Wall clock time and date at job start Tue Mar 31 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47018 * 56.76313 * 3 2 1 5 5 C 1.50693 * 109.47541 * 176.76430 * 3 2 1 6 6 H 1.07998 * 120.00632 * 119.78715 * 5 3 2 7 7 C 1.37880 * 119.99817 * 299.79066 * 5 3 2 8 8 N 1.31522 * 119.99748 * 154.33646 * 7 5 3 9 9 Si 1.86794 * 120.00153 * 334.33439 * 7 5 3 10 10 H 1.48498 * 109.47418 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47245 * 300.00118 * 9 7 5 12 12 H 1.48504 * 109.46826 * 60.00347 * 9 7 5 13 13 N 1.46506 * 109.46978 * 296.76378 * 3 2 1 14 14 C 1.34782 * 119.99920 * 84.99827 * 13 3 2 15 15 O 1.21589 * 119.99731 * 0.02562 * 14 13 3 16 16 N 1.34774 * 119.99944 * 179.97438 * 14 13 3 17 17 C 1.40105 * 120.00172 * 184.11734 * 16 14 13 18 18 C 1.38460 * 120.00386 * 32.06476 * 17 16 14 19 19 C 1.39581 * 119.80682 * 179.75063 * 18 17 16 20 20 C 1.47733 * 120.09194 * 180.27883 * 19 18 17 21 21 O 1.21562 * 119.99865 * 324.69245 * 20 19 18 22 22 N 1.34774 * 119.99884 * 144.69902 * 20 19 18 23 23 C 1.46500 * 119.99763 * 184.97212 * 22 20 19 24 24 C 1.46496 * 120.00350 * 4.97783 * 22 20 19 25 25 C 1.39660 * 119.81375 * 0.49853 * 19 18 17 26 26 C 1.37903 * 120.01361 * 359.77600 * 25 19 18 27 27 C 1.38496 * 120.19274 * 359.97438 * 26 25 19 28 28 F 1.35099 * 119.90767 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.46897 * 60.00013 * 1 2 3 30 30 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47113 * 300.00464 * 1 2 3 32 32 H 1.08999 * 109.47113 * 239.99536 * 2 1 3 33 33 H 1.09004 * 109.46759 * 119.99449 * 2 1 3 34 34 H 0.96994 * 120.00329 * 354.97845 * 8 7 5 35 35 H 0.96995 * 119.99640 * 265.00048 * 13 3 2 36 36 H 0.96998 * 120.00143 * 4.12508 * 16 14 13 37 37 H 1.08002 * 120.09723 * 359.97438 * 18 17 16 38 38 H 1.09000 * 109.47542 * 0.02562 * 23 22 20 39 39 H 1.09003 * 109.46890 * 120.00112 * 23 22 20 40 40 H 1.09003 * 109.47289 * 240.00402 * 23 22 20 41 41 H 1.09001 * 109.47351 * 89.06079 * 24 22 20 42 42 H 1.09005 * 109.47327 * 209.06179 * 24 22 20 43 43 H 1.09001 * 109.47041 * 329.06115 * 24 22 20 44 44 H 1.08001 * 119.98889 * 179.75295 * 25 19 18 45 45 H 1.07998 * 119.90175 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6301 1.9728 0.8596 5 6 3.5448 1.4433 0.0802 6 1 4.1276 1.8929 -0.7102 7 6 4.1778 0.8700 1.1627 8 7 5.4042 0.4111 1.0400 9 14 3.2935 0.7453 2.8033 10 1 4.1838 0.0935 3.7972 11 1 2.9346 2.1061 3.2770 12 1 2.0590 -0.0637 2.6399 13 7 1.6164 2.1102 -1.2333 14 6 0.3963 2.6781 -1.3073 15 8 -0.3526 2.6366 -0.3502 16 7 0.0067 3.2928 -2.4416 17 6 -1.2256 3.9575 -2.4906 18 6 -1.7298 4.5659 -1.3536 19 6 -2.9555 5.2314 -1.4083 20 6 -3.4965 5.8880 -0.2005 21 8 -3.3157 5.3910 0.8940 22 7 -4.1904 7.0379 -0.3122 23 6 -4.6330 7.7462 0.8914 24 6 -4.5023 7.5796 -1.6371 25 6 -3.6713 5.2709 -2.6069 26 6 -3.1648 4.6575 -3.7334 27 6 -1.9462 4.0015 -3.6809 28 9 -1.4556 3.4021 -4.7878 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8368 0.4092 0.1719 35 1 2.2140 2.1436 -1.9966 36 1 0.5795 3.2750 -3.2242 37 1 -1.1746 4.5287 -0.4280 38 1 -4.3106 7.1965 1.7757 39 1 -4.1970 8.7452 0.9060 40 1 -5.7202 7.8242 0.8880 41 1 -5.4510 7.1693 -1.9833 42 1 -4.5762 8.6655 -1.5776 43 1 -3.7118 7.3070 -2.3364 44 1 -4.6219 5.7816 -2.6514 45 1 -3.7200 4.6888 -4.6592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:36 Heat of formation + Delta-G solvation = -60.405325 kcal Electronic energy + Delta-G solvation = -29584.558392 eV Core-core repulsion = 25324.713503 eV Total energy + Delta-G solvation = -4259.844889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.10938 -40.79801 -39.94525 -38.20066 -35.98726 -35.62002 -34.41491 -32.54858 -31.51478 -31.16894 -29.85549 -28.07828 -27.04071 -26.65284 -23.64408 -23.18252 -22.30747 -21.07701 -20.08340 -19.73158 -18.64937 -18.00212 -17.75150 -17.22923 -16.74689 -16.18682 -16.18135 -15.88482 -15.54293 -15.09502 -14.82732 -14.42563 -14.07917 -14.01952 -13.62146 -13.35230 -13.26906 -13.14036 -13.01620 -12.80088 -12.60542 -12.46958 -12.42783 -12.29650 -12.02588 -11.78432 -11.56771 -10.87568 -10.67808 -10.45325 -10.39658 -10.10778 -9.87965 -9.72962 -9.50780 -9.17222 -9.09564 -8.92206 -8.33114 -8.26461 -8.00891 -6.62836 -4.21511 0.55533 1.03275 2.46845 2.68122 2.89547 3.33760 3.42028 3.48470 3.63431 3.71068 3.94558 4.19962 4.43495 4.44207 4.64964 4.66961 4.83209 4.93148 5.03009 5.07581 5.08571 5.23274 5.27952 5.32494 5.53567 5.61362 5.76120 5.93758 6.09665 6.10479 6.12695 6.13476 6.27636 6.31501 6.65069 6.77984 6.83625 6.93440 7.00604 7.01836 7.12229 7.39532 7.47563 7.74503 7.94378 8.23461 8.53652 8.70958 9.02596 9.43236 10.75660 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.003243 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.102716 B = 8631.296567 C =10015.296003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.267 3.733 4 H 0.042 0.958 5 C -0.630 4.630 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.886 5.886 9 Si 1.028 2.972 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.708 5.708 14 C 0.692 3.308 15 O -0.569 6.569 16 N -0.692 5.692 17 C 0.151 3.849 18 C -0.042 4.042 19 C -0.123 4.123 20 C 0.560 3.440 21 O -0.518 6.518 22 N -0.621 5.621 23 C 0.080 3.920 24 C 0.068 3.932 25 C -0.100 4.100 26 C -0.140 4.140 27 C 0.082 3.918 28 F -0.135 7.135 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.271 0.729 35 H 0.391 0.609 36 H 0.407 0.593 37 H 0.162 0.838 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 14.353 -11.396 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.164 3.836 4 H 0.060 0.940 5 C -0.668 4.668 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.855 3.145 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.195 1.195 13 N -0.358 5.358 14 C 0.392 3.608 15 O -0.446 6.446 16 N -0.340 5.340 17 C 0.053 3.947 18 C -0.063 4.063 19 C -0.127 4.127 20 C 0.349 3.651 21 O -0.394 6.394 22 N -0.355 5.355 23 C -0.062 4.062 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.159 4.159 27 C 0.059 3.941 28 F -0.113 7.113 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.224 0.776 36 H 0.243 0.757 37 H 0.179 0.821 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.163 0.837 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.192 13.475 -8.290 25.652 hybrid contribution 0.466 0.388 -2.837 2.901 sum -19.726 13.863 -11.127 26.554 Atomic orbital electron populations 1.21857 0.97253 0.98796 1.01974 1.22344 0.93886 0.99732 1.01694 1.18966 0.95129 0.87995 0.81554 0.94042 1.21969 0.89467 1.44635 1.10694 0.91908 1.25602 0.96087 0.91576 1.02592 1.70878 1.14995 1.37569 1.28259 0.84311 0.76124 0.77746 0.76330 1.20869 1.20567 1.19506 1.45567 1.13303 1.57974 1.18996 1.16119 0.83540 0.78755 0.82370 1.90950 1.53420 1.64382 1.35894 1.42768 1.18885 1.56326 1.16013 1.17370 0.87691 0.96422 0.93257 1.21300 0.94899 0.91340 0.98788 1.19693 0.96868 1.02468 0.93715 1.18288 0.77756 0.80271 0.88792 1.90849 1.57591 1.63175 1.27763 1.47570 1.56105 1.24120 1.07728 1.21706 0.99462 0.96747 0.88275 1.22280 1.01235 0.99663 0.84329 1.21464 1.00489 0.99100 0.90838 1.20828 0.94591 1.00131 1.00362 1.17682 0.93889 0.99747 0.82754 1.91492 1.87572 1.81500 1.50751 0.93626 0.95171 0.92726 0.93114 0.91427 0.91884 0.77619 0.75699 0.82059 0.89276 0.92089 0.92177 0.92132 0.90991 0.89595 0.83671 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.48 37.16 0.32 -2.67 16 2 C -0.14 -3.14 5.30 -26.73 -0.14 -3.28 16 3 C 0.27 6.38 1.86 -69.08 -0.13 6.25 16 4 H 0.04 1.09 6.43 -51.93 -0.33 0.75 16 5 C -0.63 -16.89 8.98 -34.44 -0.31 -17.20 16 6 H 0.06 1.75 7.98 -52.49 -0.42 1.33 16 7 C 0.05 1.39 5.16 -17.82 -0.09 1.30 16 8 N -0.89 -26.05 13.70 55.43 0.76 -25.29 16 9 Si 1.03 25.08 26.51 -169.99 -4.51 20.57 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.22 5.83 56.52 0.33 -5.89 16 13 N -0.71 -14.17 5.01 -59.81 -0.30 -14.46 16 14 C 0.69 13.29 6.82 -86.92 -0.59 12.70 16 15 O -0.57 -12.74 11.02 5.29 0.06 -12.68 16 16 N -0.69 -10.40 5.26 -14.20 -0.07 -10.48 16 17 C 0.15 2.16 6.31 -83.63 -0.53 1.63 16 18 C -0.04 -0.65 8.22 -39.00 -0.32 -0.97 16 19 C -0.12 -1.58 5.36 -104.99 -0.56 -2.14 16 20 C 0.56 7.70 7.39 -12.38 -0.09 7.61 16 21 O -0.52 -9.46 16.17 5.31 0.09 -9.37 16 22 N -0.62 -5.95 3.27 -190.69 -0.62 -6.57 16 23 C 0.08 0.64 10.68 59.85 0.64 1.28 16 24 C 0.07 0.36 8.86 59.84 0.53 0.89 16 25 C -0.10 -0.89 7.46 -39.17 -0.29 -1.19 16 26 C -0.14 -1.26 10.00 -39.61 -0.40 -1.65 16 27 C 0.08 0.97 7.31 -39.13 -0.29 0.68 16 28 F -0.13 -1.59 16.91 2.25 0.04 -1.55 16 29 H 0.04 0.96 5.69 -51.93 -0.30 0.66 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.22 7.74 -51.93 -0.40 0.81 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.61 4.87 -51.93 -0.25 1.35 16 34 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 35 H 0.39 6.90 8.56 -40.82 -0.35 6.55 16 36 H 0.41 4.96 8.62 -40.82 -0.35 4.61 16 37 H 0.16 3.05 6.21 -52.49 -0.33 2.72 16 38 H 0.09 0.91 6.91 -51.93 -0.36 0.55 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.22 7.12 -51.93 -0.37 -0.15 16 42 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 43 H 0.09 0.46 5.33 -51.93 -0.28 0.19 16 44 H 0.15 0.84 5.01 -52.49 -0.26 0.58 16 45 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -34.21 363.96 -7.09 -41.30 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.75 Total: 9.81 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.26 Total: 3.25 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.24 Total: -56.81 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.14 Total: -22.06 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.51 Total: 20.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.21 -7.09 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.106 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds