Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47082 * 2 1 4 4 C 1.50701 * 109.46859 * 239.99705 * 2 1 3 5 5 H 1.07995 * 119.99931 * 239.99757 * 4 2 1 6 6 C 1.37880 * 119.99734 * 60.00561 * 4 2 1 7 7 N 1.31509 * 120.00462 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47499 * 89.99671 * 8 6 4 10 10 H 1.48501 * 109.47269 * 209.99718 * 8 6 4 11 11 H 1.48500 * 109.47163 * 329.99602 * 8 6 4 12 12 N 1.46494 * 109.46915 * 120.00041 * 2 1 3 13 13 C 1.34774 * 120.00276 * 275.00143 * 12 2 1 14 14 O 1.21595 * 119.99542 * 359.97438 * 13 12 2 15 15 C 1.47538 * 120.00529 * 179.72768 * 13 12 2 16 16 C 1.39701 * 120.18904 * 0.27310 * 15 13 12 17 17 C 1.37801 * 119.90879 * 179.97438 * 16 15 13 18 18 C 1.38549 * 120.30356 * 0.02562 * 17 16 15 19 19 C 1.38049 * 120.39396 * 0.02562 * 18 17 16 20 20 C 1.38734 * 120.08236 * 359.70100 * 19 18 17 21 21 O 1.35639 * 120.15602 * 180.29992 * 20 19 18 22 22 C 1.35697 * 117.99818 * 5.29283 * 21 20 19 23 23 C 1.38662 * 120.15684 * 265.86533 * 22 21 20 24 24 C 1.38095 * 120.09479 * 180.02562 * 23 22 21 25 25 C 1.38526 * 120.39061 * 359.97438 * 24 23 22 26 26 C 1.37822 * 120.30106 * 0.02800 * 25 24 23 27 27 C 1.39710 * 119.90419 * 359.69536 * 26 25 24 28 28 C 1.43199 * 120.19964 * 180.29740 * 27 26 25 29 29 N 6.62996 * 130.49321 * 63.31506 * 2 1 3 30 30 H 1.08991 * 109.46827 * 299.99954 * 1 2 3 31 31 H 1.09000 * 109.46865 * 60.00241 * 1 2 3 32 32 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00718 * 179.97438 * 7 6 4 34 34 H 0.97008 * 120.00158 * 94.99866 * 12 2 1 35 35 H 1.08001 * 120.04385 * 359.95219 * 16 15 13 36 36 H 1.08000 * 119.84371 * 180.02562 * 17 16 15 37 37 H 1.07998 * 119.80177 * 179.97438 * 18 17 16 38 38 H 1.07992 * 119.96072 * 179.97438 * 19 18 17 39 39 H 1.08009 * 119.95169 * 0.02562 * 23 22 21 40 40 H 1.07994 * 119.80954 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.84785 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.05490 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3224 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8583 1.1616 2.4116 15 6 2.6331 -0.7152 3.5633 16 6 2.9665 -2.0706 3.5051 17 6 3.4203 -2.7157 4.6350 18 6 3.5474 -2.0263 5.8301 19 6 3.2205 -0.6871 5.9020 20 6 2.7673 -0.0202 4.7730 21 8 2.4515 1.2971 4.8405 22 6 2.6965 1.9522 6.0034 23 6 1.6966 2.0789 6.9556 24 6 1.9472 2.7462 8.1384 25 6 3.1962 3.2928 8.3835 26 6 4.2019 3.1765 7.4484 27 6 3.9637 2.4989 6.2500 28 6 5.0060 2.3688 5.2767 29 7 5.8353 2.2643 4.5049 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 2.8683 -2.6122 2.5759 36 1 3.6782 -3.7635 4.5887 37 1 3.9035 -2.5400 6.7108 38 1 3.3218 -0.1566 6.8373 39 1 0.7202 1.6551 6.7720 40 1 1.1649 2.8425 8.8766 41 1 3.3825 3.8132 9.3113 42 1 5.1741 3.6045 7.6434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097047249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = 24.190666 kcal Electronic energy + Delta-G solvation = -27802.730017 eV Core-core repulsion = 23906.915526 eV Total energy + Delta-G solvation = -3895.814490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29388 -39.50026 -38.16638 -37.33746 -36.43815 -34.70846 -32.48665 -31.74914 -31.44529 -30.90670 -29.72880 -28.53646 -25.22031 -24.46030 -23.86247 -23.69948 -21.94107 -21.07701 -19.54844 -19.39943 -18.58373 -17.63811 -16.67397 -16.51610 -16.01064 -15.59041 -15.10793 -14.84250 -14.73745 -14.54920 -14.40011 -14.25430 -13.83345 -13.58089 -13.45845 -13.28469 -12.95637 -12.89533 -12.49383 -12.36347 -12.21274 -12.06586 -11.84682 -11.61878 -11.37111 -11.29598 -11.06731 -10.90848 -10.68416 -10.28295 -10.19688 -9.43666 -9.19484 -9.07656 -9.00187 -8.95872 -8.51292 -8.38117 -7.81734 -6.08311 -4.17447 0.30528 0.73369 0.94569 1.27354 2.58264 2.66329 2.99975 3.26804 3.28888 3.33695 3.36312 3.54666 3.66475 4.05210 4.16108 4.39887 4.41564 4.53178 4.70108 4.71207 4.82226 4.89278 4.94933 5.07506 5.20031 5.23924 5.37485 5.42105 5.61430 5.74472 5.78461 5.82953 5.92267 6.09735 6.17550 6.23485 6.35381 6.66246 6.88069 7.02354 7.20129 7.38407 7.44548 7.51602 7.62329 7.74386 7.97143 8.19424 8.71204 8.83002 9.18488 9.49987 10.97778 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.002991 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.700877 B = 9358.758722 C = 9864.830575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.541 3.459 14 O -0.531 6.531 15 C -0.146 4.146 16 C -0.053 4.053 17 C -0.158 4.158 18 C -0.066 4.066 19 C -0.208 4.208 20 C 0.169 3.831 21 O -0.220 6.220 22 C 0.132 3.868 23 C -0.125 4.125 24 C -0.078 4.078 25 C -0.122 4.122 26 C -0.060 4.060 27 C -0.036 4.036 28 C 0.244 3.756 29 N -0.392 5.392 30 H 0.015 0.985 31 H 0.090 0.910 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -2.000 26.168 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.326 3.674 14 O -0.410 6.410 15 C -0.150 4.150 16 C -0.071 4.071 17 C -0.176 4.176 18 C -0.084 4.084 19 C -0.227 4.227 20 C 0.124 3.876 21 O -0.130 6.130 22 C 0.086 3.914 23 C -0.143 4.143 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.081 4.081 27 C -0.040 4.040 28 C -0.072 4.072 29 N -0.067 5.067 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.802 -1.058 24.631 24.945 hybrid contribution 0.096 -0.877 -0.555 1.042 sum 3.897 -1.935 24.076 24.466 Atomic orbital electron populations 1.22072 0.98390 0.99086 1.00928 1.18746 0.91034 0.94025 0.79770 0.93312 1.21217 1.32408 1.13204 0.90342 0.92105 1.24884 0.94841 0.94949 0.99029 1.69901 1.35913 1.22411 1.23841 0.86450 0.79168 0.79266 0.82232 1.20537 1.21068 1.19855 1.46452 1.65135 1.13391 1.10359 1.17941 0.79407 0.86941 0.83088 1.90786 1.50345 1.15069 1.84774 1.19842 1.07662 0.94352 0.93108 1.21313 0.94440 0.92220 0.99154 1.21037 1.03280 1.00573 0.92722 1.21034 0.96167 0.93195 0.97997 1.21231 1.07426 0.96517 0.97519 1.19131 0.93578 0.81635 0.93243 1.84633 1.77816 1.19572 1.30938 1.18859 0.91547 0.94871 0.86076 1.21422 0.99827 1.00752 0.92315 1.21306 0.97237 0.94904 0.96233 1.21173 0.92839 1.00274 0.99745 1.21131 1.00317 0.95844 0.90804 1.16444 0.89286 1.05232 0.92993 1.25437 0.93415 0.94794 0.93563 1.81326 1.10569 1.06903 1.07855 0.96594 0.89129 0.95488 0.92590 0.78083 0.84406 0.85188 0.85362 0.85068 0.83807 0.84361 0.84375 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 2 C 0.27 7.09 2.56 -69.08 -0.18 6.91 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.61 8.73 -34.44 -0.30 -14.91 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -25.55 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.70 -15.77 5.02 -55.98 -0.28 -16.05 16 13 C 0.54 12.09 7.73 -12.47 -0.10 12.00 16 14 O -0.53 -13.89 14.82 -16.59 -0.25 -14.14 16 15 C -0.15 -2.58 5.89 -104.84 -0.62 -3.20 16 16 C -0.05 -0.73 9.54 -39.20 -0.37 -1.10 16 17 C -0.16 -1.75 10.02 -39.63 -0.40 -2.15 16 18 C -0.07 -0.69 10.03 -39.54 -0.40 -1.08 16 19 C -0.21 -2.55 9.18 -39.47 -0.36 -2.92 16 20 C 0.17 2.73 6.49 -38.68 -0.25 2.48 16 21 O -0.22 -3.79 7.53 -24.05 -0.18 -3.97 16 22 C 0.13 1.68 3.99 -38.69 -0.15 1.53 16 23 C -0.12 -1.14 9.87 -39.48 -0.39 -1.53 16 24 C -0.08 -0.46 10.03 -39.53 -0.40 -0.86 16 25 C -0.12 -0.66 10.02 -39.63 -0.40 -1.05 16 26 C -0.06 -0.45 9.75 -39.18 -0.38 -0.83 16 27 C -0.04 -0.42 5.67 -106.69 -0.61 -1.02 16 28 C 0.24 3.69 14.73 -22.42 -0.33 3.36 16 29 N -0.39 -6.97 18.55 41.90 0.78 -6.19 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.39 7.39 6.57 -40.82 -0.27 7.12 16 35 H 0.14 1.70 6.40 -52.49 -0.34 1.37 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 1.32 6.70 -52.49 -0.35 0.97 16 39 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -36.00 370.88 -8.70 -44.70 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.59 Total: 4.91 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -5.38 Total: -6.08 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 1.12 Total: -47.17 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.43 Total: -18.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.00 -8.70 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.895 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds