Wall clock time and date at job start Tue Mar 31 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.50694 * 109.47222 * 120.00441 * 2 1 3 5 5 H 1.08004 * 120.00672 * 120.00263 * 4 2 1 6 6 C 1.37879 * 120.00074 * 299.99927 * 4 2 1 7 7 N 1.31524 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00374 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47369 * 90.00072 * 8 6 4 10 10 H 1.48505 * 109.47087 * 210.00322 * 8 6 4 11 11 H 1.48502 * 109.46829 * 329.99635 * 8 6 4 12 12 N 1.46499 * 109.46957 * 240.00193 * 2 1 3 13 13 C 1.34777 * 119.99818 * 85.00493 * 12 2 1 14 14 O 1.21583 * 120.00335 * 359.97438 * 13 12 2 15 15 C 1.47540 * 120.00170 * 180.02562 * 13 12 2 16 16 C 1.39703 * 120.18879 * 0.28742 * 15 13 12 17 17 C 1.37797 * 119.90752 * 180.25680 * 16 15 13 18 18 C 1.38556 * 120.30689 * 359.74990 * 17 16 15 19 19 C 1.38053 * 120.38580 * 359.97371 * 18 17 16 20 20 C 1.38721 * 120.08562 * 0.02562 * 19 18 17 21 21 O 1.35653 * 120.15239 * 180.02562 * 20 19 18 22 22 C 1.35693 * 117.99816 * 5.73496 * 21 20 19 23 23 C 1.38664 * 120.14764 * 261.33007 * 22 21 20 24 24 C 1.38104 * 120.08701 * 179.74974 * 23 22 21 25 25 C 1.38514 * 120.39656 * 359.97438 * 24 23 22 26 26 C 1.37833 * 120.30013 * 359.97438 * 25 24 23 27 27 C 1.39708 * 119.89802 * 0.02635 * 26 25 24 28 28 C 1.43206 * 120.18750 * 179.97438 * 27 26 25 29 29 N 6.65491 * 70.99373 * 273.40359 * 2 1 3 30 30 H 1.08993 * 109.47043 * 299.99342 * 1 2 3 31 31 H 1.09001 * 109.47213 * 59.99836 * 1 2 3 32 32 H 1.09003 * 109.46718 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99758 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00366 * 264.99615 * 12 2 1 35 35 H 1.07993 * 120.04957 * 0.02562 * 16 15 13 36 36 H 1.08006 * 119.84993 * 179.76793 * 17 16 15 37 37 H 1.07999 * 119.80558 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.95259 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.95820 * 359.72238 * 23 22 21 40 40 H 1.08002 * 119.80399 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.85400 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.05194 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4119 10 1 1.3444 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8576 1.1615 -2.4118 15 6 2.6383 -0.7137 -3.5620 16 6 2.9654 -2.0707 -3.5055 17 6 3.4287 -2.7133 -4.6330 18 6 3.5671 -2.0210 -5.8252 19 6 3.2421 -0.6811 -5.8965 20 6 2.7742 -0.0183 -4.7713 21 8 2.4540 1.2981 -4.8399 22 6 2.4928 1.9007 -6.0551 23 6 3.5982 2.6516 -6.4251 24 6 3.6386 3.2600 -7.6642 25 6 2.5788 3.1255 -8.5459 26 6 1.4725 2.3819 -8.1953 27 6 1.4185 1.7611 -6.9449 28 6 0.2719 0.9875 -6.5739 29 7 -0.6373 0.3736 -6.2810 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7087 1.1611 3.4845 34 1 2.2491 -1.6317 -1.1527 35 1 2.8589 -2.6145 -2.5786 36 1 3.6849 -3.7615 -4.5873 37 1 3.9313 -2.5325 -6.7038 38 1 3.3523 -0.1484 -6.8295 39 1 4.4285 2.7613 -5.7432 40 1 4.5016 3.8443 -7.9475 41 1 2.6194 3.6054 -9.5126 42 1 0.6487 2.2793 -8.8860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097047248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:59 Heat of formation + Delta-G solvation = 24.504724 kcal Electronic energy + Delta-G solvation = -27825.238987 eV Core-core repulsion = 23929.438116 eV Total energy + Delta-G solvation = -3895.800872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30565 -39.49953 -38.16558 -37.33981 -36.50306 -34.70995 -32.48868 -31.75481 -31.44461 -30.90989 -29.72957 -28.53345 -25.21883 -24.46855 -23.87139 -23.68297 -21.94413 -21.08028 -19.55425 -19.40640 -18.56913 -17.64056 -16.69798 -16.50260 -16.01069 -15.59179 -15.11368 -14.84157 -14.74021 -14.56056 -14.39375 -14.24713 -13.86608 -13.54893 -13.50368 -13.28257 -12.96415 -12.93255 -12.50955 -12.36123 -12.21774 -12.05777 -11.85599 -11.61839 -11.37309 -11.29986 -11.04296 -10.94834 -10.68608 -10.26928 -10.19215 -9.43813 -9.20074 -9.07875 -9.00424 -8.96347 -8.50996 -8.37428 -7.81940 -6.08657 -4.17954 0.30056 0.73452 0.94740 1.27593 2.56854 2.65988 2.99360 3.26712 3.28715 3.33087 3.35088 3.53926 3.65514 4.05209 4.15668 4.39124 4.41149 4.53348 4.70279 4.71122 4.82284 4.89359 4.95179 5.07470 5.20021 5.23434 5.37733 5.42224 5.61435 5.74442 5.78391 5.82829 5.92649 6.09671 6.17522 6.23589 6.35389 6.66228 6.89075 7.04356 7.21104 7.36677 7.43524 7.51612 7.62334 7.74409 7.96847 8.19397 8.71037 8.82620 9.18264 9.49496 10.97394 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.002964 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.618982 B = 9445.609013 C =10003.981765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.541 3.459 14 O -0.531 6.531 15 C -0.145 4.145 16 C -0.053 4.053 17 C -0.158 4.158 18 C -0.066 4.066 19 C -0.208 4.208 20 C 0.169 3.831 21 O -0.219 6.219 22 C 0.133 3.867 23 C -0.123 4.123 24 C -0.077 4.077 25 C -0.123 4.123 26 C -0.060 4.060 27 C -0.040 4.040 28 C 0.245 3.755 29 N -0.393 5.393 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 -0.478 -24.718 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.326 3.674 14 O -0.410 6.410 15 C -0.149 4.149 16 C -0.071 4.071 17 C -0.176 4.176 18 C -0.084 4.084 19 C -0.227 4.227 20 C 0.124 3.876 21 O -0.129 6.129 22 C 0.087 3.913 23 C -0.142 4.142 24 C -0.096 4.096 25 C -0.141 4.141 26 C -0.081 4.081 27 C -0.044 4.044 28 C -0.071 4.071 29 N -0.068 5.068 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.247 -0.331 -23.922 24.727 hybrid contribution 0.735 -0.682 0.722 1.235 sum 6.982 -1.013 -23.201 24.249 Atomic orbital electron populations 1.22078 0.98461 0.99111 1.00916 1.18743 0.91004 0.94012 0.79756 0.93250 1.21214 1.32403 1.13224 0.90324 0.92086 1.24894 0.94811 0.94985 0.99032 1.69915 1.35803 1.22495 1.23833 0.86446 0.78588 0.79825 0.82212 1.20555 1.21082 1.19853 1.46455 1.65139 1.13398 1.10351 1.17936 0.79413 0.86954 0.83056 1.90781 1.50375 1.15145 1.84673 1.19844 1.07471 0.94152 0.93467 1.21311 0.94464 0.92181 0.99177 1.21040 1.03229 1.00560 0.92755 1.21037 0.96269 0.93148 0.97939 1.21231 1.07096 0.96625 0.97732 1.19122 0.93307 0.81703 0.93485 1.84629 1.82173 1.20623 1.25498 1.18868 0.92731 0.95470 0.84195 1.21393 0.97125 0.98480 0.97154 1.21311 0.98746 0.97017 0.92522 1.21171 0.93224 0.99144 1.00570 1.21126 0.98765 0.94724 0.93453 1.16468 0.90703 1.01476 0.95756 1.25357 0.93349 0.94019 0.94358 1.81224 1.10537 1.08649 1.06367 0.89109 0.96653 0.95507 0.92591 0.78078 0.84400 0.85181 0.85359 0.85082 0.83735 0.84334 0.84379 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.26 37.16 0.34 -3.54 16 2 C 0.27 7.10 2.56 -69.08 -0.18 6.92 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.50 8.73 -34.44 -0.30 -14.80 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.81 5.30 -17.81 -0.09 1.72 16 7 N -0.88 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.70 -15.77 5.02 -55.98 -0.28 -16.05 16 13 C 0.54 12.10 7.73 -12.47 -0.10 12.00 16 14 O -0.53 -13.87 14.82 -16.58 -0.25 -14.12 16 15 C -0.15 -2.58 5.89 -104.84 -0.62 -3.20 16 16 C -0.05 -0.74 9.54 -39.20 -0.37 -1.11 16 17 C -0.16 -1.76 10.02 -39.63 -0.40 -2.16 16 18 C -0.07 -0.70 10.03 -39.53 -0.40 -1.09 16 19 C -0.21 -2.58 9.08 -39.47 -0.36 -2.94 16 20 C 0.17 2.73 6.27 -38.68 -0.24 2.49 16 21 O -0.22 -3.79 7.58 -24.08 -0.18 -3.97 16 22 C 0.13 1.69 4.10 -38.69 -0.16 1.53 16 23 C -0.12 -1.14 9.98 -39.47 -0.39 -1.53 16 24 C -0.08 -0.46 10.03 -39.53 -0.40 -0.86 16 25 C -0.12 -0.66 10.02 -39.63 -0.40 -1.06 16 26 C -0.06 -0.44 9.76 -39.18 -0.38 -0.83 16 27 C -0.04 -0.46 5.38 -106.69 -0.57 -1.04 16 28 C 0.25 3.63 14.53 -22.49 -0.33 3.31 16 29 N -0.39 -6.82 18.53 41.82 0.78 -6.04 16 30 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.39 7.40 6.57 -40.82 -0.27 7.13 16 35 H 0.14 1.71 6.40 -52.49 -0.34 1.38 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.34 6.67 -52.49 -0.35 0.99 16 39 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -35.75 370.31 -8.67 -44.43 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.59 Total: 5.23 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -5.34 Total: -6.17 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 1.12 Total: -46.93 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.43 Total: -18.09 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.75 -8.67 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.932 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds