Wall clock time and date at job start Tue Mar 31 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47082 * 2 1 4 4 C 1.50701 * 109.46859 * 239.99705 * 2 1 3 5 5 H 1.07995 * 119.99931 * 239.99757 * 4 2 1 6 6 C 1.37880 * 119.99734 * 60.00561 * 4 2 1 7 7 N 1.31509 * 120.00462 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47499 * 89.99671 * 8 6 4 10 10 H 1.48501 * 109.47269 * 209.99718 * 8 6 4 11 11 H 1.48500 * 109.47163 * 329.99602 * 8 6 4 12 12 N 1.46494 * 109.46915 * 120.00041 * 2 1 3 13 13 C 1.34774 * 120.00276 * 275.00143 * 12 2 1 14 14 O 1.21595 * 119.99542 * 359.97438 * 13 12 2 15 15 C 1.47538 * 120.00529 * 179.72768 * 13 12 2 16 16 C 1.39701 * 120.18904 * 0.27310 * 15 13 12 17 17 C 1.37801 * 119.90879 * 179.97438 * 16 15 13 18 18 C 1.38549 * 120.30356 * 0.02562 * 17 16 15 19 19 C 1.38049 * 120.39396 * 0.02562 * 18 17 16 20 20 C 1.38734 * 120.08236 * 359.70100 * 19 18 17 21 21 O 1.35639 * 120.15602 * 180.29992 * 20 19 18 22 22 C 1.35697 * 117.99818 * 5.29283 * 21 20 19 23 23 C 1.38662 * 120.15684 * 265.86533 * 22 21 20 24 24 C 1.38095 * 120.09479 * 180.02562 * 23 22 21 25 25 C 1.38526 * 120.39061 * 359.97438 * 24 23 22 26 26 C 1.37822 * 120.30106 * 0.02800 * 25 24 23 27 27 C 1.39710 * 119.90419 * 359.69536 * 26 25 24 28 28 C 1.43199 * 120.19964 * 180.29740 * 27 26 25 29 29 N 6.62996 * 130.49321 * 63.31506 * 2 1 3 30 30 H 1.08991 * 109.46827 * 299.99954 * 1 2 3 31 31 H 1.09000 * 109.46865 * 60.00241 * 1 2 3 32 32 H 1.08996 * 109.47082 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00718 * 179.97438 * 7 6 4 34 34 H 0.97008 * 120.00158 * 94.99866 * 12 2 1 35 35 H 1.08001 * 120.04385 * 359.95219 * 16 15 13 36 36 H 1.08000 * 119.84371 * 180.02562 * 17 16 15 37 37 H 1.07998 * 119.80177 * 179.97438 * 18 17 16 38 38 H 1.07992 * 119.96072 * 179.97438 * 19 18 17 39 39 H 1.08009 * 119.95169 * 0.02562 * 23 22 21 40 40 H 1.07994 * 119.80954 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.84785 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.05490 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6035 8 14 2.3224 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8583 1.1616 2.4116 15 6 2.6331 -0.7152 3.5633 16 6 2.9665 -2.0706 3.5051 17 6 3.4203 -2.7157 4.6350 18 6 3.5474 -2.0263 5.8301 19 6 3.2205 -0.6871 5.9020 20 6 2.7673 -0.0202 4.7730 21 8 2.4515 1.2971 4.8405 22 6 2.6965 1.9522 6.0034 23 6 1.6966 2.0789 6.9556 24 6 1.9472 2.7462 8.1384 25 6 3.1962 3.2928 8.3835 26 6 4.2019 3.1765 7.4484 27 6 3.9637 2.4989 6.2500 28 6 5.0060 2.3688 5.2767 29 7 5.8353 2.2643 4.5049 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.7089 1.1613 -3.4844 34 1 2.2490 -1.6318 1.1526 35 1 2.8683 -2.6122 2.5759 36 1 3.6782 -3.7635 4.5887 37 1 3.9035 -2.5400 6.7108 38 1 3.3218 -0.1566 6.8373 39 1 0.7202 1.6551 6.7720 40 1 1.1649 2.8425 8.8766 41 1 3.3825 3.8132 9.3113 42 1 5.1741 3.6045 7.6434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097047249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:01 Heat of formation + Delta-G solvation = 1.757702 kcal Electronic energy + Delta-G solvation = -27803.702783 eV Core-core repulsion = 23906.915526 eV Total energy + Delta-G solvation = -3896.787257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27563 -40.75727 -39.44482 -38.35598 -37.57902 -36.72995 -34.44038 -32.68384 -32.45548 -31.83898 -30.77310 -30.27034 -27.39931 -25.30402 -25.17286 -24.46069 -23.04283 -22.59007 -21.26300 -20.43491 -19.69827 -18.95642 -17.82692 -17.68157 -17.44549 -17.04107 -16.32342 -16.12549 -15.92793 -15.77745 -15.61138 -15.33263 -15.07911 -14.79018 -14.65066 -14.50892 -14.33922 -14.28036 -13.99167 -13.73604 -13.27672 -13.08980 -13.02536 -12.88499 -12.85273 -12.76312 -12.71975 -12.34317 -12.26459 -12.17489 -12.04531 -11.16316 -10.80664 -10.62816 -10.18788 -10.09354 -9.85688 -9.79215 -9.37611 -8.21658 -6.40224 -0.44882 -0.18170 0.12032 0.29045 1.40755 1.42888 1.46330 1.53398 1.81903 1.95957 2.05226 2.30397 2.54698 2.72654 2.77988 2.81667 3.08354 3.68322 3.74265 3.78066 3.98983 4.07233 4.11439 4.26608 4.32544 4.34964 4.37186 4.60002 4.68340 4.79543 4.85831 4.87127 5.03137 5.08308 5.17847 5.24207 5.26482 5.36967 5.37517 5.39350 5.55136 5.62606 5.66558 5.80174 5.86264 6.04027 6.29461 6.48975 6.66579 6.90632 7.26861 7.49004 8.85242 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.002991 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.700877 B = 9358.758722 C = 9864.830575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.273 3.727 3 H -0.009 1.009 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.977 3.023 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.265 1.265 12 N -0.702 5.702 13 C 0.536 3.464 14 O -0.585 6.585 15 C -0.192 4.192 16 C -0.056 4.056 17 C -0.151 4.151 18 C -0.046 4.046 19 C -0.207 4.207 20 C 0.152 3.848 21 O -0.261 6.261 22 C 0.097 3.903 23 C -0.133 4.133 24 C -0.055 4.055 25 C -0.103 4.103 26 C -0.048 4.048 27 C -0.067 4.067 28 C 0.264 3.736 29 N -0.462 5.462 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.267 0.733 34 H 0.402 0.598 35 H 0.146 0.854 36 H 0.170 0.830 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -4.112 30.119 30.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.009 0.991 4 C -0.588 4.588 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.352 5.352 13 C 0.324 3.676 14 O -0.467 6.467 15 C -0.195 4.195 16 C -0.074 4.074 17 C -0.168 4.168 18 C -0.064 4.064 19 C -0.225 4.225 20 C 0.108 3.892 21 O -0.172 6.172 22 C 0.053 3.947 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.120 4.120 26 C -0.068 4.068 27 C -0.071 4.071 28 C -0.050 4.050 29 N -0.138 5.138 30 H 0.027 0.973 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.196 0.804 41 H 0.201 0.799 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.432 -3.212 28.613 29.131 hybrid contribution -0.142 -0.141 -1.528 1.541 sum 4.290 -3.353 27.085 27.627 Atomic orbital electron populations 1.21872 0.97982 0.99583 0.99473 1.18345 0.91337 0.91604 0.81764 0.99126 1.21529 1.32841 1.13665 0.90744 0.90846 1.25867 0.94792 0.95582 1.02465 1.70061 1.36936 1.23906 1.24725 0.85274 0.78998 0.78075 0.77566 1.19063 1.21115 1.18934 1.46181 1.65425 1.14035 1.09514 1.18739 0.78073 0.86535 0.84223 1.90731 1.52653 1.17506 1.85777 1.19607 1.12032 0.96170 0.91732 1.21508 0.94296 0.90688 1.00956 1.21489 1.01482 1.02246 0.91608 1.21648 0.93154 0.92259 0.99319 1.21523 1.06560 0.97415 0.96999 1.19477 0.93964 0.81915 0.93893 1.84585 1.78280 1.20460 1.33903 1.19279 0.93091 0.96202 0.86155 1.21557 0.98919 1.01708 0.92920 1.21794 0.98483 0.92027 0.95030 1.21700 0.91478 0.98508 1.00321 1.21494 1.02091 0.94096 0.89111 1.16690 0.88137 1.08177 0.94122 1.26194 0.92944 0.92881 0.92968 1.81304 1.13040 1.09661 1.09794 0.97265 0.91236 0.93770 0.92432 0.76169 0.83613 0.81230 0.80706 0.82869 0.83923 0.80405 0.79853 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 2 C 0.27 15.56 2.56 44.25 0.11 15.67 16 3 H -0.01 -0.62 7.58 -2.39 -0.02 -0.64 16 4 C -0.55 -31.12 8.73 25.60 0.22 -30.89 16 5 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -55.31 11.32 21.45 0.24 -55.07 16 8 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 N -0.70 -33.54 5.02 -449.27 -2.25 -35.79 16 13 C 0.54 26.06 7.73 86.70 0.67 26.73 16 14 O -0.58 -33.84 14.82 16.90 0.25 -33.59 16 15 C -0.19 -7.18 5.89 -20.00 -0.12 -7.30 16 16 C -0.06 -1.54 9.54 22.52 0.21 -1.32 16 17 C -0.15 -2.87 10.02 22.24 0.22 -2.65 16 18 C -0.05 -0.80 10.03 22.30 0.22 -0.57 16 19 C -0.21 -4.79 9.18 22.34 0.21 -4.59 16 20 C 0.15 5.15 6.49 22.86 0.15 5.29 16 21 O -0.26 -9.76 7.53 -9.80 -0.07 -9.84 16 22 C 0.10 2.55 3.99 22.85 0.09 2.64 16 23 C -0.13 -2.26 9.87 22.34 0.22 -2.04 16 24 C -0.06 -0.41 10.03 22.30 0.22 -0.19 16 25 C -0.10 -0.59 10.02 22.24 0.22 -0.36 16 26 C -0.05 -0.58 9.75 22.53 0.22 -0.36 16 27 C -0.07 -1.57 5.67 -21.20 -0.12 -1.69 16 28 C 0.26 8.51 14.73 88.31 1.30 9.81 16 29 N -0.46 -17.78 18.55 19.02 0.35 -17.43 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 32 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.40 16.10 6.57 -92.70 -0.61 15.49 16 35 H 0.15 3.57 6.40 -2.91 -0.02 3.55 16 36 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.15 2.77 6.70 -2.91 -0.02 2.75 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 41 H 0.18 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -90.15 370.88 6.19 -83.96 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.47 Total: 18.94 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.18 Total: 2.88 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -1.66 Total: -108.29 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: 0.18 Total: -43.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -90.15 6.19 -83.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.718 kcal (2) G-P(sol) polarization free energy of solvation -90.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds