Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30050 * 124.94279 * 2 1 4 4 C 1.35775 * 109.43470 * 180.02562 * 3 2 1 5 5 C 1.39471 * 133.74670 * 179.97438 * 4 3 2 6 6 C 1.39727 * 118.05517 * 179.97438 * 5 4 3 7 7 C 1.47554 * 120.39232 * 179.97438 * 6 5 4 8 8 O 1.21494 * 120.00051 * 0.02562 * 7 6 5 9 9 O 1.34734 * 120.00253 * 180.02562 * 7 6 5 10 10 C 1.45199 * 117.00077 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47069 * 179.97438 * 10 9 7 12 12 C 1.38639 * 119.75452 * 269.72970 * 11 10 9 13 13 C 1.37611 * 120.25118 * 179.72355 * 12 11 10 14 14 C 1.40720 * 119.74528 * 0.56589 * 13 12 11 15 15 C 1.41388 * 120.24498 * 179.68630 * 14 13 12 16 16 H 1.08003 * 120.00051 * 155.31510 * 15 14 13 17 17 C 1.39950 * 120.00178 * 335.31118 * 15 14 13 18 18 N 1.30819 * 119.99548 * 342.23452 * 17 15 14 19 19 Si 1.86799 * 120.00236 * 162.23551 * 17 15 14 20 20 H 1.48501 * 109.47084 * 94.66075 * 19 17 15 21 21 H 1.48497 * 109.47140 * 214.66628 * 19 17 15 22 22 H 1.48498 * 109.46822 * 334.66363 * 19 17 15 23 23 C 1.40714 * 119.50817 * 359.70522 * 14 13 12 24 24 C 1.37616 * 119.75054 * 0.02562 * 23 14 13 25 25 C 1.40045 * 119.21855 * 359.97438 * 6 5 4 26 26 N 1.31368 * 121.15169 * 0.02562 * 25 6 5 27 27 C 1.32553 * 121.80432 * 359.97438 * 26 25 6 28 28 N 1.36170 * 124.94320 * 179.97438 * 2 1 3 29 29 H 0.96999 * 126.23647 * 0.02562 * 28 2 1 30 30 H 1.09005 * 109.46742 * 270.06302 * 1 2 3 31 31 H 1.08996 * 109.47083 * 30.06143 * 1 2 3 32 32 H 1.09000 * 109.47147 * 150.06667 * 1 2 3 33 33 H 1.08008 * 120.97268 * 359.97438 * 5 4 3 34 34 H 1.08998 * 109.47085 * 299.99146 * 10 9 7 35 35 H 1.08997 * 109.47266 * 59.99729 * 10 9 7 36 36 H 1.08000 * 119.87230 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.13182 * 180.28125 * 13 12 11 38 38 H 0.97003 * 120.00022 * 179.97438 * 18 17 15 39 39 H 1.08009 * 120.12637 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.87829 * 179.97438 * 24 23 14 41 41 H 1.07997 * 119.42206 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0661 0.0000 4 6 3.5602 0.7030 -0.0006 5 6 4.7589 1.4160 -0.0013 6 6 5.9541 0.6922 -0.0012 7 6 7.2519 1.3942 -0.0025 8 8 7.2857 2.6087 -0.0032 9 8 8.3996 0.6884 -0.0029 10 6 9.6389 1.4451 -0.0048 11 6 10.8080 0.4943 -0.0043 12 6 11.3463 0.0662 1.1994 13 6 12.4103 -0.8064 1.2118 14 6 12.9596 -1.2549 -0.0037 15 6 14.0571 -2.1462 -0.0033 16 1 14.2294 -2.7910 -0.8525 17 6 14.9202 -2.1930 1.0973 18 7 14.9386 -1.2067 1.9564 19 14 16.0460 -3.6639 1.3396 20 1 17.3766 -3.3715 0.7486 21 1 16.1982 -3.9369 2.7913 22 1 15.4580 -4.8526 0.6715 23 6 12.4088 -0.8092 -1.2194 24 6 11.3412 0.0591 -1.2079 25 6 5.9057 -0.7074 0.0002 26 7 4.7586 -1.3477 0.0008 27 6 3.5996 -0.7046 0.0008 28 7 2.2870 -1.1162 0.0005 29 1 1.9741 -2.0343 0.0006 30 1 -0.3633 0.0011 1.0277 31 1 -0.3633 0.8894 -0.5148 32 1 -0.3633 -0.8906 -0.5128 33 1 4.7632 2.4961 -0.0019 34 1 9.6804 2.0721 -0.8954 35 1 9.6820 2.0739 0.8845 36 1 10.9263 0.4157 2.1310 37 1 12.8251 -1.1422 2.1507 38 1 15.5366 -1.2392 2.7196 39 1 12.8228 -1.1467 -2.1582 40 1 10.9171 0.4027 -2.1398 41 1 6.8275 -1.2701 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097108300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = 11.489982 kcal Electronic energy + Delta-G solvation = -26380.762724 eV Core-core repulsion = 22418.971580 eV Total energy + Delta-G solvation = -3961.791144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.77274 -40.21908 -38.51088 -37.63474 -36.08716 -34.04279 -33.87676 -32.08629 -31.73569 -30.76651 -29.37495 -28.68004 -27.16910 -24.81984 -23.59729 -23.27901 -21.75600 -21.09384 -20.90712 -20.05906 -18.78173 -18.36106 -17.39542 -16.94671 -16.52635 -16.35791 -15.94435 -15.82539 -15.32852 -14.44375 -14.03512 -14.01306 -13.98579 -13.75664 -13.68411 -13.35157 -13.08297 -12.82345 -12.60487 -12.48990 -12.24498 -12.03093 -11.59141 -11.54050 -11.39427 -11.26624 -11.12472 -10.70321 -10.63677 -10.41553 -10.17780 -9.70930 -9.55367 -9.47341 -9.27142 -9.21574 -8.82423 -7.56550 -7.46172 -6.87730 -4.46736 0.34684 0.52295 2.06431 2.29674 2.37842 2.59210 2.89543 3.00655 3.02739 3.07327 3.23889 3.57385 3.65135 3.85473 3.96200 4.27766 4.49205 4.56521 4.60671 4.76750 4.79043 4.88873 5.16772 5.26440 5.46070 5.60768 5.67141 5.68227 5.72118 5.79160 6.08269 6.16519 6.25437 6.31791 6.65270 6.74889 6.87481 6.97148 7.17951 7.26052 7.26959 7.48414 7.51498 7.73400 7.95664 7.96753 8.00787 8.19043 8.53558 8.78217 8.86397 10.06365 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.001939 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.865501 B =14435.599746 C =15161.441333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.475 5.475 4 C -0.011 4.011 5 C 0.049 3.951 6 C -0.182 4.182 7 C 0.513 3.487 8 O -0.513 6.513 9 O -0.344 6.344 10 C 0.138 3.862 11 C -0.237 4.237 12 C -0.074 4.074 13 C -0.171 4.171 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.230 4.230 24 C -0.062 4.062 25 C 0.199 3.801 26 N -0.488 5.488 27 C 0.264 3.736 28 N -0.585 5.585 29 H 0.429 0.571 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 -0.443 -1.512 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 N -0.196 5.196 4 C -0.131 4.131 5 C 0.022 3.978 6 C -0.189 4.189 7 C 0.356 3.644 8 O -0.403 6.403 9 O -0.260 6.260 10 C 0.066 3.934 11 C -0.238 4.238 12 C -0.093 4.093 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.250 4.250 24 C -0.081 4.081 25 C 0.030 3.970 26 N -0.201 5.201 27 C 0.027 3.973 28 N -0.200 5.200 29 H 0.270 0.730 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.175 0.825 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.547 -0.001 -1.296 23.582 hybrid contribution 0.849 -0.875 0.201 1.236 sum -22.698 -0.876 -1.095 22.741 Atomic orbital electron populations 1.20446 0.83223 1.05169 1.04718 1.23748 0.95881 0.80233 0.97541 1.70449 1.00195 1.27490 1.21454 1.19464 0.92739 0.91579 1.09290 1.20831 0.87294 1.01276 0.88413 1.19968 0.91624 0.95144 1.12114 1.20619 0.84864 0.85681 0.73188 1.90819 1.88392 1.14714 1.46394 1.86738 1.14668 1.42006 1.82627 1.21781 0.77996 0.92391 1.01236 1.18646 1.00397 1.10654 0.94135 1.20542 0.96411 0.97210 0.95110 1.21291 0.97210 1.01714 0.98782 1.17694 0.90591 0.89119 0.90971 1.19676 1.07994 1.18611 1.02169 0.90163 1.25972 0.97372 0.96297 0.94713 1.69822 1.31880 1.28383 1.10910 0.86283 0.79987 0.81932 0.78496 1.19465 1.19927 1.18294 1.20951 1.02080 1.04835 0.97114 1.20397 0.95879 0.96595 0.95216 1.23147 0.94686 0.90436 0.88681 1.66552 0.95704 1.40396 1.17418 1.19190 0.86314 0.91219 1.00559 1.42730 1.03661 1.10734 1.62873 0.73048 0.88874 0.88056 0.89736 0.82503 0.91820 0.91744 0.89253 0.86299 0.90631 0.88720 0.89231 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.29 2.35 8.08 -154.75 -1.25 1.10 16 3 N -0.48 -5.55 11.29 -8.20 -0.09 -5.65 16 4 C -0.01 -0.15 7.23 -84.69 -0.61 -0.76 16 5 C 0.05 0.64 9.75 -38.57 -0.38 0.26 16 6 C -0.18 -2.51 5.89 -104.87 -0.62 -3.13 16 7 C 0.51 8.26 7.90 34.53 0.27 8.53 16 8 O -0.51 -9.22 16.19 -19.26 -0.31 -9.54 16 9 O -0.34 -5.99 9.46 -40.58 -0.38 -6.37 16 10 C 0.14 2.54 5.59 36.01 0.20 2.74 16 11 C -0.24 -5.09 5.54 -104.32 -0.58 -5.67 16 12 C -0.07 -1.69 9.67 -39.66 -0.38 -2.07 16 13 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 14 C 0.12 3.08 5.57 -106.83 -0.60 2.49 16 15 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 16 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 17 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.79 -19.66 10.97 55.55 0.61 -19.05 16 19 Si 0.91 18.01 29.60 -169.99 -5.03 12.98 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 23 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 24 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 25 C 0.20 2.58 10.77 -17.07 -0.18 2.39 16 26 N -0.49 -6.32 10.36 -11.95 -0.12 -6.45 16 27 C 0.26 3.18 8.45 -155.64 -1.31 1.86 16 28 N -0.58 -4.76 6.20 -9.44 -0.06 -4.82 16 29 H 0.43 2.03 8.96 -40.82 -0.37 1.66 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.16 1.94 7.72 -52.48 -0.41 1.54 16 34 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.09 6.18 -52.49 -0.32 2.76 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.19 2.23 7.60 -52.49 -0.40 1.84 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.15 364.08 -10.92 -42.07 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.42 Total: 6.01 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -6.59 Total: -14.67 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.33 Total: -35.96 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.70 Total: -15.91 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.15 -10.92 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097108300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.558 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds