Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46756 * 2 1 4 4 N 1.46499 * 109.47215 * 239.99920 * 2 1 3 5 5 C 1.34777 * 120.00065 * 84.99926 * 4 2 1 6 6 O 1.21593 * 119.99923 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.40194 * 119.99945 * 180.27819 * 7 5 4 9 9 C 1.40400 * 125.97290 * 359.43673 * 8 7 5 10 10 C 1.35239 * 107.86845 * 179.86648 * 9 8 7 11 11 N 1.34968 * 107.85956 * 0.39102 * 10 9 8 12 12 C 1.46493 * 125.97621 * 179.71462 * 11 10 9 13 13 C 1.53002 * 109.46960 * 125.02157 * 12 11 10 14 14 C 1.50706 * 109.47129 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99658 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99527 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00151 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47111 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46867 * 120.00081 * 18 16 14 21 21 H 1.48499 * 109.47361 * 239.99904 * 18 16 14 22 22 N 1.31208 * 125.97117 * 179.74638 * 8 7 5 23 23 C 1.52997 * 109.46664 * 119.99993 * 2 1 3 24 24 C 1.53173 * 109.54727 * 59.82623 * 23 2 1 25 25 C 1.53104 * 109.16013 * 183.23711 * 24 23 2 26 26 O 1.42903 * 109.48404 * 57.47387 * 25 24 23 27 27 C 1.42899 * 114.09785 * 298.88835 * 26 25 24 28 28 C 1.53089 * 109.41662 * 61.16086 * 27 26 25 29 29 H 1.08996 * 109.46971 * 300.00207 * 1 2 3 30 30 H 1.09001 * 109.46861 * 60.00121 * 1 2 3 31 31 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00386 * 265.00295 * 4 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 34 34 H 1.08006 * 126.06402 * 0.02562 * 9 8 7 35 35 H 1.08007 * 126.07492 * 180.11339 * 10 9 8 36 36 H 1.09001 * 109.47207 * 245.01894 * 12 11 10 37 37 H 1.09001 * 109.47468 * 5.02133 * 12 11 10 38 38 H 1.08998 * 109.47147 * 299.99405 * 13 12 11 39 39 H 1.08997 * 109.47283 * 60.00153 * 13 12 11 40 40 H 0.97006 * 119.99444 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.54137 * 180.02562 * 23 2 1 42 42 H 1.09006 * 109.52413 * 303.05467 * 24 23 2 43 43 H 1.09004 * 109.52519 * 63.24041 * 24 23 2 44 44 H 1.08993 * 109.40394 * 297.49163 * 25 24 23 45 45 H 1.08997 * 109.48543 * 177.49856 * 25 24 23 46 46 H 1.09002 * 109.48165 * 301.17917 * 27 26 25 47 47 H 1.09000 * 109.48431 * 181.14151 * 27 26 25 48 48 H 1.08998 * 109.52442 * 182.49031 * 28 27 26 49 49 H 1.08999 * 109.52278 * 62.29727 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8584 1.1616 -2.4116 7 7 2.5959 -0.6538 -3.4577 8 6 2.7354 0.0470 -4.6639 9 6 2.4352 1.4031 -4.8693 10 6 2.7072 1.6973 -6.1609 11 7 3.1540 0.5716 -6.7566 12 6 3.5574 0.4420 -8.1589 13 6 4.9795 -0.1179 -8.2309 14 6 5.3943 -0.2518 -9.6735 15 1 4.7117 0.0334 -10.4603 16 6 6.6448 -0.7396 -9.9889 17 7 7.4753 -1.0883 -9.0307 18 14 7.1586 -0.9063 -11.7770 19 1 6.0511 -0.4501 -12.6549 20 1 8.3623 -0.0728 -12.0259 21 1 7.4712 -2.3277 -12.0718 22 7 3.1637 -0.4512 -5.7996 23 6 2.0400 -0.7213 1.2493 24 6 1.5267 -2.1644 1.2532 25 6 1.9742 -2.8534 2.5451 26 8 1.4893 -2.1177 3.6702 27 6 1.9759 -0.7761 3.7437 28 6 1.5266 -0.0031 2.5011 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.8266 -1.5949 -3.4141 34 1 2.0570 2.0901 -4.1267 35 1 2.5841 2.6608 -6.6333 36 1 2.8742 -0.2344 -8.6725 37 1 3.5277 1.4209 -8.6376 38 1 5.6627 0.5586 -7.7174 39 1 5.0092 -1.0967 -7.7523 40 1 8.3553 -1.4311 -9.2526 41 1 3.1300 -0.7216 1.2507 42 1 0.4379 -2.1640 1.2003 43 1 1.9337 -2.6982 0.3943 44 1 3.0630 -2.8909 2.5771 45 1 1.5743 -3.8670 2.5740 46 1 3.0648 -0.7864 3.7914 47 1 1.5773 -0.2932 4.6359 48 1 1.9337 1.0075 2.5338 49 1 0.4379 0.0425 2.4742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097016033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -3.595832 kcal Electronic energy + Delta-G solvation = -28456.933696 eV Core-core repulsion = 24420.731218 eV Total energy + Delta-G solvation = -4036.202477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05523 -40.39823 -39.45746 -36.80532 -34.94185 -33.89085 -33.25851 -31.85330 -31.58841 -30.06737 -29.51015 -28.35961 -25.98502 -24.78860 -24.15304 -23.11578 -21.75434 -21.48772 -20.45508 -19.99505 -19.61117 -18.26320 -17.17512 -16.73005 -16.46669 -16.27600 -15.77107 -15.64538 -15.37704 -15.21047 -14.94540 -14.69270 -14.36509 -14.19671 -14.08652 -13.51873 -13.29567 -13.07050 -12.79711 -12.69920 -12.56304 -12.36040 -12.23465 -11.85613 -11.53944 -11.46033 -11.37656 -11.09284 -11.04823 -10.86318 -10.60461 -10.55498 -10.40051 -10.01132 -9.99558 -9.88339 -9.69045 -9.33842 -9.28794 -8.45627 -8.37767 -7.68176 -6.09469 -4.14668 2.20124 2.37632 2.90882 3.23869 3.26032 3.34012 3.37399 3.43963 3.63166 4.06467 4.15535 4.19717 4.30906 4.38919 4.53779 4.74244 4.80197 4.92399 4.97461 5.06516 5.13564 5.20268 5.22787 5.26737 5.30658 5.38657 5.42849 5.44193 5.54517 5.58945 5.70656 5.74952 5.99591 6.01808 6.06646 6.15564 6.21741 6.27154 6.49853 6.57888 6.74404 6.82266 7.23910 7.49027 7.58863 7.68136 7.76355 7.93180 8.22770 8.36535 8.46572 8.91942 9.49952 11.01665 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.001775 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.894150 B =15774.786872 C =16600.681095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.092 0.908 4 N -0.739 5.739 5 C 0.715 3.285 6 O -0.567 6.567 7 N -0.645 5.645 8 C 0.291 3.709 9 C -0.278 4.278 10 C 0.054 3.946 11 N -0.343 5.343 12 C 0.134 3.866 13 C 0.015 3.985 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.310 5.310 23 C -0.098 4.098 24 C -0.156 4.156 25 C 0.060 3.940 26 O -0.383 6.383 27 C 0.061 3.939 28 C -0.151 4.151 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.395 0.605 33 H 0.408 0.592 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 0.068 24.900 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 H 0.110 0.890 4 N -0.396 5.396 5 C 0.414 3.586 6 O -0.442 6.442 7 N -0.295 5.295 8 C 0.035 3.965 9 C -0.309 4.309 10 C -0.094 4.094 11 N -0.125 5.125 12 C 0.014 3.986 13 C -0.023 4.023 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 N -0.140 5.140 23 C -0.117 4.117 24 C -0.194 4.194 25 C -0.016 4.016 26 O -0.302 6.302 27 C -0.016 4.016 28 C -0.189 4.189 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.243 0.757 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.334 -0.027 24.307 27.725 hybrid contribution 0.652 -0.270 -0.848 1.103 sum -12.682 -0.297 23.460 26.670 Atomic orbital electron populations 1.22329 0.95278 1.02337 1.02780 1.20773 0.94066 0.96997 0.81775 0.88977 1.45181 1.71979 1.13738 1.08669 1.15632 0.78253 0.84938 0.79768 1.90862 1.55743 1.13879 1.83741 1.41444 1.68348 1.13394 1.06335 1.18770 1.00337 0.91519 0.85830 1.21608 1.16746 0.95548 0.97014 1.22599 0.99865 0.92994 0.93918 1.48770 1.48636 1.05333 1.09788 1.22274 1.00766 1.02366 0.73150 1.19364 0.87695 0.97535 0.97660 1.21080 1.00084 1.43989 0.91515 0.92234 1.25009 0.96528 0.95135 0.97558 1.69999 1.07765 1.43066 1.31870 0.86459 0.78586 0.77800 0.84688 1.19617 1.20932 1.20909 1.77356 1.27303 1.12892 0.96456 1.21480 1.00924 0.95105 0.94180 1.22350 1.02838 0.95667 0.98536 1.22576 0.98378 0.95451 0.85229 1.87946 1.71715 1.24569 1.45978 1.22583 0.98370 0.82655 0.98014 1.22285 1.02725 0.99764 0.94132 0.91366 0.91737 0.92202 0.76997 0.75702 0.81745 0.81158 0.90795 0.89528 0.96089 0.94845 0.92852 0.90224 0.90071 0.90899 0.93135 0.88775 0.93131 0.88720 0.90330 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.78 37.16 0.33 -0.94 16 2 C 0.17 1.31 2.41 -67.93 -0.16 1.14 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 N -0.74 -6.49 5.00 -58.67 -0.29 -6.79 16 5 C 0.71 9.50 8.50 -86.92 -0.74 8.76 16 6 O -0.57 -9.34 13.13 5.28 0.07 -9.27 16 7 N -0.65 -9.12 5.46 -15.51 -0.08 -9.21 16 8 C 0.29 5.33 8.11 -154.36 -1.25 4.08 16 9 C -0.28 -4.98 9.61 -39.84 -0.38 -5.36 16 10 C 0.05 0.94 11.44 -17.24 -0.20 0.74 16 11 N -0.34 -6.86 3.68 -61.38 -0.23 -7.08 16 12 C 0.13 2.74 6.44 -4.04 -0.03 2.72 16 13 C 0.02 0.39 5.16 -27.88 -0.14 0.25 16 14 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 18 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 N -0.31 -6.43 12.43 31.44 0.39 -6.04 16 23 C -0.10 -0.56 2.26 -90.44 -0.20 -0.76 16 24 C -0.16 -0.79 4.92 -26.59 -0.13 -0.93 16 25 C 0.06 0.34 6.84 37.21 0.25 0.59 16 26 O -0.38 -2.90 10.77 -35.23 -0.38 -3.28 16 27 C 0.06 0.33 6.84 37.20 0.25 0.59 16 28 C -0.15 -0.78 5.15 -26.59 -0.14 -0.92 16 29 H 0.07 0.42 6.36 -51.93 -0.33 0.09 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.41 6.37 -51.93 -0.33 0.08 16 32 H 0.40 2.48 6.95 -40.82 -0.28 2.19 16 33 H 0.41 4.62 8.84 -40.82 -0.36 4.26 16 34 H 0.17 2.92 5.91 -52.48 -0.31 2.61 16 35 H 0.17 2.25 8.06 -52.48 -0.42 1.83 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.45 6.28 -51.93 -0.33 0.13 16 43 H 0.07 0.30 6.64 -51.93 -0.34 -0.05 16 44 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.43 6.28 -51.93 -0.33 0.10 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -34.90 390.45 -9.49 -44.40 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.62 Total: 4.34 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.95 Total: -3.28 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.52 Total: -55.01 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.31 Total: -12.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.90 -9.49 -44.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097016033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.801 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds