Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36937 * 119.99709 * 2 1 4 4 H 1.07994 * 119.99865 * 202.37041 * 3 2 1 5 5 C 1.38816 * 120.00262 * 22.36769 * 3 2 1 6 6 N 1.31621 * 119.99901 * 11.11931 * 5 3 2 7 7 Si 1.86794 * 119.99998 * 191.11872 * 5 3 2 8 8 H 1.48492 * 109.47086 * 60.00204 * 7 5 3 9 9 H 1.48502 * 109.47052 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47154 * 300.00126 * 7 5 3 11 11 S 1.65594 * 120.00130 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40282 * 23.54030 * 11 2 1 13 13 O 1.42097 * 106.40082 * 156.45894 * 11 2 1 14 14 C 1.76196 * 107.21893 * 269.99930 * 11 2 1 15 15 C 1.38219 * 120.00724 * 114.72355 * 14 11 2 16 16 C 1.38304 * 120.01011 * 179.77039 * 15 14 11 17 17 Br 1.89103 * 119.97985 * 180.27492 * 16 15 14 18 18 C 1.38354 * 120.03691 * 0.50470 * 16 15 14 19 19 C 1.38167 * 120.00983 * 359.75221 * 18 16 15 20 20 C 1.38433 * 120.00744 * 294.99984 * 14 11 2 21 21 F 1.35099 * 120.01739 * 0.02562 * 20 14 11 22 22 H 1.08999 * 109.47222 * 274.21703 * 1 2 3 23 23 H 1.08995 * 109.47131 * 34.21512 * 1 2 3 24 24 H 1.08999 * 109.46937 * 154.21548 * 1 2 3 25 25 H 0.96990 * 120.00250 * 180.02562 * 6 5 3 26 26 H 1.07994 * 119.99264 * 0.02562 * 15 14 11 27 27 H 1.07997 * 119.99539 * 179.72027 * 18 16 15 28 28 H 1.08004 * 120.00350 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2212 -0.3560 5 6 1.5339 2.3429 0.4575 6 7 0.3823 2.2693 1.0905 7 14 2.3398 4.0042 0.1747 8 1 2.4992 4.2352 -1.2834 9 1 1.4878 5.0729 0.7555 10 1 3.6732 4.0251 0.8279 11 16 2.2931 -1.4341 -0.0006 12 8 1.4114 -2.4062 -0.5455 13 8 3.5759 -1.1564 -0.5450 14 6 2.5539 -1.8865 1.6821 15 6 1.9538 -3.0217 2.1937 16 6 2.1623 -3.3795 3.5133 17 35 1.3470 -4.9370 4.2102 18 6 2.9631 -2.5960 4.3251 19 6 3.5593 -1.4581 3.8164 20 6 3.3553 -1.1020 2.4937 21 9 3.9373 0.0110 1.9960 22 1 -0.3633 0.0756 1.0249 23 1 -0.3633 0.8498 -0.5778 24 1 -0.3633 -0.9253 -0.4470 25 1 -0.0482 3.0776 1.4098 26 1 1.3253 -3.6315 1.5618 27 1 3.1218 -2.8735 5.3566 28 1 4.1841 -0.8463 4.4503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096502820.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -76.031930 kcal Electronic energy + Delta-G solvation = -19750.125512 eV Core-core repulsion = 16275.703304 eV Total energy + Delta-G solvation = -3474.422209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 336.957 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.50936 -38.65374 -35.84207 -35.78955 -34.45329 -31.95905 -31.63233 -31.11938 -28.68929 -26.57512 -23.68295 -23.15249 -22.19637 -18.60885 -17.87478 -17.11662 -16.70903 -16.23903 -15.98085 -15.18298 -14.67519 -14.59610 -14.31490 -13.93799 -13.32663 -13.10373 -12.84680 -12.77335 -12.10916 -11.93795 -11.48587 -11.36900 -11.13286 -11.05592 -10.76738 -10.73014 -10.60803 -10.36816 -10.30543 -10.21557 -9.88172 -9.38558 -9.17557 -8.39296 -8.22857 -6.71318 -4.13960 0.96968 1.22498 1.59713 1.70708 3.07983 3.08486 3.13659 3.46645 3.88682 4.33558 4.46578 4.65637 4.76069 4.95382 5.10431 5.38735 5.54298 5.75406 5.98001 6.09741 6.17552 6.24267 6.36456 6.77266 6.90559 7.00691 7.11976 7.32452 8.15260 8.48196 8.97022 10.23025 Molecular weight = 336.96amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.004645 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.571851 B = 6026.387147 C = 6311.206154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.793 5.793 3 C -0.222 4.222 4 H 0.120 0.880 5 C 0.031 3.969 6 N -0.825 5.825 7 Si 0.931 3.069 8 H -0.265 1.265 9 H -0.279 1.279 10 H -0.264 1.264 11 S 2.501 3.499 12 O -0.999 6.999 13 O -0.977 6.977 14 C -0.688 4.688 15 C 0.019 3.981 16 C -0.132 4.132 17 Br -0.056 7.056 18 C -0.037 4.037 19 C -0.177 4.177 20 C 0.214 3.786 21 F -0.107 7.107 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.279 0.721 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -6.242 8.086 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.616 5.616 3 C -0.374 4.374 4 H 0.138 0.862 5 C -0.183 4.183 6 N -0.465 5.465 7 Si 0.755 3.245 8 H -0.190 1.190 9 H -0.204 1.204 10 H -0.189 1.189 11 S 2.597 3.403 12 O -0.988 6.988 13 O -0.966 6.966 14 C -0.764 4.764 15 C -0.002 4.002 16 C -0.212 4.212 17 Br 0.029 6.971 18 C -0.057 4.057 19 C -0.198 4.198 20 C 0.193 3.807 21 F -0.085 7.085 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.168 0.832 27 H 0.156 0.844 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.341 -7.541 7.780 10.840 hybrid contribution 0.563 1.297 0.854 1.652 sum 0.905 -6.244 8.634 10.694 Atomic orbital electron populations 1.21390 0.78867 1.00309 1.02101 1.54438 1.13375 1.18838 1.74962 1.20192 1.01243 0.82813 1.33120 0.86206 1.25863 0.96404 1.01424 0.94606 1.70097 1.14918 1.30826 1.30659 0.85887 0.79457 0.79475 0.79635 1.18994 1.20418 1.18909 1.13582 0.74235 0.74917 0.77585 1.93312 1.65107 1.61955 1.78446 1.93365 1.41378 1.84320 1.77551 1.32806 1.06904 1.03142 1.33514 1.20771 0.93521 0.93127 0.92774 1.21854 1.05588 0.96871 0.96905 1.96640 1.80811 1.33751 1.85918 1.20957 0.93143 0.92404 0.99203 1.21181 1.04590 0.99378 0.94606 1.17184 0.89793 0.82406 0.91365 1.91662 1.81017 1.48275 1.87523 0.92792 0.90437 0.93421 0.91085 0.83239 0.84354 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.62 8.92 59.85 0.53 3.15 15 2 N -0.79 -18.93 3.31 -66.69 -0.22 -19.15 15 3 C -0.22 -5.40 8.24 -15.06 -0.12 -5.53 15 4 H 0.12 2.94 7.16 -52.49 -0.38 2.56 15 5 C 0.03 0.71 5.13 -17.43 -0.09 0.62 15 6 N -0.83 -19.19 10.57 55.49 0.59 -18.60 15 7 Si 0.93 18.04 29.57 -169.99 -5.03 13.01 15 8 H -0.27 -5.09 7.11 56.52 0.40 -4.68 15 9 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 10 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 11 S 2.50 59.51 5.30 -107.50 -0.57 58.94 15 12 O -1.00 -24.50 15.53 -57.17 -0.89 -25.39 15 13 O -0.98 -25.53 16.22 -57.17 -0.93 -26.45 15 14 C -0.69 -14.57 5.91 -39.52 -0.23 -14.81 15 15 C 0.02 0.35 9.29 -39.56 -0.37 -0.01 15 16 C -0.13 -2.14 6.22 -39.51 -0.25 -2.39 15 17 Br -0.06 -0.76 33.70 -68.01 -2.29 -3.05 15 18 C -0.04 -0.54 9.79 -39.56 -0.39 -0.93 15 19 C -0.18 -2.86 10.03 -39.52 -0.40 -3.26 15 20 C 0.21 4.31 7.21 -39.42 -0.28 4.03 15 21 F -0.11 -2.32 15.07 2.25 0.03 -2.29 15 22 H 0.05 1.19 7.42 -51.93 -0.39 0.81 15 23 H 0.08 1.69 7.18 -51.93 -0.37 1.32 15 24 H 0.05 0.98 6.93 -51.93 -0.36 0.62 15 25 H 0.28 6.06 8.31 -40.82 -0.34 5.72 15 26 H 0.15 2.74 7.33 -52.49 -0.38 2.35 15 27 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.14 1.86 8.06 -52.48 -0.42 1.43 15 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -27.72 281.78 -8.51 -36.23 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -1.86 Total: 1.64 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.59 Total: -19.12 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.37 Total: -37.76 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -1.82 Total: -51.84 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 59.51 SS G_CDS: -0.57 Total: 58.94 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.05 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.72 -8.51 -36.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502820.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.805 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds