Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48496 * 109.46901 * 269.99728 * 3 2 1 5 5 H 1.48499 * 109.47251 * 29.99681 * 3 2 1 6 6 H 1.48498 * 109.46863 * 149.99814 * 3 2 1 7 7 C 1.38951 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00132 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99838 * 180.02562 * 7 2 1 10 10 C 1.34776 * 119.99847 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00336 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99860 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47167 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00012 * 176.87567 * 13 12 10 15 15 H 1.09000 * 109.47588 * 0.21932 * 14 13 12 16 16 C 1.50703 * 109.46983 * 240.21977 * 14 13 12 17 17 C 1.38262 * 119.99506 * 320.23104 * 16 14 13 18 18 C 1.38230 * 120.02481 * 180.23080 * 17 16 14 19 19 C 1.38236 * 120.01317 * 359.79277 * 18 17 16 20 20 C 1.38337 * 119.98662 * 359.97438 * 19 18 17 21 21 Cl 1.73594 * 120.01188 * 180.02562 * 20 19 18 22 22 C 1.38201 * 119.99027 * 140.00218 * 16 14 13 23 23 C 1.53007 * 109.47305 * 120.22188 * 14 13 12 24 24 C 1.54265 * 110.03127 * 302.29030 * 23 14 13 25 25 C 1.54955 * 104.16156 * 217.13201 * 24 23 14 26 26 C 1.54891 * 102.77538 * 37.88941 * 25 24 23 27 27 C 1.53871 * 110.03493 * 185.06833 * 23 14 13 28 28 H 0.97008 * 119.99465 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00085 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47376 * 59.99833 * 12 10 9 31 31 H 1.09010 * 109.47083 * 299.99793 * 12 10 9 32 32 H 1.00901 * 111.00094 * 300.83155 * 13 12 10 33 33 H 1.07991 * 119.98911 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.98906 * 179.77126 * 18 17 16 35 35 H 1.08000 * 120.00685 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.00443 * 0.02562 * 22 16 14 37 37 H 1.08999 * 110.01608 * 63.67852 * 23 14 13 38 38 H 1.09003 * 110.48717 * 335.78535 * 24 23 14 39 39 H 1.09006 * 110.48374 * 98.42256 * 24 23 14 40 40 H 1.08995 * 110.72634 * 279.57731 * 25 24 23 41 41 H 1.08998 * 110.92840 * 156.29061 * 25 24 23 42 42 H 1.09002 * 110.48826 * 203.40751 * 26 25 24 43 43 H 1.08999 * 110.59973 * 80.81596 * 26 25 24 44 44 H 1.08992 * 110.03427 * 238.56869 * 27 23 14 45 45 H 1.08994 * 110.03171 * 0.02562 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2035 0.0011 10 6 4.0535 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0011 12 6 5.5605 -2.3708 0.0022 13 7 6.0501 -3.7558 0.0014 14 6 7.5167 -3.7956 -0.0723 15 1 7.9067 -2.7784 -0.1057 16 6 7.9373 -4.5359 -1.3158 17 6 7.2482 -5.6667 -1.7133 18 6 7.6363 -6.3489 -2.8512 19 6 8.7112 -5.8984 -3.5946 20 6 9.3981 -4.7643 -3.1999 21 17 10.7475 -4.1977 -4.1334 22 6 9.0088 -4.0816 -2.0610 23 6 8.0700 -4.5137 1.1604 24 6 7.5992 -3.7991 2.4439 25 6 8.8150 -3.8963 3.3996 26 6 10.0183 -3.7015 2.4440 27 6 9.6075 -4.4522 1.1604 28 1 -0.4850 0.8402 -0.0004 29 1 3.8648 -0.3635 0.0007 30 1 5.9233 -1.8574 0.8927 31 1 5.9246 -1.8566 -0.8873 32 1 5.7148 -4.2583 0.8095 33 1 6.4089 -6.0195 -1.1325 34 1 7.0999 -7.2342 -3.1592 35 1 9.0147 -6.4318 -4.4833 36 1 9.5449 -3.1964 -1.7521 37 1 7.7379 -5.5518 1.1678 38 1 7.3611 -2.7562 2.2345 39 1 6.7359 -4.3102 2.8703 40 1 8.8543 -4.8762 3.8754 41 1 8.7852 -3.1055 4.1492 42 1 10.9197 -4.1412 2.8710 43 1 10.1738 -2.6433 2.2339 44 1 10.0215 -5.4604 1.1688 45 1 9.9595 -3.9104 0.2826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096492195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -28.683965 kcal Electronic energy + Delta-G solvation = -26592.688886 eV Core-core repulsion = 22827.981824 eV Total energy + Delta-G solvation = -3764.707062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18488 -38.57311 -38.12027 -36.57285 -35.25684 -33.91537 -31.88664 -31.59025 -30.73565 -29.25434 -28.77136 -26.78506 -24.67850 -23.50870 -22.65891 -21.24744 -20.81183 -19.89239 -19.28588 -18.32714 -17.11507 -16.50197 -15.98509 -15.79082 -15.44326 -15.29865 -14.87882 -14.72196 -14.16330 -13.86699 -13.71166 -13.67341 -13.44376 -13.41757 -13.12095 -12.50926 -12.39077 -12.08718 -11.91668 -11.83663 -11.56939 -11.43937 -11.32871 -11.25963 -11.22280 -11.15925 -11.12019 -10.81145 -10.75035 -10.60418 -10.57491 -9.97945 -9.57309 -8.97040 -8.69913 -8.58601 -8.19986 -8.15280 -6.31364 -3.82675 1.15259 1.19658 2.01053 3.01733 3.06787 3.14778 3.56042 3.73858 4.00946 4.10186 4.32263 4.40215 4.54787 4.68932 4.75271 4.91260 5.01560 5.04531 5.16106 5.22671 5.24349 5.30462 5.33711 5.38870 5.42565 5.49280 5.55080 5.61296 5.69796 5.71787 5.74770 5.78711 5.83568 5.89729 5.93137 6.02899 6.11512 6.13695 6.19336 6.35593 6.49731 6.77026 7.08473 7.53016 7.58212 8.14321 8.59625 8.94921 9.42364 9.82680 10.81809 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.003145 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.785152 B = 8902.293401 C =10197.343353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.563 6.563 12 C 0.049 3.951 13 N -0.660 5.660 14 C 0.131 3.869 15 H 0.073 0.927 16 C -0.050 4.050 17 C -0.078 4.078 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.038 4.038 21 Cl -0.082 7.082 22 C -0.110 4.110 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.118 4.118 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.354 0.646 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.061 -7.939 0.231 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.445 6.445 12 C -0.084 4.084 13 N -0.292 5.292 14 C 0.020 3.980 15 H 0.091 0.909 16 C -0.051 4.051 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.064 4.064 21 Cl -0.053 7.053 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.439 -8.556 -0.522 24.957 hybrid contribution 0.878 1.833 0.632 2.128 sum 24.316 -6.723 0.110 25.229 Atomic orbital electron populations 1.69626 1.05639 1.27470 1.49433 1.25035 0.95485 0.97954 0.97675 0.86678 0.79734 0.84089 0.78924 1.19595 1.20195 1.19550 1.19425 0.79247 0.96609 1.48032 0.86286 1.42208 1.07529 1.06163 1.67171 1.19679 0.88112 0.84558 0.83956 1.90563 1.69411 1.30907 1.53607 1.21823 0.95193 0.90205 1.01175 1.59987 1.06205 1.13623 1.49381 1.20586 0.88609 0.97796 0.90990 0.90853 1.19814 0.93882 0.95423 0.96021 1.21166 0.98386 0.94023 0.96015 1.21163 0.96296 1.00267 0.95277 1.20998 0.96337 0.95636 1.00637 1.20799 0.92787 0.97611 0.95218 1.98356 1.44963 1.89050 1.72940 1.20863 0.97869 1.00229 0.93961 1.22269 0.95844 1.00379 0.93676 1.22522 0.98232 1.00825 0.94870 1.22468 0.94500 1.01639 0.97392 1.22370 0.97914 1.00378 0.95603 1.22189 0.94582 1.00710 0.98113 0.91627 0.79741 0.93613 0.89564 0.82501 0.84639 0.85280 0.85462 0.85505 0.90102 0.91418 0.91114 0.91527 0.91634 0.91890 0.91752 0.91790 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 9 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 10 C 0.45 10.00 7.83 -10.99 -0.09 9.92 16 11 O -0.56 -14.77 15.85 5.55 0.09 -14.68 16 12 C 0.05 0.77 5.82 -4.98 -0.03 0.74 16 13 N -0.66 -9.40 5.02 -109.21 -0.55 -9.95 16 14 C 0.13 1.44 1.68 -68.86 -0.12 1.33 16 15 H 0.07 0.79 7.40 -51.93 -0.38 0.40 16 16 C -0.05 -0.57 4.50 -104.63 -0.47 -1.04 16 17 C -0.08 -0.92 9.32 -39.58 -0.37 -1.29 16 18 C -0.11 -1.18 10.05 -39.59 -0.40 -1.58 16 19 C -0.12 -1.22 9.83 -39.55 -0.39 -1.61 16 20 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 21 Cl -0.08 -0.84 28.96 -51.86 -1.50 -2.34 16 22 C -0.11 -1.20 8.34 -39.55 -0.33 -1.53 16 23 C -0.10 -0.96 2.37 -89.50 -0.21 -1.17 16 24 C -0.13 -1.20 5.43 -25.04 -0.14 -1.34 16 25 C -0.12 -1.00 6.91 -24.70 -0.17 -1.17 16 26 C -0.13 -0.97 6.83 -25.07 -0.17 -1.14 16 27 C -0.12 -0.99 6.08 -25.61 -0.16 -1.14 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 30 H 0.05 0.63 7.25 -51.93 -0.38 0.25 16 31 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.35 5.16 7.19 -39.29 -0.28 4.87 16 33 H 0.14 1.67 7.71 -52.49 -0.40 1.27 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.22 7.68 -52.49 -0.40 0.82 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.69 6.96 -51.93 -0.36 0.33 16 39 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.57 6.00 -51.93 -0.31 0.26 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -31.45 377.09 -10.34 -41.79 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.54 Total: 13.19 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.53 Total: -9.37 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.17 Total: -48.89 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.45 -10.34 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.109 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds