Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 119.99977 * 2 1 4 4 N 1.34780 * 119.99868 * 179.97438 * 2 1 3 5 5 C 1.47617 * 118.74380 * 185.44150 * 4 2 1 6 6 C 1.53764 * 111.31818 * 138.33210 * 5 4 2 7 7 C 1.51277 * 109.61773 * 319.93554 * 6 5 4 8 8 N 1.46194 * 109.09836 * 92.41849 * 7 6 5 9 9 C 1.46902 * 110.99945 * 144.76183 * 8 7 6 10 10 C 1.50696 * 109.46930 * 64.90036 * 9 8 7 11 11 O 1.21277 * 120.00408 * 354.91222 * 10 9 8 12 12 N 1.34779 * 119.99883 * 174.91932 * 10 9 8 13 13 C 1.46497 * 120.00030 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47456 * 89.99621 * 13 12 10 15 15 H 1.08007 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00169 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99534 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99893 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47341 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47077 * 119.99853 * 18 16 14 21 21 H 1.48505 * 109.47290 * 239.99506 * 18 16 14 22 22 C 1.46497 * 119.99997 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.47249 * 90.00385 * 22 12 10 24 24 C 1.47202 * 109.47087 * 180.02562 * 23 22 12 25 25 N 9.65578 * 109.55878 * 130.85069 * 4 1 2 26 26 C 1.41441 * 116.34677 * 272.96918 * 8 7 6 27 27 C 1.44886 * 118.74577 * 5.42397 * 4 2 1 28 28 H 1.08993 * 109.47848 * 274.71160 * 1 2 3 29 29 H 1.09005 * 109.47056 * 34.71973 * 1 2 3 30 30 H 1.09002 * 109.46926 * 154.71477 * 1 2 3 31 31 H 1.09004 * 109.11091 * 258.78549 * 5 4 2 32 32 H 1.08995 * 109.11597 * 17.91218 * 5 4 2 33 33 H 1.08996 * 109.44601 * 199.89377 * 6 5 4 34 34 H 1.09000 * 109.46259 * 79.98398 * 6 5 4 35 35 H 1.09001 * 109.53321 * 332.53062 * 7 6 5 36 36 H 1.08998 * 109.53040 * 212.30640 * 7 6 5 37 37 H 1.09002 * 109.47015 * 184.90169 * 9 8 7 38 38 H 1.09004 * 109.46902 * 304.89574 * 9 8 7 39 39 H 1.09002 * 109.46757 * 209.99603 * 13 12 10 40 40 H 1.08997 * 109.47358 * 329.99042 * 13 12 10 41 41 H 0.97001 * 119.99458 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47696 * 210.00787 * 22 12 10 43 43 H 1.09010 * 109.47362 * 330.00323 * 22 12 10 44 44 H 1.09000 * 109.47097 * 299.99979 * 23 22 12 45 45 H 1.08993 * 109.46819 * 59.99858 * 23 22 12 46 46 H 1.09001 * 109.38584 * 183.64396 * 26 8 7 47 47 H 1.08997 * 109.38627 * 303.42875 * 26 8 7 48 48 H 1.09001 * 109.43131 * 149.65392 * 27 4 2 49 49 H 1.08990 * 109.43804 * 29.78351 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6516 -1.1378 0.1232 6 6 4.1558 -2.2400 1.0694 7 6 3.2248 -2.3557 2.2561 8 7 2.2085 -3.3669 1.9699 9 6 1.8495 -4.1110 3.1846 10 6 1.1941 -3.1780 4.1699 11 8 1.1240 -1.9918 3.9275 12 7 0.6860 -3.6618 5.3207 13 6 0.0484 -2.7548 6.2783 14 6 -1.4224 -2.6491 5.9675 15 1 -1.8404 -3.2019 5.1391 16 6 -2.2343 -1.8459 6.7399 17 7 -1.7252 -1.1724 7.7483 18 14 -4.0573 -1.7143 6.3541 19 1 -4.3771 -2.5639 5.1789 20 1 -4.8456 -2.1728 7.5261 21 1 -4.3983 -0.3013 6.0504 22 6 0.7703 -5.0947 5.6134 23 6 2.0713 -5.3862 6.3641 24 6 2.1563 -6.8262 6.6576 25 7 2.2225 -7.9366 6.8859 26 6 1.0522 -2.9197 1.2891 27 6 1.4340 -2.4030 -0.1190 28 1 -0.3634 0.0844 1.0241 29 1 -0.3633 0.8447 -0.5853 30 1 -0.3633 -0.9292 -0.4390 31 1 4.0949 -1.2833 -0.8619 32 1 3.9579 -0.1669 0.5125 33 1 5.1578 -1.9891 1.4175 34 1 4.1847 -3.1906 0.5369 35 1 2.7424 -1.3949 2.4360 36 1 3.7935 -2.6500 3.1381 37 1 1.1575 -4.9132 2.9281 38 1 2.7493 -4.5359 3.6296 39 1 0.1793 -3.1427 7.2886 40 1 0.5069 -1.7687 6.2056 41 1 -2.2965 -0.6076 8.2919 42 1 -0.0787 -5.3904 6.2297 43 1 0.7554 -5.6578 4.6801 44 1 2.9204 -5.0907 5.7478 45 1 2.0863 -4.8232 7.2972 46 1 0.3471 -3.7453 1.1927 47 1 0.5884 -2.1122 1.8556 48 1 2.0463 -3.1492 -0.6254 49 1 0.5280 -2.2247 -0.6979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096993707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -22.349581 kcal Electronic energy + Delta-G solvation = -30656.876787 eV Core-core repulsion = 26619.861086 eV Total energy + Delta-G solvation = -4037.015701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60472 -39.52421 -37.72876 -36.83850 -35.43029 -34.77283 -33.27327 -32.93453 -30.90770 -29.66306 -29.56631 -27.54109 -26.23814 -25.31345 -24.06777 -22.83804 -22.09334 -20.66321 -19.02916 -18.58311 -17.68443 -17.20838 -16.87174 -16.53628 -16.21726 -15.81979 -15.60705 -15.52482 -14.82101 -14.75094 -14.54153 -14.19526 -14.03167 -13.75277 -13.70771 -13.29125 -13.10086 -12.60211 -12.58178 -12.48927 -12.46865 -12.22516 -12.02987 -11.95552 -11.87255 -11.70561 -11.47045 -11.34272 -11.28266 -11.02262 -10.91311 -10.84272 -10.72210 -10.64158 -10.26443 -9.76150 -9.71294 -9.61958 -8.66054 -8.53946 -7.92557 -7.90330 -6.15119 -4.20082 2.68137 2.68672 2.77289 3.04288 3.17428 3.22743 3.31481 3.33498 3.58247 3.89884 4.15098 4.35714 4.60893 4.84000 4.87630 4.88961 4.95096 5.03645 5.07450 5.12510 5.18572 5.20958 5.23458 5.30092 5.39669 5.46233 5.50638 5.58064 5.59723 5.69069 5.76546 5.80489 5.87577 5.93931 5.98114 6.01066 6.19442 6.34430 6.55322 6.81654 7.05022 7.28940 7.33484 7.35805 7.43176 7.53237 7.80375 8.10550 8.17975 8.21871 8.75273 8.89734 9.45805 10.93056 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.004393 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.657794 B = 6372.809780 C = 8950.375542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.553 6.553 4 N -0.607 5.607 5 C 0.114 3.886 6 C -0.130 4.130 7 C 0.071 3.929 8 N -0.536 5.536 9 C 0.037 3.963 10 C 0.473 3.527 11 O -0.531 6.531 12 N -0.595 5.595 13 C 0.244 3.756 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.117 3.883 23 C -0.049 4.049 24 C 0.217 3.783 25 N -0.444 5.444 26 C 0.038 3.962 27 C 0.111 3.889 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.263 0.737 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -6.610 -13.418 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.302 3.698 3 O -0.431 6.431 4 N -0.340 5.340 5 C -0.008 4.008 6 C -0.169 4.169 7 C -0.057 4.057 8 N -0.258 5.258 9 C -0.094 4.094 10 C 0.259 3.741 11 O -0.408 6.408 12 N -0.327 5.327 13 C 0.125 3.875 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.009 4.009 23 C -0.091 4.091 24 C -0.101 4.101 25 N -0.122 5.122 26 C -0.092 4.092 27 C -0.013 4.013 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.346 -7.213 -13.379 17.843 hybrid contribution -1.554 0.870 0.562 1.868 sum 7.792 -6.343 -12.817 16.286 Atomic orbital electron populations 1.22058 0.91891 1.04343 1.05598 1.20873 0.90750 0.83258 0.74911 1.90678 1.70796 1.31389 1.50228 1.47829 1.07093 1.06347 1.72756 1.21795 0.79078 1.00737 0.99195 1.21887 0.98865 0.99142 0.96975 1.21510 0.92365 0.95451 0.96333 1.58848 1.14176 1.30872 1.21917 1.22406 1.01116 0.96423 0.89463 1.21671 0.79624 0.89818 0.82995 1.90678 1.57955 1.16759 1.75391 1.48349 1.56748 1.07156 1.20458 1.19330 0.92446 0.89333 0.86391 1.21406 0.92945 1.27743 1.14531 0.92453 1.24919 0.98918 0.95181 0.94950 1.69926 1.35830 1.29075 1.18287 0.86480 0.84937 0.78019 0.78204 1.19815 1.20943 1.20880 1.21311 0.95903 0.83506 1.00210 1.19880 1.01725 0.82958 1.04534 1.29067 0.93062 0.94992 0.93014 1.81196 1.08776 1.12930 1.09259 1.21933 0.91889 1.00846 0.94526 1.21787 0.96640 0.85947 0.96904 0.88095 0.89343 0.89971 0.92279 0.89689 0.90560 0.90463 0.91786 0.91626 0.88404 0.88393 0.94913 0.93746 0.92685 0.88816 0.90558 0.87636 0.86585 0.90301 0.92017 0.89830 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.72 36.00 0.35 -1.72 16 2 C 0.51 7.41 7.73 -10.98 -0.08 7.32 16 3 O -0.55 -10.14 16.44 5.56 0.09 -10.05 16 4 N -0.61 -7.31 2.19 -172.47 -0.38 -7.69 16 5 C 0.11 1.27 6.11 -3.03 -0.02 1.25 16 6 C -0.13 -1.26 5.78 -27.20 -0.16 -1.42 16 7 C 0.07 0.88 4.14 -5.08 -0.02 0.85 16 8 N -0.54 -6.16 3.99 -240.94 -0.96 -7.12 16 9 C 0.04 0.42 4.28 -4.98 -0.02 0.40 16 10 C 0.47 7.77 7.12 -10.99 -0.08 7.70 16 11 O -0.53 -11.10 12.19 5.56 0.07 -11.03 16 12 N -0.60 -10.00 2.46 -175.06 -0.43 -10.43 16 13 C 0.24 5.55 5.16 -5.20 -0.03 5.52 16 14 C -0.53 -13.57 9.39 -34.44 -0.32 -13.90 16 15 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.12 1.41 5.19 -4.04 -0.02 1.39 16 23 C -0.05 -0.47 6.03 -29.52 -0.18 -0.64 16 24 C 0.22 2.43 15.43 -20.77 -0.32 2.11 16 25 N -0.44 -6.22 18.53 42.14 0.78 -5.43 16 26 C 0.04 0.45 4.92 -5.74 -0.03 0.42 16 27 C 0.11 1.07 5.24 -3.97 -0.02 1.05 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.72 5.54 -51.93 -0.29 0.43 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.12 7.06 -51.93 -0.37 0.76 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.69 7.98 -51.93 -0.41 0.28 16 35 H 0.06 1.05 6.23 -51.93 -0.32 0.73 16 36 H 0.07 0.79 7.57 -51.93 -0.39 0.39 16 37 H 0.10 0.95 6.91 -51.93 -0.36 0.59 16 38 H 0.10 0.88 7.17 -51.93 -0.37 0.51 16 39 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 43 H 0.08 0.73 6.30 -51.92 -0.33 0.40 16 44 H 0.11 0.78 7.37 -51.93 -0.38 0.39 16 45 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 47 H 0.06 0.97 6.06 -51.93 -0.31 0.66 16 48 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 49 H 0.09 0.67 5.71 -51.93 -0.30 0.37 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -34.47 391.88 -7.80 -42.28 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.55 Total: 0.30 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.05 Total: 11.91 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.25 Total: -55.04 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.47 -7.80 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096993707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.925 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds