Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48505 * 109.46999 * 240.00255 * 3 2 1 5 5 H 1.48499 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47321 * 120.00230 * 3 2 1 7 7 C 1.38946 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99739 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00397 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99650 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00379 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47475 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00157 * 175.61747 * 13 12 10 15 15 H 1.08997 * 109.47454 * 38.01692 * 14 13 12 16 16 C 1.50702 * 109.47287 * 158.02075 * 14 13 12 17 17 C 1.38267 * 119.99459 * 211.78757 * 16 14 13 18 18 C 1.38210 * 120.02827 * 179.97438 * 17 16 14 19 19 C 1.38240 * 120.01463 * 359.97316 * 18 17 16 20 20 C 1.38332 * 119.98392 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01351 * 180.02562 * 20 19 18 22 22 C 1.38192 * 119.99133 * 31.50877 * 16 14 13 23 23 C 1.52998 * 109.47114 * 278.01700 * 14 13 12 24 24 C 1.54268 * 110.03347 * 297.53053 * 23 14 13 25 25 C 1.54892 * 104.19687 * 217.10265 * 24 23 14 26 26 C 1.54888 * 102.74724 * 37.93792 * 25 24 23 27 27 C 1.53877 * 110.03621 * 180.36020 * 23 14 13 28 28 H 0.97001 * 120.00264 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99409 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47183 * 59.99702 * 12 10 9 31 31 H 1.09004 * 109.46946 * 300.00144 * 12 10 9 32 32 H 1.00894 * 111.00072 * 51.65548 * 13 12 10 33 33 H 1.08003 * 119.98289 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.99829 * 179.97438 * 18 17 16 35 35 H 1.08000 * 120.01061 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.00700 * 0.02562 * 22 16 14 37 37 H 1.09000 * 110.01378 * 58.96918 * 23 14 13 38 38 H 1.09003 * 110.48620 * 335.78146 * 24 23 14 39 39 H 1.08995 * 110.48587 * 98.42583 * 24 23 14 40 40 H 1.09000 * 110.75283 * 279.63087 * 25 24 23 41 41 H 1.08995 * 110.91280 * 156.33137 * 25 24 23 42 42 H 1.09002 * 110.48866 * 203.37520 * 26 25 24 43 43 H 1.09004 * 110.59620 * 80.79588 * 26 25 24 44 44 H 1.09003 * 110.03223 * 238.57321 * 27 23 14 45 45 H 1.09000 * 110.03052 * 359.95183 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 0.0007 14 6 1.5013 -7.2682 0.1049 15 1 0.5814 -7.2319 -0.4787 16 6 2.3895 -8.3643 -0.4248 17 6 1.8314 -9.4687 -1.0416 18 6 2.6454 -10.4742 -1.5282 19 6 4.0183 -10.3758 -1.3990 20 6 4.5772 -9.2711 -0.7820 21 17 6.3011 -9.1465 -0.6199 22 6 3.7619 -8.2626 -0.2992 23 6 1.1643 -7.5486 1.5708 24 6 2.4611 -7.6642 2.3983 25 6 2.1583 -8.7840 3.4247 26 6 1.3234 -9.7911 2.5953 27 6 0.4409 -8.9010 1.6961 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0002 30 1 0.6176 -4.9205 -0.8903 31 1 0.6169 -4.9209 0.8897 32 1 2.8771 -5.8746 0.7400 33 1 0.7590 -9.5458 -1.1432 34 1 2.2090 -11.3369 -2.0096 35 1 4.6543 -11.1613 -1.7796 36 1 4.1979 -7.3979 0.1790 37 1 0.5366 -6.7512 1.9684 38 1 3.2974 -7.9482 1.7594 39 1 2.6723 -6.7250 2.9096 40 1 1.5759 -8.3951 4.2600 41 1 3.0795 -9.2458 3.7798 42 1 0.7044 -10.4042 3.2504 43 1 1.9742 -10.4204 1.9882 44 1 -0.5375 -8.7599 2.1553 45 1 0.3291 -9.3571 0.7124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096492194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = -29.984137 kcal Electronic energy + Delta-G solvation = -26875.809171 eV Core-core repulsion = 23111.045730 eV Total energy + Delta-G solvation = -3764.763441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48339 -38.37269 -37.88559 -36.42851 -35.20012 -33.86543 -31.62031 -31.15783 -30.97749 -29.06546 -28.72053 -26.68303 -24.74020 -23.67581 -22.53577 -21.57683 -20.60802 -19.51208 -19.25820 -17.93584 -17.19329 -16.28340 -15.95932 -15.70329 -15.64477 -15.21327 -14.71982 -14.42773 -14.10089 -13.96121 -13.91036 -13.52936 -13.42746 -13.22837 -13.05628 -12.67266 -12.25189 -11.84309 -11.67447 -11.51674 -11.50324 -11.47420 -11.20828 -11.14410 -11.10066 -11.00231 -10.96038 -10.80799 -10.64682 -10.44301 -10.38090 -10.21454 -9.50377 -8.88246 -8.73300 -8.46729 -8.07149 -7.96195 -6.42001 -3.82815 1.08828 1.22595 2.10718 3.20225 3.25919 3.30425 3.53818 3.89943 4.06243 4.26758 4.45815 4.54072 4.59238 4.72764 4.78735 4.94637 5.11099 5.16287 5.18130 5.23929 5.26105 5.35840 5.38480 5.48990 5.54678 5.58133 5.61239 5.68566 5.79075 5.82288 5.86777 5.88095 5.99459 6.01457 6.12366 6.15094 6.19226 6.22875 6.26279 6.33014 6.46286 6.71246 7.19381 7.54895 7.61476 8.05658 8.60570 9.17405 9.53643 10.04891 10.75629 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002911 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.669221 B = 9616.558946 C =10636.722792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.661 5.661 14 C 0.129 3.871 15 H 0.090 0.910 16 C -0.040 4.040 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.120 4.120 20 C -0.035 4.035 21 Cl -0.076 7.076 22 C -0.085 4.085 23 C -0.120 4.120 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.121 4.121 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.352 0.648 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -23.042 2.032 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.293 5.293 14 C 0.018 3.982 15 H 0.108 0.892 16 C -0.041 4.041 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.061 4.061 21 Cl -0.047 7.047 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.173 4.173 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.173 0.827 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.921 -22.838 1.355 22.896 hybrid contribution -0.399 0.955 0.888 1.364 sum 0.522 -21.883 2.243 22.004 Atomic orbital electron populations 1.69602 1.05933 1.28271 1.50523 1.25254 0.95625 0.99708 0.97275 0.85924 0.78776 0.80461 0.79105 1.19860 1.20980 1.19906 1.19659 0.93358 0.82242 1.47694 0.87964 1.41842 1.09184 1.04578 1.64259 1.19788 0.88385 0.84736 0.84570 1.90527 1.13735 1.87035 1.55503 1.21702 0.94520 0.90759 1.01258 1.60290 1.15770 0.99205 1.54046 1.20591 0.95428 0.88077 0.94096 0.89157 1.19650 0.93154 0.94801 0.96535 1.21064 0.99957 0.93806 0.98348 1.20983 0.92684 0.99150 1.00049 1.20973 0.95458 0.97258 1.00149 1.20933 0.84595 0.97357 1.03233 1.98370 1.11588 1.98105 1.96628 1.20933 0.92807 0.97599 0.99002 1.22467 0.97372 0.98319 0.95817 1.22680 0.97830 0.99045 0.97730 1.22426 0.99588 0.96177 0.97630 1.22303 0.98121 0.97518 0.97883 1.22255 0.98399 0.94850 1.00391 0.91819 0.77461 0.89508 0.93658 0.82653 0.85608 0.85435 0.85454 0.84356 0.90387 0.90192 0.91580 0.91784 0.91839 0.92172 0.91776 0.92062 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 10 C 0.44 10.26 7.81 -10.99 -0.09 10.18 16 11 O -0.58 -15.71 15.68 5.55 0.09 -15.62 16 12 C 0.05 0.86 5.98 -4.98 -0.03 0.83 16 13 N -0.66 -10.34 5.24 -109.23 -0.57 -10.91 16 14 C 0.13 1.53 2.05 -68.87 -0.14 1.39 16 15 H 0.09 1.02 7.83 -51.93 -0.41 0.61 16 16 C -0.04 -0.47 4.21 -104.63 -0.44 -0.91 16 17 C -0.11 -1.09 8.22 -39.58 -0.33 -1.41 16 18 C -0.11 -0.98 10.05 -39.59 -0.40 -1.38 16 19 C -0.12 -1.20 9.83 -39.55 -0.39 -1.58 16 20 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 21 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 22 C -0.08 -1.07 7.04 -39.55 -0.28 -1.35 16 23 C -0.12 -1.27 2.82 -89.50 -0.25 -1.53 16 24 C -0.14 -1.50 4.98 -25.07 -0.12 -1.62 16 25 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 26 C -0.12 -1.06 6.83 -25.07 -0.17 -1.23 16 27 C -0.12 -1.08 5.99 -25.61 -0.15 -1.23 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.05 0.70 7.15 -51.93 -0.37 0.32 16 32 H 0.35 5.82 6.12 -39.29 -0.24 5.58 16 33 H 0.13 0.97 7.13 -52.48 -0.37 0.59 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.14 1.94 6.27 -52.49 -0.33 1.61 16 37 H 0.08 0.89 7.21 -51.93 -0.37 0.51 16 38 H 0.08 0.93 4.31 -51.93 -0.22 0.71 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.58 4.96 -51.93 -0.26 0.33 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -30.43 370.74 -10.42 -40.85 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.22 Total: 14.21 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.45 Total: -9.83 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.09 Total: -48.86 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.43 -10.42 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.864 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds