Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46863 * 2 1 4 4 C 1.42896 * 113.99833 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47404 * 29.99895 * 4 3 2 6 6 C 1.53000 * 109.47121 * 269.99702 * 4 3 2 7 7 C 1.50697 * 109.47370 * 150.00104 * 4 3 2 8 8 O 1.21290 * 119.99620 * 12.55665 * 7 4 3 9 9 N 1.34781 * 120.00484 * 192.55901 * 7 4 3 10 10 C 1.46496 * 119.99807 * 5.05431 * 9 7 4 11 11 C 1.50692 * 109.47495 * 84.08761 * 10 9 7 12 12 H 1.08003 * 120.00495 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00108 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99978 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47154 * 60.00127 * 15 13 11 17 17 H 1.48503 * 109.47048 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47221 * 299.99818 * 15 13 11 19 19 C 1.46501 * 119.99940 * 185.04686 * 9 7 4 20 20 C 1.53001 * 109.46850 * 233.33195 * 19 9 7 21 21 C 1.53005 * 109.46729 * 180.02562 * 20 19 9 22 22 C 1.53003 * 109.47082 * 60.00340 * 21 20 19 23 23 C 1.53005 * 109.46785 * 299.99688 * 22 21 20 24 24 C 1.52993 * 109.47446 * 300.00126 * 23 22 21 25 25 C 1.52997 * 109.47312 * 59.99834 * 24 23 22 26 26 C 1.52993 * 109.47132 * 300.00225 * 21 20 19 27 27 C 1.52993 * 109.47283 * 353.33586 * 19 9 7 28 28 C 1.52996 * 109.47040 * 60.00433 * 23 22 21 29 29 H 1.09000 * 109.46842 * 299.99485 * 1 2 3 30 30 H 1.08997 * 109.47169 * 59.99877 * 1 2 3 31 31 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47431 * 240.00036 * 2 1 3 33 33 H 1.09002 * 109.47579 * 119.99523 * 2 1 3 34 34 H 1.09003 * 109.47296 * 175.46209 * 6 4 3 35 35 H 1.09000 * 109.47419 * 295.46186 * 6 4 3 36 36 H 1.09000 * 109.47026 * 55.46544 * 6 4 3 37 37 H 1.08998 * 109.46695 * 204.09380 * 10 9 7 38 38 H 1.09008 * 109.46823 * 324.09180 * 10 9 7 39 39 H 0.96998 * 119.99904 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47464 * 300.00274 * 20 19 9 41 41 H 1.08998 * 109.46810 * 60.00766 * 20 19 9 42 42 H 1.09005 * 109.46884 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.46992 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46913 * 59.99468 * 22 21 20 45 45 H 1.08998 * 109.46535 * 179.97438 * 23 22 21 46 46 H 1.09008 * 109.46733 * 300.00298 * 24 23 22 47 47 H 1.08988 * 109.47464 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.47318 * 180.02562 * 25 24 23 49 49 H 1.09007 * 109.47569 * 299.99850 * 26 21 20 50 50 H 1.09001 * 109.47368 * 180.02562 * 26 21 20 51 51 H 1.09007 * 109.47569 * 299.99610 * 27 19 9 52 52 H 1.09005 * 109.47443 * 59.99848 * 27 19 9 53 53 H 1.08998 * 109.47128 * 179.97438 * 28 23 22 54 54 H 1.09000 * 109.47800 * 59.99520 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 3.8341 2.7266 -0.7109 8 8 3.0004 3.5687 -0.9694 9 7 5.1213 2.9234 -1.0591 10 6 6.1079 1.8614 -0.8474 11 6 6.0707 0.9023 -2.0090 12 1 5.3813 1.0674 -2.8239 13 6 6.9167 -0.1862 -2.0317 14 7 7.7559 -0.3877 -1.0393 15 14 6.8711 -1.3748 -3.4721 16 1 7.1907 -0.6458 -4.7258 17 1 7.8712 -2.4514 -3.2574 18 1 5.5156 -1.9718 -3.5785 19 6 5.5335 4.1993 -1.6493 20 6 6.2650 3.9386 -2.9676 21 6 6.6962 5.2712 -3.5836 22 6 7.6312 6.0010 -2.6172 23 6 6.8996 6.2617 -1.2989 24 6 5.6643 7.1248 -1.5631 25 6 4.7294 6.3949 -2.5295 26 6 5.4609 6.1343 -3.8478 27 6 4.2979 5.0619 -1.9135 28 6 6.4686 4.9292 -0.6829 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.0298 1.5051 1.4424 35 1 3.5723 2.4019 1.9318 36 1 3.5801 0.6225 1.9785 37 1 7.1027 2.3000 -0.7699 38 1 5.8740 1.3264 0.0731 39 1 8.3513 -1.1532 -1.0554 40 1 7.1454 3.3240 -2.7793 41 1 5.5990 3.4183 -3.6559 42 1 7.2177 5.0854 -4.5226 43 1 7.9387 6.9501 -3.0563 44 1 8.5112 5.3860 -2.4290 45 1 7.5659 6.7812 -0.6103 46 1 5.9716 8.0741 -2.0020 47 1 5.1435 7.3108 -0.6239 48 1 3.8495 7.0101 -2.7181 49 1 4.7947 5.6143 -4.5363 50 1 5.7679 7.0834 -4.2871 51 1 3.6319 4.5416 -2.6019 52 1 3.7767 5.2476 -0.9743 53 1 5.9478 5.1148 0.2565 54 1 7.3486 4.3142 -0.4946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097101971.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = -104.075419 kcal Electronic energy + Delta-G solvation = -32734.966876 eV Core-core repulsion = 28863.373531 eV Total energy + Delta-G solvation = -3871.593345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.225 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.72882 -40.61370 -38.66841 -36.84015 -34.64587 -33.72968 -33.49161 -33.36641 -31.94048 -30.65673 -29.03445 -26.85018 -26.72317 -25.70346 -24.59560 -23.65712 -22.58183 -22.31454 -21.97338 -20.01265 -18.67757 -18.32300 -18.11000 -17.41759 -16.91182 -16.64142 -16.38437 -16.10130 -15.44027 -15.35541 -15.31370 -15.08111 -14.70747 -14.30017 -14.24252 -14.16248 -14.02437 -13.89785 -13.87277 -13.50172 -13.37511 -13.24714 -13.13091 -13.06724 -12.92387 -12.83670 -12.45009 -12.30955 -12.17345 -12.14144 -12.10673 -11.81798 -11.74107 -11.66320 -11.58308 -11.52279 -11.17682 -10.70747 -10.64983 -10.58449 -10.49471 -9.62531 -9.28445 -8.20313 -6.32793 1.37410 1.39436 1.45913 1.71327 2.00957 2.38069 2.94801 3.08873 3.55380 3.65146 3.74423 3.84915 4.03951 4.11294 4.17063 4.19034 4.23436 4.32626 4.35004 4.35663 4.36806 4.39582 4.45336 4.48929 4.51017 4.58177 4.67381 4.76535 4.82937 4.84510 4.84931 4.89182 4.91608 4.98691 5.04561 5.05099 5.17380 5.20282 5.22003 5.23891 5.24443 5.25234 5.31314 5.36193 5.42048 5.48240 5.61620 5.62432 5.68363 5.71840 5.94889 6.08520 6.20635 6.57459 6.83576 7.32923 7.44179 8.84297 Molecular weight = 335.22amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.005793 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.314015 B = 4832.570534 C = 6776.628091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 O -0.385 6.385 4 C 0.073 3.927 5 H 0.082 0.918 6 C -0.157 4.157 7 C 0.511 3.489 8 O -0.568 6.568 9 N -0.588 5.588 10 C 0.247 3.753 11 C -0.536 4.536 12 H 0.043 0.957 13 C 0.030 3.970 14 N -0.913 5.913 15 Si 0.943 3.057 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.176 3.824 20 C -0.100 4.100 21 C -0.083 4.083 22 C -0.103 4.103 23 C -0.077 4.077 24 C -0.100 4.100 25 C -0.096 4.096 26 C -0.102 4.102 27 C -0.075 4.075 28 C -0.112 4.112 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.039 0.961 39 H 0.268 0.732 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.087 0.913 51 H 0.036 0.964 52 H 0.061 0.939 53 H 0.053 0.947 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 9.277 0.729 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 O -0.304 6.304 4 C 0.012 3.988 5 H 0.100 0.900 6 C -0.214 4.214 7 C 0.299 3.701 8 O -0.449 6.449 9 N -0.318 5.318 10 C 0.127 3.873 11 C -0.575 4.575 12 H 0.061 0.939 13 C -0.171 4.171 14 N -0.552 5.552 15 Si 0.769 3.231 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.200 1.200 19 C 0.092 3.908 20 C -0.139 4.139 21 C -0.102 4.102 22 C -0.140 4.140 23 C -0.096 4.096 24 C -0.137 4.137 25 C -0.115 4.115 26 C -0.139 4.139 27 C -0.112 4.112 28 C -0.150 4.150 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.054 0.946 52 H 0.080 0.920 53 H 0.071 0.929 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.659 9.721 0.672 10.409 hybrid contribution 0.272 -1.754 -0.741 1.924 sum -3.388 7.966 -0.069 8.657 Atomic orbital electron populations 1.21719 0.91802 1.03558 1.02721 1.22812 0.97053 0.82773 1.00600 1.87927 1.19258 1.28010 1.95199 1.21882 0.82561 0.96777 0.97603 0.89973 1.22157 1.02018 1.03457 0.93812 1.20566 0.82541 0.88009 0.78942 1.90641 1.51880 1.45471 1.56904 1.48255 1.08000 1.15954 1.59575 1.19228 0.87223 0.84338 0.96528 1.21518 1.20653 1.09248 1.06087 0.93904 1.25480 0.94781 0.98816 0.98057 1.69975 1.22839 1.30070 1.32346 0.85839 0.78003 0.78969 0.80296 1.20144 1.20369 1.19958 1.20508 0.95176 0.82319 0.92821 1.21697 0.99307 0.97497 0.95397 1.21100 0.96751 0.93594 0.98737 1.21538 0.97019 1.00818 0.94632 1.21053 0.97320 0.94051 0.97206 1.21512 0.95038 0.98309 0.98867 1.21339 0.98473 0.95907 0.95740 1.21523 0.95954 1.00060 0.96392 1.21838 0.94125 0.94543 1.00735 1.21850 0.98385 0.97187 0.97614 0.91599 0.92875 0.88510 0.94044 0.91896 0.90758 0.91930 0.89836 0.95807 0.94294 0.92311 0.92916 0.94849 0.90580 0.89279 0.92544 0.89230 0.89468 0.92366 0.90693 0.93483 0.89483 0.94553 0.92014 0.92868 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 10.28 71.98 0.74 -2.65 16 2 C 0.04 1.34 6.47 71.98 0.47 1.81 16 3 O -0.38 -15.12 9.55 -130.25 -1.24 -16.37 16 4 C 0.07 2.95 2.31 29.85 0.07 3.02 16 5 H 0.08 3.61 6.57 -2.39 -0.02 3.59 16 6 C -0.16 -5.43 9.26 71.98 0.67 -4.76 16 7 C 0.51 22.97 6.85 87.66 0.60 23.57 16 8 O -0.57 -27.33 11.79 15.67 0.18 -27.14 16 9 N -0.59 -25.57 2.37 -779.09 -1.85 -27.42 16 10 C 0.25 11.71 3.94 85.63 0.34 12.05 16 11 C -0.54 -27.71 7.68 25.60 0.20 -27.51 16 12 H 0.04 2.33 7.81 -2.91 -0.02 2.30 16 13 C 0.03 1.53 5.46 84.66 0.46 1.99 16 14 N -0.91 -49.00 13.29 21.45 0.28 -48.72 16 15 Si 0.94 41.76 29.54 68.60 2.03 43.79 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 C 0.18 6.70 0.82 3.60 0.00 6.70 16 20 C -0.10 -3.81 3.86 30.60 0.12 -3.69 16 21 C -0.08 -2.35 3.19 -10.79 -0.03 -2.38 16 22 C -0.10 -2.48 5.19 30.60 0.16 -2.32 16 23 C -0.08 -1.94 3.19 -10.80 -0.03 -1.97 16 24 C -0.10 -2.32 5.19 30.59 0.16 -2.16 16 25 C -0.10 -2.66 3.20 -10.78 -0.03 -2.70 16 26 C -0.10 -2.63 5.19 30.59 0.16 -2.47 16 27 C -0.07 -2.78 2.85 30.61 0.09 -2.70 16 28 C -0.11 -3.70 4.56 30.59 0.14 -3.56 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.06 1.69 7.79 -2.39 -0.02 1.68 16 34 H 0.07 2.69 5.75 -2.39 -0.01 2.68 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.47 7.79 -2.39 -0.02 2.45 16 37 H 0.02 1.20 6.52 -2.39 -0.02 1.18 16 38 H 0.04 1.88 4.52 -2.38 -0.01 1.87 16 39 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.05 2.24 7.02 -2.39 -0.02 2.22 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.04 1.57 7.01 -2.38 -0.02 1.55 16 52 H 0.06 2.54 6.37 -2.38 -0.02 2.52 16 53 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.05 1.91 6.99 -2.39 -0.02 1.90 16 Total: -1.00 -61.36 390.04 4.52 -56.84 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.86 Total: 28.76 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.26 Total: -9.74 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -1.56 Total: -76.14 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.06 Total: -43.51 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -61.36 4.52 -56.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101971.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.234 kcal (2) G-P(sol) polarization free energy of solvation -61.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds