Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49539 * 2 1 4 4 C 1.53190 * 109.49920 * 239.93864 * 2 1 3 5 5 N 1.46998 * 108.73528 * 294.65292 * 4 2 1 6 6 S 1.65594 * 120.61562 * 126.38721 * 5 4 2 7 7 O 1.42100 * 104.27975 * 26.09486 * 6 5 4 8 8 O 1.42103 * 104.27733 * 153.95152 * 6 5 4 9 9 C 1.81397 * 104.45067 * 270.02337 * 6 5 4 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 6 5 11 11 C 1.50694 * 109.47352 * 179.97438 * 10 9 6 12 12 H 1.08004 * 120.00122 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00561 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99678 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00494 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46893 * 89.99601 * 15 13 11 17 17 H 1.48495 * 109.47155 * 209.99829 * 15 13 11 18 18 H 1.48497 * 109.46695 * 329.99755 * 15 13 11 19 19 C 1.46925 * 118.75666 * 306.41077 * 5 4 2 20 20 C 1.53194 * 108.77380 * 53.60460 * 19 5 4 21 21 C 1.53031 * 109.31567 * 305.36551 * 20 19 5 22 22 H 1.08996 * 109.45163 * 301.34976 * 21 20 19 23 23 C 1.50702 * 109.46264 * 181.38518 * 21 20 19 24 24 C 1.38234 * 120.00103 * 136.05285 * 23 21 20 25 25 C 1.38235 * 119.99642 * 179.78955 * 24 23 21 26 26 C 1.38232 * 120.00258 * 0.46155 * 25 24 23 27 27 C 1.38234 * 119.99948 * 359.77020 * 26 25 24 28 28 C 1.38232 * 119.99772 * 316.32528 * 23 21 20 29 29 H 1.09001 * 109.47432 * 306.36024 * 1 2 3 30 30 H 1.09001 * 109.47154 * 186.35665 * 1 2 3 31 31 H 1.09006 * 109.47208 * 66.35737 * 1 2 3 32 32 H 1.09000 * 109.59022 * 54.46875 * 4 2 1 33 33 H 1.08997 * 109.58615 * 174.89971 * 4 2 1 34 34 H 1.08998 * 109.47162 * 299.99749 * 9 6 5 35 35 H 1.09000 * 109.47219 * 60.00276 * 9 6 5 36 36 H 1.08999 * 109.47621 * 300.00358 * 10 9 6 37 37 H 1.09011 * 109.47200 * 60.00043 * 10 9 6 38 38 H 0.96999 * 120.00108 * 180.02562 * 14 13 11 39 39 H 1.09008 * 109.58996 * 293.82451 * 19 5 4 40 40 H 1.08997 * 109.70824 * 173.46379 * 19 5 4 41 41 H 1.09008 * 109.49586 * 185.41190 * 20 19 5 42 42 H 1.08999 * 109.49530 * 65.32329 * 20 19 5 43 43 H 1.07998 * 119.99857 * 0.02562 * 24 23 21 44 44 H 1.07999 * 119.99934 * 180.25422 * 25 24 23 45 45 H 1.07998 * 120.00096 * 179.79179 * 26 25 24 46 46 H 1.08002 * 119.99684 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.00717 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6516 -2.1384 -1.1690 6 16 0.8191 -2.8559 -2.4077 7 8 1.1796 -2.1006 -3.5560 8 8 1.1525 -4.2333 -2.3024 9 6 -0.9268 -2.5902 -1.9934 10 6 -1.8088 -3.2148 -3.0764 11 6 -3.2592 -2.9947 -2.7319 12 1 -3.5255 -2.4621 -1.8309 13 6 -4.2465 -3.4731 -3.5670 14 7 -3.9224 -4.1212 -4.6645 15 14 -6.0445 -3.1996 -3.1404 16 1 -6.5056 -1.9201 -3.7368 17 1 -6.8572 -4.3188 -3.6805 18 1 -6.1998 -3.1422 -1.6647 19 6 2.0140 -2.9040 0.0316 20 6 1.5030 -2.1553 1.2666 21 6 2.0408 -0.7227 1.2486 22 1 3.1305 -0.7442 1.2354 23 6 1.5679 0.0067 2.4796 24 6 2.4467 0.7998 3.1934 25 6 2.0117 1.4723 4.3201 26 6 0.7005 1.3440 4.7385 27 6 -0.1771 0.5470 4.0274 28 6 0.2568 -0.1220 2.8982 29 1 -0.3634 0.6093 0.8276 30 1 -0.3633 -1.0213 0.1138 31 1 -0.3634 0.4121 -0.9414 32 1 1.6008 -0.2724 -2.1390 33 1 3.1274 -0.6459 -1.2981 34 1 -1.1470 -3.0549 -1.0323 35 1 -1.1275 -1.5205 -1.9342 36 1 -1.5886 -2.7499 -4.0373 37 1 -1.6083 -4.2847 -3.1360 38 1 -4.6169 -4.4575 -5.2522 39 1 3.0980 -3.0042 0.0877 40 1 1.5573 -3.8927 -0.0112 41 1 1.8480 -2.6622 2.1679 42 1 0.4133 -2.1351 1.2547 43 1 3.4721 0.8971 2.8686 44 1 2.6972 2.0953 4.8754 45 1 0.3616 1.8668 5.6206 46 1 -1.2014 0.4465 4.3546 47 1 -0.4289 -0.7449 2.3429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = -62.176009 kcal Electronic energy + Delta-G solvation = -28045.962805 eV Core-core repulsion = 24319.961558 eV Total energy + Delta-G solvation = -3726.001247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39032 -38.27202 -36.66207 -35.44387 -33.99338 -33.80895 -32.09276 -31.20080 -31.13407 -29.87213 -27.15724 -25.59493 -24.73626 -23.47344 -22.28995 -21.63796 -21.40672 -19.39719 -18.32264 -17.65176 -16.97694 -16.50120 -15.83281 -15.52850 -15.46281 -15.26478 -14.81121 -14.66566 -14.55397 -14.51391 -13.79935 -13.60334 -13.37882 -13.30710 -13.05539 -12.58967 -12.53203 -12.24622 -12.00039 -11.94305 -11.72083 -11.58312 -11.44673 -11.40072 -11.21572 -11.08331 -11.06402 -10.94524 -10.91158 -10.66815 -10.45400 -10.37056 -10.21195 -9.74524 -9.30484 -9.06943 -8.82782 -8.72788 -8.50470 -6.12522 -4.17970 0.76934 1.18005 1.22436 3.02818 3.25514 3.31884 3.34318 3.59621 4.27989 4.35828 4.44105 4.45486 4.53466 4.73148 4.79824 4.81989 4.93245 4.99243 5.01152 5.13825 5.17097 5.22703 5.30549 5.34315 5.46329 5.55295 5.58360 5.64526 5.66194 5.70486 5.76543 5.80908 5.84823 5.88973 5.93517 6.02502 6.04776 6.24583 6.29034 6.31281 6.35379 6.50853 6.52453 6.71161 6.83220 7.30228 7.36299 7.80431 8.17682 8.85403 9.46738 10.98535 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003571 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.602158 B = 7839.633034 C = 9538.587905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 H 0.081 0.919 4 C 0.128 3.872 5 N -1.004 6.004 6 S 2.589 3.411 7 O -0.965 6.965 8 O -0.965 6.965 9 C -0.591 4.591 10 C 0.029 3.971 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.123 3.877 20 C -0.134 4.134 21 C -0.040 4.040 22 H 0.080 0.920 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.113 4.113 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.184 10.399 17.617 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.115 4.115 3 H 0.099 0.901 4 C 0.002 3.998 5 N -0.840 5.840 6 S 2.688 3.312 7 O -0.955 6.955 8 O -0.955 6.955 9 C -0.724 4.724 10 C -0.010 4.010 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.002 4.002 20 C -0.172 4.172 21 C -0.059 4.059 22 H 0.098 0.902 23 C -0.070 4.070 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.130 4.130 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.575 9.853 16.709 23.676 hybrid contribution -1.513 0.488 0.726 1.747 sum 12.062 10.341 17.435 23.589 Atomic orbital electron populations 1.22248 0.94689 1.02890 1.02487 1.21475 0.96925 0.99193 0.93946 0.90106 1.21435 1.00231 0.79987 0.98141 1.57954 1.72072 1.19546 1.34451 1.05748 0.78094 0.73895 0.73505 1.93531 1.82516 1.72244 1.47213 1.93532 1.83155 1.32969 1.85892 1.30571 1.20362 1.10515 1.11000 1.18949 0.94711 0.96222 0.91106 1.20990 0.89684 1.36892 1.08218 0.92073 1.25066 0.99547 0.94919 0.94942 1.69955 1.33575 1.36917 1.12420 0.86486 0.84318 0.77921 0.78663 1.20473 1.21018 1.19774 1.21341 1.00731 0.94713 0.83439 1.22124 1.02083 0.94860 0.98171 1.20121 1.00181 0.94140 0.91457 0.90206 1.19872 0.93795 0.97257 0.96111 1.21047 0.99417 0.97557 0.95654 1.21103 0.96028 0.99817 0.97051 1.21125 0.93933 0.99472 1.00050 1.21189 0.99690 0.97349 0.95609 1.21229 0.95689 0.99713 0.96416 0.91808 0.91488 0.92146 0.88862 0.91329 0.86366 0.86130 0.94954 0.94964 0.92541 0.91353 0.88917 0.90691 0.90498 0.86301 0.86406 0.86462 0.86195 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 6.85 37.16 0.25 -1.52 16 2 C -0.10 -0.91 2.71 -90.50 -0.24 -1.15 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.13 1.43 5.71 -3.67 -0.02 1.41 16 5 N -1.00 -13.21 2.77 -113.47 -0.31 -13.53 16 6 S 2.59 46.65 5.41 -107.50 -0.58 46.07 16 7 O -0.96 -19.98 16.73 -57.54 -0.96 -20.95 16 8 O -0.97 -19.98 16.73 -57.54 -0.96 -20.95 16 9 C -0.59 -11.17 5.33 37.16 0.20 -10.97 16 10 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 11 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 19 C 0.12 1.36 6.31 -3.71 -0.02 1.34 16 20 C -0.13 -1.24 4.59 -26.61 -0.12 -1.36 16 21 C -0.04 -0.35 2.19 -91.73 -0.20 -0.55 16 22 H 0.08 0.64 7.96 -51.93 -0.41 0.22 16 23 C -0.07 -0.64 4.67 -104.62 -0.49 -1.13 16 24 C -0.12 -1.01 9.67 -39.58 -0.38 -1.39 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 26 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 28 C -0.11 -1.07 7.02 -39.58 -0.28 -1.34 16 29 H 0.06 0.64 5.90 -51.93 -0.31 0.34 16 30 H 0.07 0.74 4.59 -51.93 -0.24 0.50 16 31 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.09 1.12 7.10 -51.93 -0.37 0.75 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 35 H 0.12 2.06 6.98 -51.92 -0.36 1.70 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.14 -51.92 -0.42 0.44 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.09 1.09 7.10 -51.93 -0.37 0.72 16 41 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.08 0.74 4.87 -51.93 -0.25 0.49 16 43 H 0.12 0.83 8.01 -52.49 -0.42 0.41 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.13 1.18 5.50 -52.48 -0.29 0.90 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -34.05 373.65 -11.73 -45.78 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.20 Total: 0.94 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: -3.05 Total: -33.38 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.42 Total: -39.23 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.92 Total: -41.89 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 46.65 SS G_CDS: -0.58 Total: 46.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.05 -11.73 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.400 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds