Wall clock time and date at job start Tue Mar 31 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47369 * 2 1 4 4 N 1.46503 * 109.46992 * 120.00063 * 2 1 3 5 5 C 1.34775 * 120.00069 * 274.99829 * 4 2 1 6 6 O 1.21594 * 119.99767 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00065 * 179.97438 * 5 4 2 8 8 C 1.40192 * 120.00049 * 180.02562 * 7 5 4 9 9 C 1.40402 * 125.97032 * 359.97438 * 8 7 5 10 10 C 1.35245 * 107.86627 * 179.70432 * 9 8 7 11 11 N 1.34964 * 107.85965 * 0.26430 * 10 9 8 12 12 C 1.46495 * 125.98003 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46877 * 125.00357 * 12 11 10 14 14 C 1.50701 * 109.47214 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00095 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00208 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00315 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99900 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47390 * 60.00018 * 18 16 14 20 20 H 1.48504 * 109.46881 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47115 * 299.99414 * 18 16 14 22 22 N 1.31206 * 125.97560 * 180.17721 * 8 7 5 23 23 C 1.53004 * 109.46905 * 239.99838 * 2 1 3 24 24 C 1.53179 * 109.54180 * 179.82143 * 23 2 1 25 25 C 1.53103 * 109.15785 * 183.24075 * 24 23 2 26 26 O 1.42901 * 109.48522 * 57.47713 * 25 24 23 27 27 C 1.42904 * 114.09878 * 298.88908 * 26 25 24 28 28 C 1.53100 * 109.41510 * 61.15747 * 27 26 25 29 29 H 1.08999 * 109.46989 * 59.99593 * 1 2 3 30 30 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47125 * 300.00199 * 1 2 3 32 32 H 0.97005 * 119.99875 * 95.00134 * 4 2 1 33 33 H 0.97005 * 119.99878 * 0.02562 * 7 5 4 34 34 H 1.08002 * 126.07048 * 359.97438 * 9 8 7 35 35 H 1.08000 * 126.07435 * 180.26799 * 10 9 8 36 36 H 1.08994 * 109.47532 * 245.00383 * 12 11 10 37 37 H 1.08999 * 109.47116 * 5.01096 * 12 11 10 38 38 H 1.09002 * 109.47329 * 300.00283 * 13 12 11 39 39 H 1.09001 * 109.47367 * 60.00606 * 13 12 11 40 40 H 0.96996 * 120.00640 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.54410 * 300.00147 * 23 2 1 42 42 H 1.08998 * 109.52714 * 303.06286 * 24 23 2 43 43 H 1.09001 * 109.51693 * 63.24768 * 24 23 2 44 44 H 1.09000 * 109.40614 * 297.50049 * 25 24 23 45 45 H 1.08994 * 109.48081 * 177.50260 * 25 24 23 46 46 H 1.08998 * 109.48387 * 301.17635 * 27 26 25 47 47 H 1.09002 * 109.48408 * 181.13803 * 27 26 25 48 48 H 1.08995 * 109.52145 * 182.48593 * 28 27 26 49 49 H 1.08995 * 109.57266 * 62.32790 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1616 2.4116 7 7 2.5958 -0.6538 3.4577 8 6 2.7292 0.0454 4.6655 9 6 2.4337 1.4027 4.8696 10 6 2.6881 1.6924 6.1659 11 7 3.1335 0.5664 6.7620 12 6 3.5262 0.4339 8.1671 13 6 2.7291 -0.7003 8.8146 14 6 3.1326 -0.8362 10.2602 15 1 3.8829 -0.1796 10.6755 16 6 2.5448 -1.7995 11.0524 17 7 1.6316 -2.5994 10.5467 18 14 3.0456 -1.9684 12.8441 19 1 2.7658 -0.6969 13.5583 20 1 2.2718 -3.0692 13.4726 21 1 4.4966 -2.2732 12.9259 22 7 3.1555 -0.4532 5.8018 23 6 2.0400 -0.7213 -1.2493 24 6 3.5718 -0.7184 -1.2532 25 6 4.0721 -1.3700 -2.5452 26 8 3.5402 -0.6677 -3.6703 27 6 2.1131 -0.6792 -3.7438 28 6 1.5340 0.0021 -2.5010 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6318 1.1526 33 1 2.8265 -1.5950 3.4142 34 1 2.0643 2.0921 4.1247 35 1 2.5580 2.6540 6.6401 36 1 4.5912 0.2099 8.2271 37 1 3.3211 1.3673 8.6912 38 1 1.6641 -0.4763 8.7545 39 1 2.9342 -1.6338 8.2905 40 1 1.2183 -3.2773 11.1038 41 1 1.6773 -1.7491 -1.2504 42 1 3.9343 0.3082 -1.2003 43 1 3.9392 -1.2800 -0.3943 44 1 3.7445 -2.4091 -2.5772 45 1 5.1610 -1.3309 -2.5739 46 1 1.7598 -1.7092 -3.7914 47 1 1.7906 -0.1424 -4.6360 48 1 0.4455 -0.0447 -2.5338 49 1 1.8531 1.0440 -2.4736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097016035.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:21 Heat of formation + Delta-G solvation = -6.671564 kcal Electronic energy + Delta-G solvation = -28467.611439 eV Core-core repulsion = 24431.275588 eV Total energy + Delta-G solvation = -4036.335851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03644 -40.32233 -39.44196 -36.74948 -34.93112 -33.88684 -33.26599 -31.86936 -31.68330 -30.15570 -29.52770 -28.35694 -25.87946 -24.77724 -23.94930 -22.85853 -21.55760 -21.35632 -20.79261 -20.29992 -19.77224 -18.19710 -17.17705 -16.67486 -16.45131 -16.36721 -16.02262 -15.55423 -15.23127 -14.95706 -14.72431 -14.60434 -14.51972 -14.17240 -13.95982 -13.62686 -13.31767 -13.09695 -12.86210 -12.68673 -12.55244 -12.24072 -12.08501 -11.92196 -11.76428 -11.52575 -11.18125 -11.09086 -11.05002 -10.86873 -10.71978 -10.58431 -10.39279 -10.01065 -9.97052 -9.87831 -9.68586 -9.32828 -9.31114 -8.44622 -8.37411 -7.67849 -6.08719 -4.14198 2.20215 2.37916 2.91296 3.24041 3.28495 3.33462 3.35871 3.45496 3.63593 4.04858 4.09752 4.27528 4.34658 4.39330 4.54093 4.75295 4.85562 4.92823 4.99413 5.06828 5.17088 5.20852 5.23808 5.27193 5.28896 5.40327 5.42785 5.44102 5.57716 5.60514 5.67261 5.85067 5.99373 6.00734 6.02311 6.15790 6.22389 6.27484 6.50158 6.58148 6.76024 6.82581 7.24270 7.49108 7.59202 7.68111 7.76802 7.93549 8.23147 8.36847 8.47029 8.91935 9.50295 11.02311 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.001739 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.886009 B =16097.557782 C =16279.060170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.092 0.908 4 N -0.738 5.738 5 C 0.715 3.285 6 O -0.567 6.567 7 N -0.645 5.645 8 C 0.291 3.709 9 C -0.278 4.278 10 C 0.054 3.946 11 N -0.343 5.343 12 C 0.134 3.866 13 C 0.016 3.984 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.310 5.310 23 C -0.097 4.097 24 C -0.151 4.151 25 C 0.060 3.940 26 O -0.384 6.384 27 C 0.061 3.939 28 C -0.150 4.150 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.408 0.592 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 3.471 -28.528 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.064 3.936 3 H 0.110 0.890 4 N -0.394 5.394 5 C 0.415 3.585 6 O -0.442 6.442 7 N -0.295 5.295 8 C 0.036 3.964 9 C -0.309 4.309 10 C -0.094 4.094 11 N -0.125 5.125 12 C 0.014 3.986 13 C -0.022 4.022 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 N -0.140 5.140 23 C -0.116 4.116 24 C -0.189 4.189 25 C -0.016 4.016 26 O -0.303 6.303 27 C -0.016 4.016 28 C -0.188 4.188 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.230 0.770 33 H 0.243 0.757 34 H 0.182 0.818 35 H 0.188 0.812 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.068 0.932 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.506 3.471 -27.864 28.084 hybrid contribution -0.121 -0.635 0.946 1.146 sum 0.385 2.835 -26.919 27.070 Atomic orbital electron populations 1.22272 0.95195 1.02237 1.02919 1.20827 0.93872 0.97198 0.81734 0.89024 1.45118 1.71983 1.13646 1.08660 1.15616 0.78237 0.84952 0.79740 1.90865 1.55676 1.13938 1.83729 1.41444 1.68415 1.13431 1.06233 1.18768 1.00646 0.91377 0.85653 1.21610 1.16795 0.95561 0.96948 1.22599 1.00164 0.92974 0.93647 1.48767 1.49129 1.05277 1.09354 1.22273 1.00548 1.02967 0.72769 1.19353 0.95133 0.92688 0.95004 1.21003 1.23229 1.17812 0.94785 0.92345 1.25000 0.94862 0.95491 0.98792 1.69968 1.26436 1.19878 1.36424 0.86576 0.78656 0.77753 0.84528 1.20123 1.21213 1.20111 1.77353 1.27932 1.12640 0.96095 1.21491 0.95725 1.00184 0.94165 1.22247 0.95202 1.02952 0.98481 1.22593 0.99083 0.94677 0.85275 1.87951 1.20399 1.75876 1.46033 1.22584 0.81088 0.99900 0.98019 1.22262 1.01431 1.00938 0.94140 0.91403 0.92494 0.91558 0.77043 0.75696 0.81751 0.81165 0.90803 0.89533 0.96101 0.94858 0.92732 0.90428 0.90649 0.90585 0.93206 0.88796 0.93178 0.88753 0.90116 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.14 37.16 0.34 -0.92 16 2 C 0.17 1.30 2.16 -67.93 -0.15 1.15 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 N -0.74 -6.35 4.45 -58.67 -0.26 -6.61 16 5 C 0.72 9.42 8.50 -86.92 -0.74 8.68 16 6 O -0.57 -9.33 13.13 5.28 0.07 -9.26 16 7 N -0.65 -9.06 5.45 -15.51 -0.08 -9.14 16 8 C 0.29 5.32 8.11 -154.37 -1.25 4.07 16 9 C -0.28 -4.98 9.61 -39.83 -0.38 -5.36 16 10 C 0.05 0.94 11.44 -17.24 -0.20 0.74 16 11 N -0.34 -6.86 3.68 -61.39 -0.23 -7.09 16 12 C 0.13 2.75 6.44 -4.04 -0.03 2.72 16 13 C 0.02 0.41 5.16 -27.88 -0.14 0.27 16 14 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 18 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 N -0.31 -6.43 12.43 31.44 0.39 -6.04 16 23 C -0.10 -0.53 1.91 -90.43 -0.17 -0.70 16 24 C -0.15 -0.92 5.22 -26.59 -0.14 -1.06 16 25 C 0.06 0.37 6.84 37.21 0.25 0.62 16 26 O -0.38 -3.04 10.77 -35.23 -0.38 -3.42 16 27 C 0.06 0.33 6.84 37.21 0.25 0.59 16 28 C -0.15 -0.76 4.98 -26.59 -0.13 -0.89 16 29 H 0.07 0.40 6.51 -51.93 -0.34 0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.40 2.36 8.43 -40.82 -0.34 2.02 16 33 H 0.41 4.58 8.84 -40.82 -0.36 4.22 16 34 H 0.17 2.92 5.91 -52.49 -0.31 2.61 16 35 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.43 7.58 -51.93 -0.39 0.03 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.32 6.63 -51.93 -0.34 -0.02 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -34.91 396.31 -9.64 -44.54 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.94 Total: 4.10 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.89 Total: -3.37 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.56 Total: -54.78 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.31 Total: -12.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.91 -9.64 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097016035.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.873 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds