109.46784 * 300.00026 * 21 20 17 46 46 H 1.08999 * 109.47090 * 59.99760 * 21 20 17 47 47 H 0.97002 * 120.00570 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7772 1.2267 5 6 3.4777 -1.2005 0.7328 6 1 4.1945 -0.3912 0.8717 7 6 3.9419 -2.4481 1.4393 8 6 3.1419 -3.5755 1.4484 9 6 3.5694 -4.7212 2.0931 10 6 4.7931 -4.7367 2.7359 11 6 5.5911 -3.6079 2.7308 12 6 5.1652 -2.4635 2.0828 13 6 3.2493 -1.4760 -0.7684 14 1 3.1022 -2.5433 -0.9336 15 6 4.4523 -0.9855 -1.5763 16 7 2.0431 -0.7372 -1.1691 17 16 1.3720 -0.7333 -2.6831 18 8 1.9124 -1.8890 -3.3089 19 8 -0.0241 -0.6128 -2.4474 20 6 2.0186 0.7727 -3.4607 21 6 1.4648 0.8908 -4.8821 22 6 2.0024 2.1415 -5.5284 23 1 2.6723 2.7873 -4.9804 24 6 1.6397 2.4607 -6.8197 25 7 0.8242 1.6740 -7.4873 26 14 2.3054 4.0114 -7.6206 27 1 3.7881 3.9454 -7.6703 28 1 1.7691 4.1253 -9.0007 29 1 1.8890 5.1960 -6.8278 30 1 -0.3634 -1.0224 -0.1031 31 1 -0.3633 0.6007 -0.8339 32 1 -0.3633 0.4220 0.9371 33 1 2.1399 -0.1286 2.1000 34 1 1.4510 -1.6496 1.4390 35 1 2.1841 -3.5620 0.9496 36 1 2.9458 -5.6029 2.0974 37 1 5.1256 -5.6308 3.2424 38 1 6.5469 -3.6200 3.2333 39 1 5.7885 -1.5816 2.0789 40 1 4.5886 0.0834 -1.4125 41 1 5.3472 -1.5193 -1.2560 42 1 4.2783 -1.1714 -2.6362 43 1 1.7136 1.6421 -2.8783 44 1 3.1068 0.7238 -3.4981 45 1 1.7701 0.0213 -5.4643 46 1 0.3765 0.9393 -4.8452 47 1 0.5688 1.8987 -8.3957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -58.280602 kcal Electronic energy + Delta-G solvation = -27823.403483 eV Core-core repulsion = 24097.571154 eV Total energy + Delta-G solvation = -3725.832329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.23179 -38.36622 -36.70215 -35.40549 -33.89128 -33.20916 -32.20429 -31.15160 -31.11477 -29.27065 -28.06503 -25.60621 -24.37683 -23.05816 -22.41943 -21.62898 -21.17258 -20.20598 -18.32161 -17.30074 -16.98371 -16.56937 -16.27952 -15.47992 -15.40399 -15.09148 -14.84027 -14.56610 -14.04479 -13.66716 -13.61090 -13.54510 -13.40817 -13.23496 -13.07469 -12.73138 -12.55067 -12.38677 -12.19744 -11.81271 -11.68993 -11.58456 -11.46663 -11.33969 -11.27066 -11.15591 -11.06167 -10.94838 -10.82665 -10.73628 -10.45704 -10.40958 -10.36398 -9.74690 -9.31919 -9.12186 -8.90497 -8.68659 -8.50191 -6.12328 -4.18043 0.76213 1.13622 1.19733 3.05551 3.26862 3.31689 3.33492 3.53862 4.26813 4.30067 4.36497 4.40624 4.50034 4.72268 4.78379 4.82652 4.92094 5.01561 5.02109 5.15505 5.22599 5.29051 5.30333 5.38169 5.39987 5.50449 5.55393 5.61819 5.68192 5.72511 5.76482 5.81112 5.84885 5.88386 6.03191 6.16659 6.20246 6.26779 6.31363 6.39023 6.44901 6.49902 6.55867 6.64659 6.79562 7.29783 7.36065 7.80399 8.17718 8.85104 9.46605 10.98693 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.002851 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.370764 B = 9819.301006 C =10201.770847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.057 4.057 6 H 0.094 0.906 7 C -0.069 4.069 8 C -0.113 4.113 9 C -0.118 4.118 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.114 4.114 13 C 0.161 3.839 14 H 0.081 0.919 15 C -0.181 4.181 16 N -1.011 6.011 17 S 2.602 3.398 18 O -0.963 6.963 19 O -0.958 6.958 20 C -0.591 4.591 21 C 0.029 3.971 22 C -0.520 4.520 23 H 0.061 0.939 24 C 0.058 3.942 25 N -0.891 5.891 26 Si 0.900 3.100 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 -7.871 22.920 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.039 3.961 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.077 4.077 6 H 0.112 0.888 7 C -0.069 4.069 8 C -0.131 4.131 9 C -0.136 4.136 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.132 4.132 13 C 0.055 3.945 14 H 0.099 0.901 15 C -0.239 4.239 16 N -0.847 5.847 17 S 2.702 3.298 18 O -0.953 6.953 19 O -0.949 6.949 20 C -0.724 4.724 21 C -0.010 4.010 22 C -0.560 4.560 23 H 0.079 0.921 24 C -0.145 4.145 25 N -0.529 5.529 26 Si 0.727 3.273 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.678 -8.593 22.334 24.844 hybrid contribution 0.823 1.363 -0.509 1.671 sum 7.501 -7.230 21.825 24.184 Atomic orbital electron populations 1.22368 0.93329 1.04269 1.02844 1.21654 0.94809 0.95142 0.84461 0.90710 1.22969 0.94645 1.00693 0.97172 1.21301 0.97832 0.95218 0.93302 0.88768 1.19690 0.94526 0.94834 0.97845 1.21100 0.99965 0.92755 0.99261 1.21156 0.96509 0.98077 0.97837 1.21145 0.94894 0.98344 0.99985 1.21125 0.99697 0.93318 0.99692 1.21060 0.95774 0.98399 0.98015 1.21261 0.84241 0.96362 0.92674 0.90145 1.22411 0.98008 1.02067 1.01432 1.59049 1.39266 1.60919 1.25498 1.05374 0.74614 0.77747 0.72019 1.93527 1.80395 1.46596 1.74832 1.93556 1.30082 1.87800 1.83413 1.30548 1.11809 1.18159 1.11902 1.18946 0.96961 0.99629 0.85422 1.20959 1.29241 1.07165 0.98606 0.92113 1.25066 0.94996 0.97186 0.97209 1.69943 1.33832 1.37446 1.11656 0.86534 0.79267 0.83049 0.78451 1.20077 1.21050 1.20061 0.91502 0.89794 0.92086 0.90014 0.90179 0.85840 0.86104 0.86314 0.86202 0.86030 0.91584 0.91011 0.91281 0.86363 0.86301 0.94968 0.94913 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 7.87 37.15 0.29 -1.84 16 2 C 0.15 1.66 3.87 -66.42 -0.26 1.40 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.12 -1.06 5.88 -24.59 -0.14 -1.21 16 5 C -0.06 -0.54 2.69 -89.94 -0.24 -0.78 16 6 H 0.09 0.77 7.66 -51.93 -0.40 0.37 16 7 C -0.07 -0.65 4.92 -104.62 -0.52 -1.16 16 8 C -0.11 -1.11 8.17 -39.58 -0.32 -1.43 16 9 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 10 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 11 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 12 C -0.11 -0.97 9.68 -39.58 -0.38 -1.35 16 13 C 0.16 1.98 2.79 -66.96 -0.19 1.79 16 14 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 15 C -0.18 -2.15 9.14 37.15 0.34 -1.81 16 16 N -1.01 -14.16 3.21 -97.52 -0.31 -14.48 16 17 S 2.60 48.28 5.26 -107.50 -0.56 47.71 16 18 O -0.96 -20.51 16.85 -57.54 -0.97 -21.48 16 19 O -0.96 -19.56 14.07 -57.54 -0.81 -20.37 16 20 C -0.59 -11.59 6.12 37.16 0.23 -11.36 16 21 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 22 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 23 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 24 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 25 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 26 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 31 H 0.08 1.23 6.44 -51.93 -0.33 0.90 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.75 6.68 -51.93 -0.35 0.40 16 35 H 0.12 1.21 7.28 -52.49 -0.38 0.83 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.12 0.83 7.98 -52.49 -0.42 0.41 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.97 7.31 -51.93 -0.38 0.59 16 43 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 44 H 0.12 2.13 8.10 -51.92 -0.42 1.71 16 45 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -33.88 386.11 -11.71 -45.59 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.65 Total: 1.42 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -2.94 Total: -34.57 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.42 Total: -40.37 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.78 Total: -41.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 48.28 SS G_CDS: -0.56 Total: 47.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.88 -11.71 -45.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.690 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds