Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47258 * 2 1 4 4 C 1.50693 * 109.47445 * 120.00721 * 2 1 3 5 5 H 1.07998 * 120.00143 * 119.99784 * 4 2 1 6 6 C 1.37879 * 119.99997 * 299.99793 * 4 2 1 7 7 N 1.31515 * 120.00100 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99802 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47016 * 90.00193 * 8 6 4 10 10 H 1.48499 * 109.46781 * 209.99632 * 8 6 4 11 11 H 1.48495 * 109.47416 * 329.99713 * 8 6 4 12 12 N 1.46504 * 109.47003 * 240.00647 * 2 1 3 13 13 S 1.65603 * 120.00061 * 94.99799 * 12 2 1 14 14 O 1.42101 * 104.27486 * 308.93304 * 13 12 2 15 15 O 1.42100 * 104.27755 * 181.07066 * 13 12 2 16 16 C 1.81400 * 104.44777 * 65.00181 * 13 12 2 17 17 C 1.50700 * 109.47008 * 180.02562 * 16 13 12 18 18 C 1.38250 * 119.99388 * 90.00216 * 17 16 13 19 19 C 1.38196 * 120.02428 * 180.23533 * 18 17 16 20 20 C 1.38379 * 120.01528 * 359.48406 * 19 18 17 21 21 Cl 1.73601 * 120.00731 * 180.27896 * 20 19 18 22 22 C 1.38313 * 119.98628 * 0.51109 * 20 19 18 23 23 C 1.38334 * 119.99592 * 269.97448 * 17 16 13 24 24 Cl 1.73607 * 120.00370 * 0.04881 * 23 17 16 25 25 H 1.09000 * 109.47274 * 59.99313 * 1 2 3 26 26 H 1.08994 * 109.47428 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46896 * 299.99304 * 1 2 3 28 28 H 0.97000 * 119.99789 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00086 * 275.00336 * 12 2 1 30 30 H 1.08989 * 109.47207 * 59.99936 * 16 13 12 31 31 H 1.09004 * 109.47215 * 299.99601 * 16 13 12 32 32 H 1.08002 * 119.98396 * 359.94940 * 18 17 16 33 33 H 1.08002 * 119.99082 * 179.74676 * 19 18 17 34 34 H 1.08001 * 120.01715 * 179.76414 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 2.1374 -0.8600 3.5564 8 14 0.6248 1.2787 2.6542 9 1 -0.8027 0.8723 2.7000 10 1 0.9760 1.9946 3.9070 11 1 0.8470 2.1763 1.4923 12 7 2.0183 -0.6905 -1.1963 13 16 2.4121 0.1774 -2.5506 14 8 1.2750 0.9969 -2.7845 15 8 2.8121 -0.8072 -3.4938 16 6 3.8312 1.1874 -2.0441 17 6 4.2863 2.0327 -3.2057 18 6 3.7511 3.2933 -3.3947 19 6 4.1644 4.0671 -4.4625 20 6 5.1221 3.5847 -5.3372 21 17 5.6464 4.5598 -6.6744 22 6 5.6580 2.3236 -5.1486 23 6 5.2399 1.5474 -4.0825 24 17 5.9115 -0.0359 -3.8454 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.9027 -0.5288 4.4374 29 1 2.1109 -1.6561 -1.1951 30 1 4.6457 0.5364 -1.7269 31 1 3.5399 1.8344 -1.2166 32 1 3.0063 3.6717 -2.7101 33 1 3.7430 5.0502 -4.6119 34 1 6.4027 1.9452 -5.8332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096499971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = -58.476172 kcal Electronic energy + Delta-G solvation = -22465.452397 eV Core-core repulsion = 18770.388619 eV Total energy + Delta-G solvation = -3695.063778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.009 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92118 -37.10384 -36.82245 -36.54636 -35.81711 -35.56187 -33.15888 -32.32014 -31.28242 -29.28443 -27.51089 -25.19938 -23.36775 -22.20567 -21.16416 -19.08424 -17.78934 -17.68641 -16.57919 -16.42592 -16.29575 -15.80325 -15.53368 -14.85116 -14.50984 -14.19464 -13.96788 -13.72305 -13.22923 -12.97914 -12.65196 -12.49230 -12.37274 -12.27028 -11.99594 -11.87859 -11.76001 -11.65042 -11.53288 -11.32386 -11.28780 -11.07947 -10.88244 -10.72175 -10.28217 -9.64640 -9.49361 -9.29559 -8.98842 -8.84737 -8.53154 -6.28067 -4.31369 0.24966 0.70561 0.86091 1.51375 1.97330 3.04453 3.15145 3.15612 3.24406 3.27178 3.90835 4.20575 4.21333 4.29784 4.45572 4.60840 4.81202 4.89848 5.03008 5.15083 5.34205 5.43868 5.62106 5.73202 5.83702 5.88612 6.14459 6.16878 6.45194 6.54191 6.88714 7.16223 7.31668 7.77676 8.29443 8.74358 9.30862 10.84143 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.003576 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.942352 B = 7828.272980 C = 8293.028351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.245 3.755 3 H 0.035 0.965 4 C -0.533 4.533 5 H 0.085 0.915 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.881 3.119 9 H -0.273 1.273 10 H -0.293 1.293 11 H -0.264 1.264 12 N -1.092 6.092 13 S 2.606 3.394 14 O -0.954 6.954 15 O -0.957 6.957 16 C -0.604 4.604 17 C -0.068 4.068 18 C -0.082 4.082 19 C -0.102 4.102 20 C -0.023 4.023 21 Cl -0.058 7.058 22 C -0.101 4.101 23 C -0.018 4.018 24 Cl -0.035 7.035 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.416 0.584 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 9.338 -15.752 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.139 3.861 3 H 0.053 0.947 4 C -0.572 4.572 5 H 0.103 0.897 6 C -0.128 4.128 7 N -0.526 5.526 8 Si 0.711 3.289 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.852 5.852 13 S 2.696 3.304 14 O -0.944 6.944 15 O -0.947 6.947 16 C -0.729 4.729 17 C -0.070 4.070 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.050 4.050 21 Cl -0.029 7.029 22 C -0.120 4.120 23 C -0.046 4.046 24 Cl -0.006 7.006 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.251 0.749 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.349 9.422 -16.452 19.993 hybrid contribution 0.120 0.522 0.866 1.018 sum 6.468 9.944 -15.586 19.587 Atomic orbital electron populations 1.22605 0.98776 1.01842 0.99863 1.18892 0.90872 0.92373 0.83945 0.94712 1.21126 1.33175 1.14691 0.88175 0.89734 1.24914 0.95442 0.96743 0.95661 1.69867 1.44682 1.39948 0.98089 0.86957 0.81110 0.83467 0.77363 1.19989 1.22056 1.18938 1.55398 1.80470 1.18909 1.30466 1.05078 0.76050 0.75211 0.74031 1.93582 1.45050 1.71441 1.84335 1.93579 1.84272 1.56828 1.60002 1.29932 1.23154 1.14474 1.05336 1.19061 0.97404 0.95553 0.95020 1.21201 0.99153 0.92093 0.97674 1.21176 0.96115 1.01173 0.93653 1.20811 0.98995 0.92826 0.92402 1.98388 1.89663 1.69954 1.44867 1.20894 1.01192 0.92396 0.97534 1.20758 0.97621 0.89182 0.97045 1.98424 1.83895 1.22150 1.96144 0.93321 0.92161 0.93423 0.92212 0.74944 0.83102 0.82978 0.82957 0.83591 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.00 37.15 0.33 -3.30 16 2 C 0.25 5.27 2.25 -69.09 -0.16 5.12 16 3 H 0.04 0.72 6.21 -51.93 -0.32 0.40 16 4 C -0.53 -13.50 9.34 -34.44 -0.32 -13.82 16 5 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -25.26 13.96 55.43 0.77 -24.48 16 8 Si 0.88 20.15 24.37 -169.99 -4.14 16.01 16 9 H -0.27 -6.15 6.87 56.52 0.39 -5.76 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -5.65 6.53 56.52 0.37 -5.28 16 12 N -1.09 -20.24 5.35 -5.88 -0.03 -20.27 16 13 S 2.61 44.30 5.36 -107.50 -0.58 43.73 16 14 O -0.95 -18.18 17.11 -57.54 -0.98 -19.16 16 15 O -0.96 -17.43 17.79 -57.54 -1.02 -18.46 16 16 C -0.60 -8.45 5.69 36.01 0.20 -8.25 16 17 C -0.07 -0.88 5.14 -104.58 -0.54 -1.42 16 18 C -0.08 -0.92 9.70 -39.59 -0.38 -1.30 16 19 C -0.10 -1.00 9.83 -39.54 -0.39 -1.39 16 20 C -0.02 -0.23 6.32 -39.50 -0.25 -0.48 16 21 Cl -0.06 -0.51 28.96 -51.86 -1.50 -2.01 16 22 C -0.10 -1.08 9.62 -39.51 -0.38 -1.46 16 23 C -0.02 -0.23 6.31 -39.50 -0.25 -0.48 16 24 Cl -0.04 -0.46 27.01 -51.86 -1.40 -1.86 16 25 H 0.05 0.96 7.42 -51.93 -0.39 0.57 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.42 7.25 8.79 -34.47 -0.30 6.94 16 30 H 0.15 1.99 6.90 -51.93 -0.36 1.64 16 31 H 0.15 1.91 7.39 -51.92 -0.38 1.53 16 32 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -30.44 327.72 -9.39 -39.83 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.22 Total: 6.60 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -2.22 Total: -24.85 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.74 Total: -44.76 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -2.01 Total: -37.62 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.14 Total: 16.01 kcal Atomic # 16 Polarization: 44.30 SS G_CDS: -0.58 Total: 43.73 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -2.90 Total: -3.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.44 -9.39 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096499971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.643 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds