Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.09001 * 109.47018 * 56.76313 * 3 2 1 5 5 C 1.50693 * 109.47541 * 176.76430 * 3 2 1 6 6 H 1.07998 * 120.00632 * 119.78715 * 5 3 2 7 7 C 1.37880 * 119.99817 * 299.79066 * 5 3 2 8 8 N 1.31522 * 119.99748 * 154.33646 * 7 5 3 9 9 Si 1.86794 * 120.00153 * 334.33439 * 7 5 3 10 10 H 1.48498 * 109.47418 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47245 * 300.00118 * 9 7 5 12 12 H 1.48504 * 109.46826 * 60.00347 * 9 7 5 13 13 N 1.46506 * 109.46978 * 296.76378 * 3 2 1 14 14 C 1.34782 * 119.99920 * 84.99827 * 13 3 2 15 15 O 1.21589 * 119.99731 * 0.02562 * 14 13 3 16 16 N 1.34774 * 119.99944 * 179.97438 * 14 13 3 17 17 C 1.40105 * 120.00172 * 184.11734 * 16 14 13 18 18 C 1.38460 * 120.00386 * 32.06476 * 17 16 14 19 19 C 1.39581 * 119.80682 * 179.75063 * 18 17 16 20 20 C 1.47733 * 120.09194 * 180.27883 * 19 18 17 21 21 O 1.21562 * 119.99865 * 324.69245 * 20 19 18 22 22 N 1.34774 * 119.99884 * 144.69902 * 20 19 18 23 23 C 1.46500 * 119.99763 * 184.97212 * 22 20 19 24 24 C 1.46496 * 120.00350 * 4.97783 * 22 20 19 25 25 C 1.39660 * 119.81375 * 0.49853 * 19 18 17 26 26 C 1.37903 * 120.01361 * 359.77600 * 25 19 18 27 27 C 1.38496 * 120.19274 * 359.97438 * 26 25 19 28 28 F 1.35099 * 119.90767 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.46897 * 60.00013 * 1 2 3 30 30 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47113 * 300.00464 * 1 2 3 32 32 H 1.08999 * 109.47113 * 239.99536 * 2 1 3 33 33 H 1.09004 * 109.46759 * 119.99449 * 2 1 3 34 34 H 0.96994 * 120.00329 * 354.97845 * 8 7 5 35 35 H 0.96995 * 119.99640 * 265.00048 * 13 3 2 36 36 H 0.96998 * 120.00143 * 4.12508 * 16 14 13 37 37 H 1.08002 * 120.09723 * 359.97438 * 18 17 16 38 38 H 1.09000 * 109.47542 * 0.02562 * 23 22 20 39 39 H 1.09003 * 109.46890 * 120.00112 * 23 22 20 40 40 H 1.09003 * 109.47289 * 240.00402 * 23 22 20 41 41 H 1.09001 * 109.47351 * 89.06079 * 24 22 20 42 42 H 1.09005 * 109.47327 * 209.06179 * 24 22 20 43 43 H 1.09001 * 109.47041 * 329.06115 * 24 22 20 44 44 H 1.08001 * 119.98889 * 179.75295 * 25 19 18 45 45 H 1.07998 * 119.90175 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6301 1.9728 0.8596 5 6 3.5448 1.4433 0.0802 6 1 4.1276 1.8929 -0.7102 7 6 4.1778 0.8700 1.1627 8 7 5.4042 0.4111 1.0400 9 14 3.2935 0.7453 2.8033 10 1 4.1838 0.0935 3.7972 11 1 2.9346 2.1061 3.2770 12 1 2.0590 -0.0637 2.6399 13 7 1.6164 2.1102 -1.2333 14 6 0.3963 2.6781 -1.3073 15 8 -0.3526 2.6366 -0.3502 16 7 0.0067 3.2928 -2.4416 17 6 -1.2256 3.9575 -2.4906 18 6 -1.7298 4.5659 -1.3536 19 6 -2.9555 5.2314 -1.4083 20 6 -3.4965 5.8880 -0.2005 21 8 -3.3157 5.3910 0.8940 22 7 -4.1904 7.0379 -0.3122 23 6 -4.6330 7.7462 0.8914 24 6 -4.5023 7.5796 -1.6371 25 6 -3.6713 5.2709 -2.6069 26 6 -3.1648 4.6575 -3.7334 27 6 -1.9462 4.0015 -3.6809 28 9 -1.4556 3.4021 -4.7878 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8368 0.4092 0.1719 35 1 2.2140 2.1436 -1.9966 36 1 0.5795 3.2750 -3.2242 37 1 -1.1746 4.5287 -0.4280 38 1 -4.3106 7.1965 1.7757 39 1 -4.1970 8.7452 0.9060 40 1 -5.7202 7.8242 0.8880 41 1 -5.4510 7.1693 -1.9833 42 1 -4.5762 8.6655 -1.5776 43 1 -3.7118 7.3070 -2.3364 44 1 -4.6219 5.7816 -2.6514 45 1 -3.7200 4.6888 -4.6592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = -85.951119 kcal Electronic energy + Delta-G solvation = -29585.666141 eV Core-core repulsion = 25324.713503 eV Total energy + Delta-G solvation = -4260.952638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.03728 -41.93663 -41.18466 -39.32414 -37.42185 -36.72572 -35.80930 -34.55395 -33.20109 -32.08090 -30.97801 -29.15314 -28.52790 -27.42404 -24.83630 -24.30803 -23.95951 -22.51647 -21.50961 -21.01729 -20.30990 -19.27946 -18.77190 -18.62233 -17.85296 -17.39274 -17.08840 -16.93093 -16.68913 -16.39444 -16.19930 -15.63637 -15.21621 -15.15840 -15.01595 -14.71261 -14.55122 -14.41556 -14.33759 -14.05526 -13.90017 -13.70497 -13.58701 -13.31908 -13.19364 -12.88849 -12.72877 -12.56745 -12.41304 -12.28067 -11.84604 -11.64714 -11.42135 -11.26224 -11.13351 -11.09341 -10.43835 -10.04006 -9.94634 -9.69142 -9.21608 -8.84640 -6.43260 -0.39232 0.09177 1.41305 1.44998 1.48258 1.61044 1.69880 1.93389 2.06297 2.39841 2.55454 2.90613 3.00054 3.21625 3.40167 3.63669 3.96380 4.08245 4.26478 4.28005 4.33143 4.35374 4.42751 4.50164 4.52424 4.70565 4.76540 4.81663 4.89059 4.92164 4.94158 4.98450 5.04989 5.13153 5.16479 5.23014 5.26309 5.46609 5.52286 5.54655 5.61971 5.75313 5.98049 6.01722 6.21642 6.51609 7.00883 7.01699 7.24415 7.50220 8.53146 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.003243 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.102716 B = 8631.296567 C =10015.296003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 C 0.274 3.726 4 H 0.018 0.982 5 C -0.627 4.627 6 H 0.044 0.956 7 C 0.011 3.989 8 N -0.913 5.913 9 Si 1.058 2.942 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.250 1.250 13 N -0.709 5.709 14 C 0.694 3.306 15 O -0.603 6.603 16 N -0.679 5.679 17 C 0.123 3.877 18 C -0.068 4.068 19 C -0.132 4.132 20 C 0.549 3.451 21 O -0.584 6.584 22 N -0.612 5.612 23 C 0.075 3.925 24 C 0.055 3.945 25 C -0.071 4.071 26 C -0.119 4.119 27 C 0.088 3.912 28 F -0.133 7.133 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.263 0.737 35 H 0.402 0.598 36 H 0.421 0.579 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.190 0.810 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.602 15.788 -14.175 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 C 0.169 3.831 4 H 0.036 0.964 5 C -0.665 4.665 6 H 0.062 0.938 7 C -0.193 4.193 8 N -0.546 5.546 9 Si 0.881 3.119 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.175 1.175 13 N -0.361 5.361 14 C 0.395 3.605 15 O -0.482 6.482 16 N -0.328 5.328 17 C 0.026 3.974 18 C -0.090 4.090 19 C -0.136 4.136 20 C 0.339 3.661 21 O -0.464 6.464 22 N -0.344 5.344 23 C -0.067 4.067 24 C -0.086 4.086 25 C -0.090 4.090 26 C -0.137 4.137 27 C 0.065 3.935 28 F -0.111 7.111 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.237 0.763 36 H 0.259 0.741 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.206 0.794 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -23.848 14.983 -11.169 30.298 hybrid contribution 1.481 0.138 -2.105 2.578 sum -22.367 15.121 -13.274 30.085 Atomic orbital electron populations 1.21710 0.95775 1.00081 1.01049 1.22227 0.95069 0.98458 1.01424 1.18612 0.93076 0.88972 0.82458 0.96439 1.22119 0.91077 1.43416 1.09844 0.93767 1.26585 0.96125 0.91320 1.05230 1.70961 1.16033 1.39810 1.27839 0.83896 0.76183 0.78184 0.73625 1.20389 1.20408 1.17452 1.45240 1.14182 1.58434 1.18286 1.16118 0.82794 0.78565 0.83034 1.90942 1.54254 1.65472 1.37517 1.42423 1.19722 1.55633 1.15028 1.17500 0.87847 0.97725 0.94307 1.20963 0.96444 0.94002 0.97614 1.19739 0.96303 1.02555 0.95045 1.18603 0.77987 0.81311 0.88223 1.90813 1.60349 1.65340 1.29938 1.47751 1.54066 1.22510 1.10055 1.21860 1.01245 0.96891 0.86693 1.22657 1.02554 1.01444 0.81931 1.21912 1.00966 0.97288 0.88805 1.21345 0.92998 0.97457 1.01931 1.17822 0.94427 0.99638 0.81609 1.91506 1.87735 1.81533 1.50333 0.93851 0.92614 0.94401 0.92612 0.92385 0.92782 0.76343 0.74122 0.86761 0.92480 0.89892 0.89405 0.89130 0.88450 0.89354 0.79352 0.79240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.48 71.98 0.61 -4.80 16 2 C -0.13 -6.06 5.30 30.59 0.16 -5.90 16 3 C 0.27 13.41 1.86 44.24 0.08 13.49 16 4 H 0.02 0.96 6.43 -2.39 -0.02 0.95 16 5 C -0.63 -34.54 8.98 25.60 0.23 -34.31 16 6 H 0.04 2.55 7.98 -2.91 -0.02 2.53 16 7 C 0.01 0.62 5.16 84.65 0.44 1.05 16 8 N -0.91 -54.97 13.70 21.45 0.29 -54.67 16 9 Si 1.06 51.51 26.51 68.60 1.82 53.33 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.25 -11.32 5.83 99.48 0.58 -10.74 16 13 N -0.71 -29.18 5.01 -461.40 -2.31 -31.49 16 14 C 0.69 27.62 6.82 179.05 1.22 28.85 16 15 O -0.60 -28.39 11.02 -4.00 -0.04 -28.43 16 16 N -0.68 -20.70 5.26 -317.10 -1.67 -22.37 16 17 C 0.12 3.50 6.31 38.10 0.24 3.74 16 18 C -0.07 -2.21 8.22 22.65 0.19 -2.02 16 19 C -0.13 -3.28 5.36 -20.10 -0.11 -3.39 16 20 C 0.55 15.24 7.39 86.75 0.64 15.88 16 21 O -0.58 -22.90 16.17 -3.91 -0.06 -22.97 16 22 N -0.61 -10.51 3.27 -875.48 -2.87 -13.37 16 23 C 0.07 1.09 10.68 127.77 1.36 2.46 16 24 C 0.05 0.33 8.86 127.77 1.13 1.46 16 25 C -0.07 -0.97 7.46 22.53 0.17 -0.80 16 26 C -0.12 -1.54 10.00 22.25 0.22 -1.31 16 27 C 0.09 1.83 7.31 22.56 0.16 1.99 16 28 F -0.13 -2.73 16.91 44.97 0.76 -1.97 16 29 H 0.04 1.82 5.69 -2.38 -0.01 1.81 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.70 7.74 -2.39 -0.02 1.68 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.74 4.87 -2.38 -0.01 2.73 16 34 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 35 H 0.40 14.50 8.56 -92.71 -0.79 13.70 16 36 H 0.42 10.13 8.62 -92.71 -0.80 9.33 16 37 H 0.11 4.79 6.21 -2.91 -0.02 4.77 16 38 H 0.06 1.23 6.91 -2.39 -0.02 1.21 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.09 7.12 -2.39 -0.02 0.07 16 42 H 0.10 0.19 8.07 -2.38 -0.02 0.17 16 43 H 0.09 0.53 5.33 -2.39 -0.01 0.51 16 44 H 0.19 0.96 5.01 -2.91 -0.01 0.94 16 45 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -81.34 363.96 1.99 -79.35 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.69 Total: 26.23 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.75 Total: 16.38 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -6.55 Total: -121.91 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.11 Total: -51.40 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.76 Total: -1.97 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 1.82 Total: 53.33 kcal Total: -81.34 1.99 -79.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.602 kcal (2) G-P(sol) polarization free energy of solvation -81.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds