Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 H 1.09004 * 109.47030 * 303.51605 * 3 2 1 5 5 C 1.50696 * 109.47080 * 183.51782 * 3 2 1 6 6 H 1.07998 * 120.00269 * 274.99703 * 5 3 2 7 7 C 1.37879 * 120.00067 * 94.99955 * 5 3 2 8 8 N 1.31518 * 120.00000 * 184.89546 * 7 5 3 9 9 Si 1.86800 * 120.00128 * 4.89824 * 7 5 3 10 10 H 1.48494 * 109.47285 * 84.84057 * 9 7 5 11 11 H 1.48505 * 109.47097 * 204.84397 * 9 7 5 12 12 H 1.48507 * 109.46973 * 324.83946 * 9 7 5 13 13 N 1.46494 * 109.47094 * 63.51574 * 3 2 1 14 14 C 1.34780 * 120.00048 * 274.99906 * 13 3 2 15 15 O 1.21589 * 119.99794 * 359.97438 * 14 13 3 16 16 N 1.34773 * 119.99888 * 180.02562 * 14 13 3 17 17 C 1.40108 * 119.99666 * 184.05104 * 16 14 13 18 18 C 1.38458 * 120.00627 * 333.48140 * 17 16 14 19 19 C 1.39581 * 119.80497 * 179.74980 * 18 17 16 20 20 C 1.47732 * 120.09034 * 180.25389 * 19 18 17 21 21 O 1.21562 * 120.00007 * 355.87850 * 20 19 18 22 22 N 1.34776 * 119.99626 * 175.88210 * 20 19 18 23 23 C 1.46509 * 119.99683 * 187.74258 * 22 20 19 24 24 C 1.46498 * 120.00753 * 7.74072 * 22 20 19 25 25 C 1.39658 * 119.81815 * 0.52994 * 19 18 17 26 26 C 1.37905 * 120.00970 * 359.74906 * 25 19 18 27 27 C 1.38497 * 120.19632 * 359.97438 * 26 25 19 28 28 F 1.35108 * 119.90898 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47199 * 60.00420 * 1 2 3 30 30 H 1.08994 * 109.47521 * 300.00354 * 1 2 3 31 31 H 1.09004 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47199 * 119.99580 * 2 1 3 33 33 H 1.09004 * 109.47118 * 239.99314 * 2 1 3 34 34 H 0.96999 * 120.00063 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99923 * 95.00596 * 13 3 2 36 36 H 0.96997 * 120.00003 * 4.04180 * 16 14 13 37 37 H 1.07991 * 120.09557 * 0.02562 * 18 17 16 38 38 H 1.09000 * 109.46939 * 89.99854 * 23 22 20 39 39 H 1.08999 * 109.47197 * 209.99873 * 23 22 20 40 40 H 1.08996 * 109.46886 * 329.99694 * 23 22 20 41 41 H 1.09000 * 109.46967 * 54.72456 * 24 22 20 42 42 H 1.09000 * 109.47640 * 174.72343 * 24 22 20 43 43 H 1.09003 * 109.47085 * 294.73174 * 24 22 20 44 44 H 1.07996 * 119.99522 * 179.72185 * 25 19 18 45 45 H 1.08002 * 119.90356 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9742 -0.8568 5 6 3.5444 1.4433 -0.0872 6 1 4.1374 1.3431 0.8099 7 6 4.1639 1.5721 -1.3122 8 7 5.4726 1.4764 -1.4006 9 14 3.1445 1.8825 -2.8464 10 1 2.8835 3.3381 -2.9812 11 1 3.8857 1.3998 -4.0393 12 1 1.8537 1.1561 -2.7383 13 7 1.6220 2.1082 1.2362 14 6 0.4023 2.6760 1.3167 15 8 -0.3509 2.6361 0.3631 16 7 0.0181 3.2889 2.4539 17 6 -1.2797 3.8045 2.5676 18 6 -1.9724 4.1928 1.4333 19 6 -3.2670 4.7010 1.5510 20 6 -4.0139 5.1120 0.3445 21 8 -3.4752 5.0783 -0.7447 22 7 -5.2926 5.5242 0.4515 23 6 -6.0866 5.7692 -0.7552 24 6 -5.8887 5.7273 1.7742 25 6 -3.8521 4.8255 2.8130 26 6 -3.1532 4.4419 3.9382 27 6 -1.8707 3.9321 3.8215 28 9 -1.1914 3.5576 4.9277 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5140 -0.8900 34 1 5.9085 1.5674 -2.2623 35 1 2.2232 2.1404 1.9968 36 1 0.6399 3.3728 3.1935 37 1 -1.5140 4.0984 0.4601 38 1 -6.5982 4.8516 -1.0459 39 1 -6.8227 6.5475 -0.5540 40 1 -5.4297 6.0907 -1.5633 41 1 -5.2688 6.4143 2.3504 42 1 -6.8883 6.1472 1.6618 43 1 -5.9523 4.7717 2.2947 44 1 -4.8519 5.2226 2.9078 45 1 -3.6072 4.5393 4.9133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = -30.040667 kcal Electronic energy + Delta-G solvation = -29674.162775 eV Core-core repulsion = 25415.634596 eV Total energy + Delta-G solvation = -4258.528179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.05848 -40.82864 -39.95777 -38.09919 -36.17994 -35.56009 -34.37393 -32.44627 -31.60846 -31.05645 -30.07349 -28.14605 -27.25814 -26.82080 -23.59858 -23.11913 -22.61514 -20.97645 -20.24349 -19.73045 -18.54552 -17.97396 -17.67235 -16.89900 -16.41494 -16.21301 -16.09828 -15.81820 -15.44939 -15.08443 -14.89167 -14.55457 -14.26559 -13.92779 -13.70530 -13.46030 -13.32537 -13.15890 -13.06590 -12.81379 -12.76844 -12.47854 -12.20220 -12.05765 -11.91672 -11.83919 -10.94930 -10.87907 -10.73000 -10.66506 -10.46770 -10.03073 -9.94910 -9.84172 -9.45062 -9.20652 -9.06045 -8.85194 -8.72067 -8.27898 -7.90447 -6.25324 -4.29576 0.57485 1.14794 2.60116 2.66170 2.92563 3.29612 3.36516 3.44956 3.48997 3.79022 4.00992 4.23180 4.32690 4.44903 4.60567 4.68175 4.82652 4.92887 4.97662 5.10657 5.14480 5.17935 5.27242 5.39862 5.55900 5.65507 5.86005 6.01556 6.07177 6.10317 6.12068 6.24791 6.27285 6.39508 6.60626 6.78957 6.90258 6.93950 6.99235 7.05038 7.13485 7.32795 7.43238 7.53897 8.00079 8.20284 8.59159 8.75790 9.03552 9.36622 10.86004 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.003392 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.391565 B = 8251.561983 C = 9669.441632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.252 3.748 4 H 0.053 0.947 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.709 5.709 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.689 5.689 17 C 0.146 3.854 18 C -0.051 4.051 19 C -0.127 4.127 20 C 0.560 3.440 21 O -0.520 6.520 22 N -0.622 5.622 23 C 0.085 3.915 24 C 0.063 3.937 25 C -0.153 4.153 26 C -0.141 4.141 27 C 0.078 3.922 28 F -0.137 7.137 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.269 0.731 35 H 0.391 0.609 36 H 0.408 0.592 37 H 0.181 0.819 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.187 0.813 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.104 8.733 11.740 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.150 3.850 4 H 0.071 0.929 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.360 5.360 14 C 0.392 3.608 15 O -0.451 6.451 16 N -0.335 5.335 17 C 0.048 3.952 18 C -0.072 4.072 19 C -0.131 4.131 20 C 0.350 3.650 21 O -0.396 6.396 22 N -0.357 5.357 23 C -0.058 4.058 24 C -0.079 4.079 25 C -0.171 4.171 26 C -0.161 4.161 27 C 0.055 3.945 28 F -0.115 7.115 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.244 0.756 37 H 0.198 0.802 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.203 0.797 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.160 8.569 10.088 26.676 hybrid contribution 0.398 0.060 0.342 0.528 sum -22.763 8.629 10.430 26.484 Atomic orbital electron populations 1.21882 0.97334 0.98770 1.02047 1.22081 0.93723 0.99387 1.01268 1.19139 0.94929 0.88669 0.82296 0.92881 1.20989 0.88367 1.52050 0.95531 0.90312 1.24931 0.94821 0.93496 0.98932 1.69879 1.08513 1.48062 1.25831 0.86913 0.81003 0.79798 0.82406 1.19734 1.21164 1.18201 1.46021 1.13293 1.57593 1.19138 1.16204 0.83712 0.78674 0.82181 1.90850 1.53208 1.64748 1.36266 1.42763 1.12008 1.60049 1.18723 1.17479 0.86517 0.98975 0.92261 1.21884 0.92701 0.92054 1.00585 1.19745 0.95636 1.04683 0.93073 1.18250 0.80888 0.77048 0.88830 1.90833 1.67663 1.52712 1.28380 1.47537 1.12264 1.68508 1.07367 1.21705 0.95447 1.00966 0.87653 1.22543 0.99123 1.01672 0.84592 1.23384 1.03346 0.99573 0.90775 1.20899 0.92600 1.02175 1.00391 1.17753 0.91702 1.03743 0.81303 1.91485 1.79659 1.89344 1.51032 0.92832 0.93481 0.95183 0.92995 0.91984 0.92156 0.77527 0.75622 0.80249 0.92597 0.91152 0.90145 0.90126 0.90425 0.90247 0.79664 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.49 37.16 0.32 -2.62 16 2 C -0.13 -2.74 5.60 -26.73 -0.15 -2.89 16 3 C 0.25 5.93 1.92 -69.09 -0.13 5.80 16 4 H 0.05 1.38 4.73 -51.93 -0.25 1.13 16 5 C -0.53 -14.14 9.05 -34.44 -0.31 -14.46 16 6 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 9 Si 0.87 21.77 26.99 -169.99 -4.59 17.19 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.35 6.82 56.52 0.39 -5.97 16 13 N -0.71 -14.10 5.01 -59.82 -0.30 -14.40 16 14 C 0.69 13.40 6.95 -86.92 -0.60 12.79 16 15 O -0.57 -12.83 10.43 5.29 0.06 -12.77 16 16 N -0.69 -10.64 5.31 -14.20 -0.08 -10.72 16 17 C 0.15 2.18 6.44 -83.63 -0.54 1.65 16 18 C -0.05 -0.84 8.32 -39.00 -0.32 -1.16 16 19 C -0.13 -1.70 5.87 -104.99 -0.62 -2.32 16 20 C 0.56 7.94 7.63 -12.38 -0.09 7.84 16 21 O -0.52 -9.70 15.90 5.31 0.08 -9.62 16 22 N -0.62 -5.98 3.27 -229.69 -0.75 -6.73 16 23 C 0.08 0.67 10.48 59.85 0.63 1.30 16 24 C 0.06 0.30 8.47 59.85 0.51 0.81 16 25 C -0.15 -1.41 8.05 -39.17 -0.32 -1.72 16 26 C -0.14 -1.33 10.00 -39.61 -0.40 -1.73 16 27 C 0.08 0.96 7.31 -39.12 -0.29 0.67 16 28 F -0.14 -1.65 16.82 2.25 0.04 -1.61 16 29 H 0.05 1.18 7.75 -51.93 -0.40 0.77 16 30 H 0.05 0.97 5.68 -51.93 -0.30 0.67 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.39 6.81 8.61 -40.82 -0.35 6.46 16 36 H 0.41 5.15 8.49 -40.82 -0.35 4.81 16 37 H 0.18 3.63 5.17 -52.49 -0.27 3.36 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.34 7.88 -51.93 -0.41 -0.07 16 40 H 0.08 0.80 7.33 -51.93 -0.38 0.42 16 41 H 0.08 0.32 6.39 -51.93 -0.33 -0.01 16 42 H 0.08 0.18 7.77 -51.93 -0.40 -0.22 16 43 H 0.08 0.32 6.29 -51.93 -0.33 0.00 16 44 H 0.19 1.00 2.38 -96.90 -0.23 0.77 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -34.75 364.24 -7.37 -42.12 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.68 Total: 10.13 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.42 Total: 6.20 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.35 Total: -57.13 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.14 Total: -22.39 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.75 -7.37 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.081 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds