Wall clock time and date at job start Tue Mar 31 2020 05:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.50694 * 109.47222 * 120.00441 * 2 1 3 5 5 H 1.08004 * 120.00672 * 120.00263 * 4 2 1 6 6 C 1.37879 * 120.00074 * 299.99927 * 4 2 1 7 7 N 1.31524 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00374 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47369 * 90.00072 * 8 6 4 10 10 H 1.48505 * 109.47087 * 210.00322 * 8 6 4 11 11 H 1.48502 * 109.46829 * 329.99635 * 8 6 4 12 12 N 1.46499 * 109.46957 * 240.00193 * 2 1 3 13 13 C 1.34777 * 119.99818 * 85.00493 * 12 2 1 14 14 O 1.21583 * 120.00335 * 359.97438 * 13 12 2 15 15 C 1.47540 * 120.00170 * 180.02562 * 13 12 2 16 16 C 1.39703 * 120.18879 * 0.28742 * 15 13 12 17 17 C 1.37797 * 119.90752 * 180.25680 * 16 15 13 18 18 C 1.38556 * 120.30689 * 359.74990 * 17 16 15 19 19 C 1.38053 * 120.38580 * 359.97371 * 18 17 16 20 20 C 1.38721 * 120.08562 * 0.02562 * 19 18 17 21 21 O 1.35653 * 120.15239 * 180.02562 * 20 19 18 22 22 C 1.35693 * 117.99816 * 5.73496 * 21 20 19 23 23 C 1.38664 * 120.14764 * 261.33007 * 22 21 20 24 24 C 1.38104 * 120.08701 * 179.74974 * 23 22 21 25 25 C 1.38514 * 120.39656 * 359.97438 * 24 23 22 26 26 C 1.37833 * 120.30013 * 359.97438 * 25 24 23 27 27 C 1.39708 * 119.89802 * 0.02635 * 26 25 24 28 28 C 1.43206 * 120.18750 * 179.97438 * 27 26 25 29 29 N 6.65491 * 70.99373 * 273.40359 * 2 1 3 30 30 H 1.08993 * 109.47043 * 299.99342 * 1 2 3 31 31 H 1.09001 * 109.47213 * 59.99836 * 1 2 3 32 32 H 1.09003 * 109.46718 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99758 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00366 * 264.99615 * 12 2 1 35 35 H 1.07993 * 120.04957 * 0.02562 * 16 15 13 36 36 H 1.08006 * 119.84993 * 179.76793 * 17 16 15 37 37 H 1.07999 * 119.80558 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.95259 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.95820 * 359.72238 * 23 22 21 40 40 H 1.08002 * 119.80399 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.85400 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.05194 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4119 10 1 1.3444 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8576 1.1615 -2.4118 15 6 2.6383 -0.7137 -3.5620 16 6 2.9654 -2.0707 -3.5055 17 6 3.4287 -2.7133 -4.6330 18 6 3.5671 -2.0210 -5.8252 19 6 3.2421 -0.6811 -5.8965 20 6 2.7742 -0.0183 -4.7713 21 8 2.4540 1.2981 -4.8399 22 6 2.4928 1.9007 -6.0551 23 6 3.5982 2.6516 -6.4251 24 6 3.6386 3.2600 -7.6642 25 6 2.5788 3.1255 -8.5459 26 6 1.4725 2.3819 -8.1953 27 6 1.4185 1.7611 -6.9449 28 6 0.2719 0.9875 -6.5739 29 7 -0.6373 0.3736 -6.2810 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7087 1.1611 3.4845 34 1 2.2491 -1.6317 -1.1527 35 1 2.8589 -2.6145 -2.5786 36 1 3.6849 -3.7615 -4.5873 37 1 3.9313 -2.5325 -6.7038 38 1 3.3523 -0.1484 -6.8295 39 1 4.4285 2.7613 -5.7432 40 1 4.5016 3.8443 -7.9475 41 1 2.6194 3.6054 -9.5126 42 1 0.6487 2.2793 -8.8860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097047248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:58 Heat of formation + Delta-G solvation = 2.374057 kcal Electronic energy + Delta-G solvation = -27826.198645 eV Core-core repulsion = 23929.438116 eV Total energy + Delta-G solvation = -3896.760530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28954 -40.76204 -39.44353 -38.36318 -37.61543 -36.73379 -34.43510 -32.69190 -32.45159 -31.84905 -30.77998 -30.28030 -27.40658 -25.32580 -25.16016 -24.46104 -23.03897 -22.60865 -21.26713 -20.44980 -19.68222 -18.94989 -17.82914 -17.68434 -17.46103 -17.02755 -16.31892 -16.14416 -15.92491 -15.76545 -15.62398 -15.32803 -15.11725 -14.75235 -14.66296 -14.51433 -14.35859 -14.27999 -14.01566 -13.74372 -13.28537 -13.09019 -12.99919 -12.90290 -12.87710 -12.78448 -12.73623 -12.34280 -12.27300 -12.14195 -12.04799 -11.17529 -10.80648 -10.62116 -10.19487 -10.09461 -9.87483 -9.79069 -9.37152 -8.20600 -6.39364 -0.44952 -0.19007 0.11950 0.28862 1.42660 1.44434 1.47457 1.55299 1.82693 1.95553 2.04563 2.31049 2.54852 2.72484 2.78577 2.81003 3.09560 3.67403 3.73704 3.77118 3.98686 4.07097 4.11043 4.26194 4.32459 4.34508 4.36526 4.59301 4.65909 4.78190 4.82659 4.86191 5.01568 5.07229 5.17502 5.23781 5.25802 5.35679 5.37433 5.38463 5.55563 5.60402 5.66134 5.79539 5.85184 6.02869 6.29477 6.48207 6.67454 6.90438 7.27639 7.48826 8.86473 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.016317 B = 0.002964 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.618982 B = 9445.609013 C =10003.981765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.978 3.022 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.257 1.257 12 N -0.702 5.702 13 C 0.536 3.464 14 O -0.584 6.584 15 C -0.191 4.191 16 C -0.056 4.056 17 C -0.150 4.150 18 C -0.046 4.046 19 C -0.207 4.207 20 C 0.152 3.848 21 O -0.261 6.261 22 C 0.098 3.902 23 C -0.133 4.133 24 C -0.055 4.055 25 C -0.103 4.103 26 C -0.047 4.047 27 C -0.070 4.070 28 C 0.265 3.735 29 N -0.459 5.459 30 H 0.071 0.929 31 H 0.001 0.999 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.147 0.853 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.693 -2.053 -28.058 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.802 3.198 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.181 1.181 12 N -0.352 5.352 13 C 0.325 3.675 14 O -0.466 6.466 15 C -0.195 4.195 16 C -0.074 4.074 17 C -0.168 4.168 18 C -0.064 4.064 19 C -0.226 4.226 20 C 0.108 3.892 21 O -0.172 6.172 22 C 0.053 3.947 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.121 4.121 26 C -0.067 4.067 27 C -0.074 4.074 28 C -0.050 4.050 29 N -0.135 5.135 30 H 0.089 0.911 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.195 0.805 41 H 0.201 0.799 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.913 -1.946 -27.294 28.778 hybrid contribution 0.007 -0.068 1.546 1.548 sum 8.920 -2.014 -25.748 27.324 Atomic orbital electron populations 1.21905 0.98691 0.99317 0.99197 1.18334 0.90801 0.91932 0.81850 0.98560 1.21521 1.32793 1.13711 0.90567 0.90594 1.25894 0.94738 0.95602 1.02530 1.70076 1.36902 1.24061 1.24726 0.85252 0.77802 0.79188 0.77533 1.20109 1.20836 1.18125 1.46180 1.65407 1.14049 1.09516 1.18726 0.78087 0.86555 0.84167 1.90727 1.52644 1.17583 1.85659 1.19612 1.11809 0.95969 0.92127 1.21510 0.94324 0.90624 1.00985 1.21492 1.01462 1.02235 0.91633 1.21650 0.93338 0.92210 0.99230 1.21521 1.06287 0.97551 0.97194 1.19462 0.93656 0.82010 0.94097 1.84581 1.82572 1.21433 1.28586 1.19284 0.94650 0.97125 0.83635 1.21525 0.96163 0.98678 0.98744 1.21787 0.99958 0.95059 0.90544 1.21697 0.91398 0.97110 1.01865 1.21497 1.00204 0.93368 0.91663 1.16692 0.89538 1.03438 0.97689 1.26067 0.93230 0.92975 0.92719 1.81203 1.12757 1.11157 1.08378 0.91068 0.97997 0.94104 0.92453 0.76165 0.83571 0.81216 0.80737 0.82934 0.84056 0.80478 0.79858 0.81954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.47 9.26 71.98 0.67 -6.80 16 2 C 0.27 15.60 2.56 44.24 0.11 15.72 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.55 -30.64 8.73 25.60 0.22 -30.42 16 5 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -55.16 11.32 21.45 0.24 -54.91 16 8 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 12 N -0.70 -33.50 5.02 -449.28 -2.26 -35.75 16 13 C 0.54 26.07 7.73 86.70 0.67 26.74 16 14 O -0.58 -33.75 14.82 16.94 0.25 -33.50 16 15 C -0.19 -7.19 5.89 -20.00 -0.12 -7.31 16 16 C -0.06 -1.55 9.54 22.52 0.21 -1.33 16 17 C -0.15 -2.91 10.02 22.24 0.22 -2.69 16 18 C -0.05 -0.82 10.03 22.30 0.22 -0.60 16 19 C -0.21 -4.88 9.08 22.34 0.20 -4.67 16 20 C 0.15 5.18 6.27 22.85 0.14 5.33 16 21 O -0.26 -9.76 7.58 -9.91 -0.08 -9.84 16 22 C 0.10 2.56 4.10 22.84 0.09 2.66 16 23 C -0.13 -2.32 9.98 22.34 0.22 -2.10 16 24 C -0.06 -0.44 10.03 22.30 0.22 -0.21 16 25 C -0.10 -0.60 10.02 22.24 0.22 -0.37 16 26 C -0.05 -0.56 9.76 22.53 0.22 -0.34 16 27 C -0.07 -1.60 5.38 -21.20 -0.11 -1.72 16 28 C 0.26 8.29 14.53 88.34 1.28 9.57 16 29 N -0.46 -17.09 18.53 19.00 0.35 -16.74 16 30 H 0.07 4.28 6.07 -2.39 -0.01 4.27 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.40 16.09 6.57 -92.71 -0.61 15.48 16 35 H 0.15 3.59 6.40 -2.91 -0.02 3.57 16 36 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.15 2.82 6.67 -2.91 -0.02 2.80 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 41 H 0.18 -0.44 8.06 -2.91 -0.02 -0.46 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -89.11 370.31 6.18 -82.93 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.47 Total: 19.91 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.17 Total: 2.57 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -1.66 Total: -107.41 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: 0.18 Total: -43.34 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -89.11 6.18 -82.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.308 kcal (2) G-P(sol) polarization free energy of solvation -89.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds