Wall clock time and date at job start Tue Mar 31 2020 05:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46756 * 2 1 4 4 N 1.46499 * 109.47215 * 239.99920 * 2 1 3 5 5 C 1.34777 * 120.00065 * 84.99926 * 4 2 1 6 6 O 1.21593 * 119.99923 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.40194 * 119.99945 * 180.27819 * 7 5 4 9 9 C 1.40400 * 125.97290 * 359.43673 * 8 7 5 10 10 C 1.35239 * 107.86845 * 179.86648 * 9 8 7 11 11 N 1.34968 * 107.85956 * 0.39102 * 10 9 8 12 12 C 1.46493 * 125.97621 * 179.71462 * 11 10 9 13 13 C 1.53002 * 109.46960 * 125.02157 * 12 11 10 14 14 C 1.50706 * 109.47129 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99658 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99527 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00151 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47111 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46867 * 120.00081 * 18 16 14 21 21 H 1.48499 * 109.47361 * 239.99904 * 18 16 14 22 22 N 1.31208 * 125.97117 * 179.74638 * 8 7 5 23 23 C 1.52997 * 109.46664 * 119.99993 * 2 1 3 24 24 C 1.53173 * 109.54727 * 59.82623 * 23 2 1 25 25 C 1.53104 * 109.16013 * 183.23711 * 24 23 2 26 26 O 1.42903 * 109.48404 * 57.47387 * 25 24 23 27 27 C 1.42899 * 114.09785 * 298.88835 * 26 25 24 28 28 C 1.53089 * 109.41662 * 61.16086 * 27 26 25 29 29 H 1.08996 * 109.46971 * 300.00207 * 1 2 3 30 30 H 1.09001 * 109.46861 * 60.00121 * 1 2 3 31 31 H 1.08999 * 109.47179 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00386 * 265.00295 * 4 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 34 34 H 1.08006 * 126.06402 * 0.02562 * 9 8 7 35 35 H 1.08007 * 126.07492 * 180.11339 * 10 9 8 36 36 H 1.09001 * 109.47207 * 245.01894 * 12 11 10 37 37 H 1.09001 * 109.47468 * 5.02133 * 12 11 10 38 38 H 1.08998 * 109.47147 * 299.99405 * 13 12 11 39 39 H 1.08997 * 109.47283 * 60.00153 * 13 12 11 40 40 H 0.97006 * 119.99444 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.54137 * 180.02562 * 23 2 1 42 42 H 1.09006 * 109.52413 * 303.05467 * 24 23 2 43 43 H 1.09004 * 109.52519 * 63.24041 * 24 23 2 44 44 H 1.08993 * 109.40394 * 297.49163 * 25 24 23 45 45 H 1.08997 * 109.48543 * 177.49856 * 25 24 23 46 46 H 1.09002 * 109.48165 * 301.17917 * 27 26 25 47 47 H 1.09000 * 109.48431 * 181.14151 * 27 26 25 48 48 H 1.08998 * 109.52442 * 182.49031 * 28 27 26 49 49 H 1.08999 * 109.52278 * 62.29727 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8584 1.1616 -2.4116 7 7 2.5959 -0.6538 -3.4577 8 6 2.7354 0.0470 -4.6639 9 6 2.4352 1.4031 -4.8693 10 6 2.7072 1.6973 -6.1609 11 7 3.1540 0.5716 -6.7566 12 6 3.5574 0.4420 -8.1589 13 6 4.9795 -0.1179 -8.2309 14 6 5.3943 -0.2518 -9.6735 15 1 4.7117 0.0334 -10.4603 16 6 6.6448 -0.7396 -9.9889 17 7 7.4753 -1.0883 -9.0307 18 14 7.1586 -0.9063 -11.7770 19 1 6.0511 -0.4501 -12.6549 20 1 8.3623 -0.0728 -12.0259 21 1 7.4712 -2.3277 -12.0718 22 7 3.1637 -0.4512 -5.7996 23 6 2.0400 -0.7213 1.2493 24 6 1.5267 -2.1644 1.2532 25 6 1.9742 -2.8534 2.5451 26 8 1.4893 -2.1177 3.6702 27 6 1.9759 -0.7761 3.7437 28 6 1.5266 -0.0031 2.5011 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 2.8266 -1.5949 -3.4141 34 1 2.0570 2.0901 -4.1267 35 1 2.5841 2.6608 -6.6333 36 1 2.8742 -0.2344 -8.6725 37 1 3.5277 1.4209 -8.6376 38 1 5.6627 0.5586 -7.7174 39 1 5.0092 -1.0967 -7.7523 40 1 8.3553 -1.4311 -9.2526 41 1 3.1300 -0.7216 1.2507 42 1 0.4379 -2.1640 1.2003 43 1 1.9337 -2.6982 0.3943 44 1 3.0630 -2.8909 2.5771 45 1 1.5743 -3.8670 2.5740 46 1 3.0648 -0.7864 3.7914 47 1 1.5773 -0.2932 4.6359 48 1 1.9337 1.0075 2.5338 49 1 0.4379 0.0425 2.4742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097016033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:18 Heat of formation + Delta-G solvation = -27.074386 kcal Electronic energy + Delta-G solvation = -28457.951802 eV Core-core repulsion = 24420.731218 eV Total energy + Delta-G solvation = -4037.220584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33495 -41.29780 -40.25564 -37.55183 -36.37549 -35.54538 -34.25215 -33.47995 -32.00884 -31.22601 -30.61922 -29.98509 -26.77897 -26.37767 -24.65190 -24.11994 -23.21326 -22.58497 -21.73785 -21.25267 -20.29387 -19.31487 -18.76637 -18.11648 -17.29901 -16.92762 -16.81629 -16.77725 -16.51208 -16.19229 -16.10521 -15.69048 -15.61454 -15.30336 -14.98271 -14.58307 -14.46998 -14.12798 -14.05207 -13.83656 -13.67573 -13.43554 -13.19367 -12.93930 -12.93224 -12.62077 -12.40211 -12.28258 -12.01700 -11.92929 -11.92496 -11.60395 -11.50736 -11.45784 -11.37295 -11.12576 -11.05446 -10.61653 -10.50494 -10.19137 -9.79833 -9.10010 -8.23910 -6.37605 0.97160 1.06662 1.41872 1.42223 1.55766 1.66399 1.97948 2.37279 2.40664 3.01425 3.10339 3.10662 3.60827 3.71665 3.80362 3.84572 4.10159 4.11872 4.27677 4.33722 4.36701 4.43394 4.44056 4.56633 4.60673 4.66538 4.70556 4.75007 4.82636 4.84523 4.86626 4.89391 4.96393 4.98361 5.11595 5.16616 5.19449 5.23407 5.39742 5.49184 5.50633 5.55507 5.71892 5.79060 5.88766 6.06676 6.28628 6.31895 6.65900 6.79843 7.06372 7.32937 7.41345 8.88699 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.001775 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.894150 B =15774.786872 C =16600.681095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.074 0.926 4 N -0.718 5.718 5 C 0.712 3.288 6 O -0.599 6.599 7 N -0.640 5.640 8 C 0.293 3.707 9 C -0.292 4.292 10 C 0.067 3.933 11 N -0.362 5.362 12 C 0.148 3.852 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.282 1.282 22 N -0.356 5.356 23 C -0.089 4.089 24 C -0.153 4.153 25 C 0.057 3.943 26 O -0.405 6.405 27 C 0.058 3.942 28 C -0.148 4.148 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.420 0.580 34 H 0.167 0.833 35 H 0.213 0.787 36 H 0.080 0.920 37 H 0.118 0.882 38 H -0.013 1.013 39 H -0.007 1.007 40 H 0.264 0.736 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.054 0.946 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 0.360 24.670 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.065 3.935 3 H 0.093 0.907 4 N -0.375 5.375 5 C 0.412 3.588 6 O -0.477 6.477 7 N -0.292 5.292 8 C 0.037 3.963 9 C -0.323 4.323 10 C -0.080 4.080 11 N -0.144 5.144 12 C 0.028 3.972 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.798 3.202 19 H -0.177 1.177 20 H -0.205 1.205 21 H -0.208 1.208 22 N -0.187 5.187 23 C -0.109 4.109 24 C -0.191 4.191 25 C -0.020 4.020 26 O -0.324 6.324 27 C -0.019 4.019 28 C -0.186 4.186 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.257 0.743 34 H 0.184 0.816 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.006 0.994 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.073 0.927 47 H 0.122 0.878 48 H 0.103 0.897 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.233 0.231 24.123 28.010 hybrid contribution 0.894 -0.354 -0.615 1.141 sum -13.339 -0.123 23.509 27.030 Atomic orbital electron populations 1.22278 0.94830 1.02823 1.02230 1.20863 0.94341 0.96376 0.81940 0.90734 1.45093 1.70620 1.14341 1.07481 1.15805 0.77963 0.84697 0.80346 1.90833 1.57111 1.15418 1.84305 1.41477 1.68295 1.13927 1.05472 1.19111 0.98741 0.92101 0.86377 1.21775 1.17483 0.95529 0.97546 1.23258 0.97577 0.93542 0.93597 1.48662 1.50037 1.06146 1.09591 1.21999 0.97133 1.03832 0.74192 1.19123 0.90720 0.94900 0.96466 1.21565 1.00513 1.43397 0.92550 0.90490 1.26060 0.96690 0.94684 1.02557 1.70156 1.08323 1.44310 1.34607 0.85265 0.78527 0.77681 0.78737 1.17725 1.20545 1.20752 1.77292 1.29526 1.14299 0.97557 1.21406 1.00887 0.95392 0.93166 1.22337 1.02711 0.95151 0.98895 1.22682 0.98703 0.95731 0.84841 1.87918 1.72212 1.25463 1.46808 1.22690 0.98687 0.82029 0.98472 1.22270 1.02708 1.00005 0.93652 0.89898 0.94288 0.91172 0.75235 0.74295 0.81557 0.77052 0.90175 0.86359 0.99440 0.98879 0.92761 0.90159 0.90272 0.89733 0.92710 0.88015 0.92729 0.87793 0.89696 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.78 71.98 0.63 -1.67 16 2 C 0.17 2.47 2.41 44.99 0.11 2.58 16 3 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 4 N -0.72 -11.96 5.00 -457.81 -2.29 -14.25 16 5 C 0.71 18.74 8.50 179.05 1.52 20.26 16 6 O -0.60 -19.80 13.13 -4.01 -0.05 -19.86 16 7 N -0.64 -18.08 5.46 -321.23 -1.75 -19.83 16 8 C 0.29 10.81 8.11 133.31 1.08 11.89 16 9 C -0.29 -10.35 9.61 22.10 0.21 -10.14 16 10 C 0.07 2.23 11.44 83.52 0.96 3.19 16 11 N -0.36 -14.37 3.68 -348.11 -1.28 -15.65 16 12 C 0.15 5.99 6.44 86.38 0.56 6.54 16 13 C 0.03 1.37 5.16 29.85 0.15 1.52 16 14 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 15 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 17 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 18 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 19 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 N -0.36 -15.07 12.43 -54.44 -0.68 -15.75 16 23 C -0.09 -0.89 2.26 -10.68 -0.02 -0.91 16 24 C -0.15 -1.28 4.92 30.69 0.15 -1.13 16 25 C 0.06 0.55 6.84 72.02 0.49 1.04 16 26 O -0.40 -5.58 10.77 -148.98 -1.60 -7.18 16 27 C 0.06 0.55 6.84 72.01 0.49 1.05 16 28 C -0.15 -1.31 5.15 30.68 0.16 -1.16 16 29 H 0.08 0.92 6.36 -2.39 -0.02 0.91 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.84 6.37 -2.39 -0.02 0.83 16 32 H 0.41 4.49 6.95 -92.71 -0.64 3.85 16 33 H 0.42 9.44 8.84 -92.71 -0.82 8.63 16 34 H 0.17 5.86 5.91 -2.91 -0.02 5.84 16 35 H 0.21 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.10 16 37 H 0.12 3.99 8.07 -2.39 -0.02 3.97 16 38 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.73 6.28 -2.38 -0.01 0.71 16 43 H 0.08 0.50 6.64 -2.38 -0.02 0.49 16 44 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.08 0.73 6.28 -2.39 -0.01 0.71 16 Total: -1.00 -77.63 390.45 1.36 -76.27 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.48 Total: 24.07 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 7.19 Total: 3.86 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -5.72 Total: -122.48 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.66 Total: -27.04 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -77.63 1.36 -76.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097016033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.199 kcal (2) G-P(sol) polarization free energy of solvation -77.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds