Wall clock time and date at job start Tue Mar 31 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48496 * 109.47362 * 275.00044 * 3 2 1 5 5 H 1.48501 * 109.46937 * 34.99889 * 3 2 1 6 6 H 1.48497 * 109.47319 * 154.99327 * 3 2 1 7 7 C 1.39914 * 120.00607 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00046 * 144.33606 * 7 2 1 9 9 C 1.41124 * 119.99829 * 324.34516 * 7 2 1 10 10 C 1.40888 * 120.16256 * 173.36437 * 9 7 2 11 11 C 1.36343 * 119.83173 * 180.02562 * 10 9 7 12 12 C 1.39525 * 120.16846 * 359.97438 * 11 10 9 13 13 N 1.39059 * 119.83920 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00155 * 143.08265 * 13 12 11 15 15 O 1.21738 * 119.99886 * 5.46456 * 14 13 12 16 16 C 1.46179 * 120.00383 * 185.19081 * 14 13 12 17 17 C 1.35036 * 120.00416 * 173.20305 * 16 14 13 18 18 C 1.46990 * 119.99625 * 347.23551 * 17 16 14 19 19 C 1.39962 * 120.10929 * 315.14392 * 18 17 16 20 20 C 1.37718 * 119.97031 * 179.72681 * 19 18 17 21 21 C 1.38895 * 120.25503 * 0.52968 * 20 19 18 22 22 C 1.39598 * 120.09456 * 359.75263 * 21 20 19 23 23 C 1.38079 * 120.00811 * 359.97438 * 22 21 20 24 24 O 1.36536 * 108.58294 * 179.97438 * 22 21 20 25 25 C 1.43976 * 105.45980 * 342.69173 * 24 22 21 26 26 O 1.36391 * 131.32908 * 179.74698 * 21 20 19 27 27 C 1.39533 * 120.32432 * 0.27626 * 12 11 10 28 28 C 1.36349 * 120.16286 * 359.44558 * 27 12 11 29 29 H 0.96996 * 120.00255 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.07837 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.91340 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00225 * 323.08467 * 13 12 11 33 33 H 1.07998 * 120.00014 * 353.20639 * 16 14 13 34 34 H 1.07996 * 120.00276 * 167.24082 * 17 16 14 35 35 H 1.07993 * 120.01521 * 359.97438 * 19 18 17 36 36 H 1.08005 * 119.87298 * 180.29946 * 20 19 18 37 37 H 1.07998 * 120.05281 * 180.02562 * 23 22 21 38 38 H 1.09000 * 110.56067 * 268.63305 * 25 24 22 39 39 H 1.09002 * 110.56450 * 145.78386 * 25 24 22 40 40 H 1.07999 * 119.92020 * 179.69800 * 27 12 11 41 41 H 1.07997 * 120.08473 * 180.27638 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3845 2.1075 -1.3947 5 1 1.4969 2.6199 0.8030 6 1 3.5890 1.4121 0.5918 7 6 2.0084 -1.2116 0.0005 8 1 2.9364 -1.2995 -0.5447 9 6 1.5012 -2.3189 0.7135 10 6 2.1255 -3.5772 0.6044 11 6 1.6296 -4.6426 1.2957 12 6 0.5071 -4.4890 2.1101 13 7 0.0067 -5.5803 2.8118 14 6 -0.4935 -5.4124 4.0520 15 8 -0.5992 -4.2932 4.5192 16 6 -0.9146 -6.5735 4.8338 17 6 -1.2862 -6.4208 6.1230 18 6 -1.0066 -5.1593 6.8239 19 6 0.2485 -4.5520 6.7028 20 6 0.5055 -3.3673 7.3561 21 6 -0.4732 -2.7766 8.1450 22 6 -1.7255 -3.3795 8.2753 23 6 -1.9930 -4.5646 7.6190 24 8 -2.4968 -2.6077 9.0960 25 6 -1.5754 -1.7471 9.7911 26 8 -0.4642 -1.6299 8.8834 27 6 -0.1196 -3.2471 2.2190 28 6 0.3684 -2.1714 1.5381 29 1 -0.4850 0.8400 -0.0004 30 1 2.9942 -3.6977 -0.0260 31 1 2.1068 -5.6079 1.2128 32 1 0.0177 -6.4625 2.4087 33 1 -0.9286 -7.5536 4.3803 34 1 -1.7886 -7.2254 6.6391 35 1 1.0139 -5.0103 6.0940 36 1 1.4730 -2.8975 7.2577 37 1 -2.9617 -5.0315 7.7189 38 1 -1.2576 -2.2041 10.7283 39 1 -2.0257 -0.7714 9.9732 40 1 -0.9909 -3.1367 2.8475 41 1 -0.1150 -1.2097 1.6268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096879217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:12 Heat of formation + Delta-G solvation = -14.057602 kcal Electronic energy + Delta-G solvation = -27698.731440 eV Core-core repulsion = 23703.539718 eV Total energy + Delta-G solvation = -3995.191722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05662 -39.79763 -38.02637 -36.97330 -36.24115 -34.51661 -33.31629 -33.01100 -30.50234 -29.58992 -29.33459 -28.67653 -25.92244 -25.25758 -23.68792 -22.78372 -22.02434 -21.23679 -20.34109 -19.22804 -17.90001 -17.67355 -17.39654 -17.22598 -16.80403 -16.25806 -15.79157 -15.20675 -14.74921 -14.44599 -14.17783 -14.03569 -13.80464 -13.75115 -13.72872 -13.03969 -12.96592 -12.92668 -12.66175 -12.60794 -12.09710 -11.96436 -11.91246 -11.25896 -11.15403 -11.08266 -11.05202 -10.92966 -10.60932 -10.06402 -9.74429 -9.52631 -9.30007 -8.88656 -8.79139 -8.62692 -7.60641 -7.46549 -7.18993 -6.88132 -4.24905 0.71014 1.42477 1.76596 2.71261 2.83197 3.02866 3.06545 3.14216 3.22623 3.46359 3.72786 3.79086 3.85985 3.92176 4.48782 4.57540 4.59058 4.70103 4.86554 5.02458 5.21614 5.26891 5.28136 5.40194 5.62106 5.73617 5.94793 6.05287 6.17205 6.18939 6.22685 6.41153 6.46390 6.49093 6.62215 6.87555 6.96267 7.11584 7.18406 7.20952 7.34415 7.61753 7.74513 8.04259 8.07826 8.22954 8.37146 8.61916 8.84531 8.86350 9.06479 9.94488 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.010772 B = 0.003343 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.697201 B = 8373.614411 C =10352.559055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.898 3.102 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.105 3.895 10 C -0.232 4.232 11 C -0.092 4.092 12 C -0.030 4.030 13 N -0.640 5.640 14 C 0.515 3.485 15 O -0.519 6.519 16 C -0.194 4.194 17 C -0.037 4.037 18 C -0.053 4.053 19 C -0.027 4.027 20 C -0.104 4.104 21 C 0.039 3.961 22 C 0.014 3.986 23 C -0.083 4.083 24 O -0.313 6.313 25 C 0.214 3.786 26 O -0.310 6.310 27 C -0.071 4.071 28 C -0.190 4.190 29 H 0.285 0.715 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.392 0.608 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 -9.735 14.849 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.252 4.252 11 C -0.112 4.112 12 C -0.123 4.123 13 N -0.282 5.282 14 C 0.304 3.696 15 O -0.398 6.398 16 C -0.215 4.215 17 C -0.056 4.056 18 C -0.054 4.054 19 C -0.045 4.045 20 C -0.123 4.123 21 C -0.005 4.005 22 C -0.030 4.030 23 C -0.101 4.101 24 O -0.230 6.230 25 C 0.102 3.898 26 O -0.226 6.226 27 C -0.090 4.090 28 C -0.210 4.210 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.225 0.775 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.097 0.903 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.290 -8.593 15.191 17.760 hybrid contribution 0.204 0.461 -0.226 0.552 sum -3.087 -8.132 14.965 17.309 Atomic orbital electron populations 1.69957 1.08313 1.30046 1.29450 1.26046 0.94305 1.01961 0.91400 0.86463 0.81604 0.80580 0.79217 1.19364 1.19747 1.17978 1.19571 1.06977 0.94604 1.27096 0.90036 1.17609 0.90787 0.91268 0.90143 1.20352 1.04216 0.93162 1.07443 1.20011 0.94691 0.97427 0.99077 1.17039 1.00340 0.88108 1.06775 1.42873 1.59851 1.10419 1.15068 1.18379 0.79759 0.89644 0.81808 1.90902 1.53711 1.25236 1.69930 1.23149 1.04286 0.98597 0.95506 1.22134 0.94558 0.95179 0.93754 1.18475 0.93663 0.95849 0.97374 1.20854 0.96232 0.93461 0.93980 1.19891 0.98150 0.95686 0.98535 1.19930 0.95294 0.86447 0.98805 1.19488 0.89182 0.94917 0.99374 1.19940 0.99948 0.92272 0.97980 1.87331 1.31249 1.49383 1.54995 1.25535 0.77567 0.95900 0.90807 1.87324 1.49895 1.36037 1.49369 1.20485 0.98454 0.92163 0.97940 1.21102 1.00447 0.98391 1.01016 0.90427 0.88919 0.89456 0.77492 0.85065 0.84629 0.85192 0.84932 0.85092 0.90305 0.85549 0.87884 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.36 11.04 55.55 0.61 -18.74 16 2 C 0.09 2.15 4.92 -17.34 -0.09 2.06 16 3 Si 0.90 18.42 29.67 -169.99 -5.04 13.37 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.06 8.95 -37.86 -0.34 -12.40 16 8 H 0.08 2.06 8.04 -52.49 -0.42 1.64 16 9 C 0.10 2.82 5.70 -106.80 -0.61 2.21 16 10 C -0.23 -5.65 9.74 -39.26 -0.38 -6.03 16 11 C -0.09 -2.02 9.90 -39.78 -0.39 -2.42 16 12 C -0.03 -0.67 6.27 -83.62 -0.52 -1.20 16 13 N -0.64 -11.10 5.29 -11.07 -0.06 -11.15 16 14 C 0.52 8.72 6.64 -13.07 -0.09 8.63 16 15 O -0.52 -10.75 9.96 5.15 0.05 -10.70 16 16 C -0.19 -2.28 9.89 -37.53 -0.37 -2.65 16 17 C -0.04 -0.40 9.79 -37.18 -0.36 -0.76 16 18 C -0.05 -0.73 4.43 -105.06 -0.47 -1.20 16 19 C -0.03 -0.41 6.73 -39.13 -0.26 -0.67 16 20 C -0.10 -1.62 10.04 -39.53 -0.40 -2.02 16 21 C 0.04 0.63 7.16 -38.83 -0.28 0.35 16 22 C 0.01 0.21 7.13 -39.13 -0.28 -0.06 16 23 C -0.08 -1.14 9.80 -39.00 -0.38 -1.52 16 24 O -0.31 -4.38 11.41 -45.80 -0.52 -4.91 16 25 C 0.21 2.32 8.88 101.05 0.90 3.22 16 26 O -0.31 -4.60 11.39 -45.33 -0.52 -5.11 16 27 C -0.07 -1.78 8.60 -39.78 -0.34 -2.12 16 28 C -0.19 -5.15 8.87 -39.26 -0.35 -5.50 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 30 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.39 5.27 8.80 -40.82 -0.36 4.91 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.93 7.23 -52.49 -0.38 1.56 16 36 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 2.65 6.33 -52.49 -0.33 2.32 16 41 H 0.12 3.43 5.64 -52.49 -0.30 3.13 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.27 352.51 -9.48 -41.76 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.31 Total: 12.26 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -5.01 Total: -22.08 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.55 Total: -29.90 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.99 Total: -20.72 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.04 Total: 13.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.27 -9.48 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096879217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.700 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds