Wall clock time and date at job start Tue Mar 31 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47128 * 2 1 4 4 O 1.42897 * 109.47405 * 179.97438 * 3 2 1 5 5 C 1.35980 * 117.00352 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.06618 * 0.02641 * 5 4 3 7 7 C 1.38436 * 119.98972 * 179.97438 * 6 5 4 8 8 F 1.35101 * 119.93614 * 179.97438 * 7 6 5 9 9 C 1.38465 * 120.12464 * 359.72828 * 7 6 5 10 10 C 1.38213 * 120.13719 * 0.54573 * 9 7 6 11 11 C 1.38681 * 120.00590 * 359.45531 * 10 9 7 12 12 N 1.40281 * 120.06136 * 180.25404 * 11 10 9 13 13 C 1.34778 * 120.00105 * 337.13282 * 12 11 10 14 14 O 1.21595 * 119.99501 * 1.87946 * 13 12 11 15 15 N 1.34769 * 120.00135 * 181.87003 * 13 12 11 16 16 C 1.46502 * 120.00066 * 9.25357 * 15 13 12 17 17 C 1.50701 * 109.47179 * 90.00016 * 16 15 13 18 18 H 1.07996 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00183 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47061 * 89.99950 * 21 19 17 23 23 H 1.48501 * 109.46971 * 210.00255 * 21 19 17 24 24 H 1.48507 * 109.46893 * 330.00101 * 21 19 17 25 25 C 1.46505 * 119.99948 * 189.25302 * 15 13 12 26 26 C 1.52994 * 117.49851 * 13.90233 * 25 15 13 27 27 C 1.52997 * 117.49732 * 305.27836 * 25 15 13 28 28 H 1.08993 * 109.47372 * 300.00436 * 1 2 3 29 29 H 1.09006 * 109.47310 * 60.00492 * 1 2 3 30 30 H 1.09005 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47640 * 240.00402 * 2 1 3 32 32 H 1.08997 * 109.47355 * 119.99778 * 2 1 3 33 33 H 1.09000 * 109.47251 * 59.99919 * 3 2 1 34 34 H 1.09001 * 109.47483 * 299.99803 * 3 2 1 35 35 H 1.07995 * 120.00210 * 359.95666 * 6 5 4 36 36 H 1.08000 * 119.93087 * 180.29562 * 9 7 6 37 37 H 1.07996 * 119.99506 * 179.72420 * 10 9 7 38 38 H 0.97008 * 120.00063 * 157.14630 * 12 11 10 39 39 H 1.09009 * 109.47158 * 209.99780 * 16 15 13 40 40 H 1.09003 * 109.46966 * 329.99851 * 16 15 13 41 41 H 0.97008 * 119.99661 * 180.02562 * 20 19 17 42 42 H 1.09002 * 115.54877 * 159.61159 * 25 15 13 43 43 H 1.08996 * 117.49928 * 0.02562 * 26 25 15 44 44 H 1.09006 * 117.49704 * 145.02262 * 26 25 15 45 45 H 1.08997 * 117.49871 * 214.98058 * 27 25 15 46 46 H 1.08999 * 117.50130 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0863 2.6541 0.0001 6 6 3.3331 3.8169 -0.0003 7 6 3.9632 5.0496 -0.0003 8 9 3.2277 6.1828 -0.0012 9 6 5.3459 5.1232 0.0060 10 6 6.1024 3.9665 0.0007 11 6 5.4770 2.7287 0.0006 12 7 6.2437 1.5540 0.0007 13 6 7.5127 1.5774 -0.4527 14 8 8.0042 2.6237 -0.8299 15 7 8.2369 0.4414 -0.4879 16 6 7.5906 -0.8476 -0.2285 17 6 7.0866 -1.4267 -1.5253 18 1 7.2326 -0.8883 -2.4500 19 6 6.4381 -2.6434 -1.5310 20 7 5.9978 -3.1486 -2.6626 21 14 6.1848 -3.5744 0.0686 22 1 4.8927 -3.1690 0.6780 23 1 6.1666 -5.0337 -0.2056 24 1 7.2939 -3.2604 1.0050 25 6 9.6704 0.4954 -0.7854 26 6 10.3532 1.8632 -0.7257 27 6 10.0978 1.1940 -2.0777 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 2.2545 3.7617 -0.0010 36 1 5.8342 6.0865 0.0108 37 1 7.1807 4.0266 0.0011 38 1 5.8605 0.7247 0.3270 39 1 8.3114 -1.5319 0.2191 40 1 6.7536 -0.7034 0.4547 41 1 5.5411 -4.0045 -2.6665 42 1 10.2497 -0.3711 -0.4664 43 1 9.7361 2.7228 -0.4646 44 1 11.3821 1.8968 -0.3672 45 1 10.9585 0.7875 -2.6087 46 1 9.3124 1.6132 -2.7067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096471185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:44 Heat of formation + Delta-G solvation = -36.826891 kcal Electronic energy + Delta-G solvation = -29878.399881 eV Core-core repulsion = 25685.003341 eV Total energy + Delta-G solvation = -4193.396540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.77639 -40.75459 -39.62955 -37.56860 -36.12853 -34.83309 -33.94778 -33.38412 -32.23135 -30.18247 -28.79737 -27.71336 -26.58062 -23.56896 -22.81952 -22.44615 -21.83865 -21.81950 -21.15849 -19.49262 -18.47300 -17.57347 -17.06658 -16.93553 -16.45451 -16.32076 -15.72903 -15.44574 -15.28904 -14.93121 -14.65008 -14.36561 -14.28862 -14.09793 -13.95881 -13.30418 -13.28302 -12.85373 -12.65048 -12.43792 -12.30017 -12.25429 -12.01496 -11.94606 -11.43776 -11.42566 -11.28694 -11.05123 -10.93388 -10.81349 -10.69504 -10.58173 -10.09689 -9.96401 -9.80234 -9.60640 -9.02022 -8.75846 -8.59299 -7.77429 -7.34223 -6.24034 -4.26168 1.26273 1.37871 2.98344 3.12605 3.14833 3.20160 3.23410 3.40976 3.90393 4.22003 4.23945 4.37121 4.56789 4.71774 4.81089 4.88271 5.03981 5.07106 5.09887 5.11001 5.29722 5.36623 5.39659 5.47783 5.54062 5.60391 5.62730 5.85848 5.91000 6.00737 6.07040 6.08444 6.13774 6.19102 6.24408 6.33242 6.41757 6.49241 6.58125 6.73089 6.89462 7.00550 7.22457 7.35937 7.46123 7.52966 8.21478 8.45382 8.83754 9.01711 9.34044 10.88641 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.007875 B = 0.005386 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.707968 B = 5197.797937 C = 8289.398182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.061 3.939 4 O -0.304 6.304 5 C 0.123 3.877 6 C -0.226 4.226 7 C 0.100 3.900 8 F -0.144 7.144 9 C -0.167 4.167 10 C -0.082 4.082 11 C 0.149 3.851 12 N -0.668 5.668 13 C 0.715 3.285 14 O -0.589 6.589 15 N -0.576 5.576 16 C 0.214 3.786 17 C -0.539 4.539 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.887 5.887 21 Si 0.868 3.132 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.264 1.264 25 C 0.102 3.898 26 C -0.202 4.202 27 C -0.184 4.184 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.177 0.823 38 H 0.418 0.582 39 H 0.039 0.961 40 H 0.021 0.979 41 H 0.266 0.734 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 9.714 8.295 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.014 4.014 4 O -0.218 6.218 5 C 0.074 3.926 6 C -0.246 4.246 7 C 0.080 3.920 8 F -0.123 7.123 9 C -0.187 4.187 10 C -0.103 4.103 11 C 0.051 3.949 12 N -0.315 5.315 13 C 0.418 3.582 14 O -0.471 6.471 15 N -0.307 5.307 16 C 0.093 3.907 17 C -0.577 4.577 18 H 0.098 0.902 19 C -0.125 4.125 20 N -0.525 5.525 21 Si 0.694 3.306 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.189 1.189 25 C -0.004 4.004 26 C -0.239 4.239 27 C -0.223 4.223 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.194 0.806 38 H 0.257 0.743 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.625 9.965 7.948 13.560 hybrid contribution -0.921 -0.945 0.659 1.475 sum -5.546 9.020 8.607 13.646 Atomic orbital electron populations 1.21672 0.94386 1.02500 1.01884 1.21512 0.95785 0.94734 1.04524 1.22887 0.78181 0.99090 1.01205 1.86136 1.21498 1.25622 1.88523 1.18337 0.90138 0.84597 0.99513 1.20820 1.00567 0.90658 1.12546 1.17317 0.89211 0.81287 1.04180 1.91459 1.77393 1.49298 1.94171 1.20982 0.91309 0.99954 1.06414 1.21625 1.03067 0.88434 0.97168 1.17063 0.86440 0.87289 1.04136 1.42741 1.12646 1.11133 1.64999 1.15739 0.80364 0.84055 0.78020 1.90549 1.70028 1.30726 1.55835 1.46478 1.07122 1.06040 1.71049 1.19770 0.92831 0.80537 0.97543 1.21346 1.37597 1.05177 0.93610 0.90227 1.24859 0.94728 0.96879 0.96069 1.69894 1.37914 1.19018 1.25654 0.86983 0.79383 0.79952 0.84250 1.19726 1.20794 1.18900 1.21342 0.80497 0.96707 1.01815 1.23877 1.00419 0.98673 1.00928 1.23150 1.02957 1.04585 0.91573 0.92612 0.92423 0.91718 0.90084 0.90724 0.92155 0.91934 0.84324 0.84659 0.80623 0.74298 0.94282 0.96144 0.92367 0.85719 0.84610 0.90101 0.89425 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.15 0.37 -0.95 16 2 C -0.13 -1.50 6.30 -26.73 -0.17 -1.67 16 3 C 0.06 0.74 4.74 37.16 0.18 0.92 16 4 O -0.30 -4.85 9.53 -19.68 -0.19 -5.04 16 5 C 0.12 1.95 6.70 -39.09 -0.26 1.68 16 6 C -0.23 -3.14 9.01 -39.40 -0.36 -3.49 16 7 C 0.10 1.41 7.30 -39.42 -0.29 1.13 16 8 F -0.14 -1.98 17.26 2.25 0.04 -1.94 16 9 C -0.17 -2.32 10.02 -39.51 -0.40 -2.72 16 10 C -0.08 -1.31 8.81 -39.43 -0.35 -1.65 16 11 C 0.15 2.56 6.50 -83.44 -0.54 2.01 16 12 N -0.67 -12.54 5.20 -14.09 -0.07 -12.61 16 13 C 0.71 14.34 7.96 -86.92 -0.69 13.65 16 14 O -0.59 -11.85 9.01 5.28 0.05 -11.80 16 15 N -0.58 -11.64 2.82 -173.16 -0.49 -12.13 16 16 C 0.21 4.65 4.26 -5.19 -0.02 4.63 16 17 C -0.54 -14.17 9.94 -34.44 -0.34 -14.51 16 18 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.89 -25.64 13.96 55.43 0.77 -24.86 16 21 Si 0.87 19.35 27.47 -169.99 -4.67 14.68 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 25 C 0.10 1.83 6.61 -67.93 -0.45 1.38 16 26 C -0.20 -3.23 9.61 -26.73 -0.26 -3.49 16 27 C -0.18 -3.21 9.90 -26.73 -0.26 -3.47 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.61 7.66 -51.93 -0.40 0.22 16 34 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.14 1.61 6.30 -52.49 -0.33 1.28 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.18 2.91 5.39 -52.49 -0.28 2.63 16 38 H 0.42 7.87 5.93 -40.82 -0.24 7.63 16 39 H 0.04 0.82 7.10 -51.92 -0.37 0.46 16 40 H 0.02 0.43 5.47 -51.93 -0.28 0.15 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.13 2.02 8.10 -51.93 -0.42 1.60 16 43 H 0.14 2.41 5.17 -52.25 -0.27 2.14 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.10 1.92 7.68 -51.93 -0.40 1.52 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -29.21 376.92 -9.18 -38.39 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.36 Total: 14.19 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.94 Total: -4.55 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.21 Total: -49.60 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.14 Total: -16.84 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.67 Total: 14.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.21 -9.18 -38.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096471185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.566 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds