Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86803 * 119.99928 * 2 1 4 4 H 1.48494 * 109.47202 * 274.65014 * 3 2 1 5 5 H 1.48495 * 109.47288 * 34.65111 * 3 2 1 6 6 H 1.48502 * 109.47104 * 154.65038 * 3 2 1 7 7 C 1.39862 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00273 * 162.12838 * 7 2 1 9 9 C 1.41143 * 120.00168 * 342.13127 * 7 2 1 10 10 C 1.40881 * 120.15730 * 155.08076 * 9 7 2 11 11 C 1.36338 * 119.83456 * 180.02562 * 10 9 7 12 12 C 1.39563 * 120.16263 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84068 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99539 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46884 * 179.97438 * 14 13 12 16 16 C 1.33856 * 125.90175 * 90.00126 * 15 14 13 17 17 N 1.31169 * 115.83606 * 179.97438 * 16 15 14 18 18 C 1.30224 * 117.08269 * 359.97438 * 17 16 15 19 19 C 1.47842 * 125.47456 * 179.97438 * 18 17 16 20 20 C 1.39530 * 119.74203 * 0.02562 * 19 18 17 21 21 C 1.38356 * 119.05374 * 179.97438 * 20 19 18 22 22 C 1.38813 * 118.52560 * 0.02562 * 21 20 19 23 23 C 1.38290 * 119.40373 * 0.24908 * 22 21 20 24 24 N 1.31729 * 120.90820 * 359.48274 * 23 22 21 25 25 S 1.76180 * 109.05973 * 0.22845 * 18 17 16 26 26 C 1.39566 * 120.31553 * 0.25458 * 12 11 10 27 27 C 1.36335 * 120.15976 * 359.48594 * 26 12 11 28 28 H 0.96998 * 119.99927 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.07949 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.91838 * 179.97438 * 11 10 9 31 31 H 0.96998 * 119.99886 * 359.97438 * 13 12 11 32 32 H 1.09001 * 109.47681 * 60.00114 * 14 13 12 33 33 H 1.08998 * 109.47541 * 299.99465 * 14 13 12 34 34 H 1.08005 * 122.07839 * 359.97438 * 16 15 14 35 35 H 1.08003 * 120.47801 * 0.02562 * 20 19 18 36 36 H 1.07996 * 120.73912 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.30205 * 179.97438 * 22 21 20 38 38 H 1.07994 * 119.54897 * 179.72600 * 23 22 21 39 39 H 1.08003 * 119.92021 * 179.71863 * 26 12 11 40 40 H 1.08000 * 120.08644 * 180.23164 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3923 2.1032 -1.3954 5 1 1.4932 2.6223 0.7960 6 1 3.5863 1.4138 0.5994 7 6 2.0084 -1.2112 0.0005 8 1 3.0493 -1.2340 -0.2865 9 6 1.3538 -2.4039 0.3761 10 6 1.8228 -3.6467 -0.0932 11 6 1.1852 -4.7947 0.2733 12 6 0.0708 -4.7408 1.1117 13 7 -0.5739 -5.9142 1.4804 14 6 -1.7443 -5.8615 2.3598 15 6 -2.2524 -7.2592 2.6040 16 6 -1.8700 -8.0710 3.5973 17 7 -2.4426 -9.2508 3.6238 18 6 -3.3148 -9.5076 2.6915 19 6 -4.0670 -10.7719 2.5450 20 6 -3.8624 -11.8086 3.4562 21 6 -4.5744 -12.9854 3.3059 22 6 -5.4682 -13.0891 2.2490 23 6 -5.6177 -12.0244 1.3792 24 7 -4.9317 -10.9124 1.5468 25 16 -3.4492 -8.1091 1.6284 26 6 -0.4023 -3.5129 1.5766 27 6 0.2285 -2.3573 1.2226 28 1 -0.4850 0.8400 -0.0004 29 1 2.6853 -3.6899 -0.7417 30 1 1.5434 -5.7481 -0.0861 31 1 -0.2497 -6.7685 1.1550 32 1 -2.5273 -5.2681 1.8877 33 1 -1.4651 -5.4050 3.3094 34 1 -1.1358 -7.7730 4.3312 35 1 -3.1591 -11.6939 4.2677 36 1 -4.4377 -13.8051 3.9956 37 1 -6.0385 -13.9948 2.1045 38 1 -6.3092 -12.1042 0.5535 39 1 -1.2680 -3.4783 2.2215 40 1 -0.1363 -1.4080 1.5861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097115662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = 108.204674 kcal Electronic energy + Delta-G solvation = -23544.379931 eV Core-core repulsion = 20029.535522 eV Total energy + Delta-G solvation = -3514.844410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60904 -39.51935 -37.96583 -35.37461 -33.39849 -33.00865 -32.41205 -30.54029 -29.48054 -28.40646 -26.70368 -24.84492 -23.99748 -23.59036 -22.98895 -21.10601 -20.11202 -19.73646 -18.24141 -17.22071 -17.18928 -16.39855 -16.30226 -15.90575 -15.33914 -15.01380 -14.91580 -14.57924 -14.06311 -13.89461 -13.74336 -13.64784 -13.54455 -12.94921 -12.65340 -12.40927 -12.24894 -11.86486 -11.74698 -11.52645 -11.12661 -11.02419 -10.86137 -10.48236 -10.43853 -10.17780 -10.07145 -9.77035 -9.72205 -9.43389 -9.29176 -9.24356 -8.60420 -8.55996 -7.51534 -6.65813 -6.43147 -4.05157 -0.14877 0.81586 1.06745 1.10998 1.62070 2.61695 2.90203 3.08510 3.14782 3.19663 3.26817 3.33541 3.47002 4.04957 4.30228 4.37919 4.40851 4.54556 4.61887 4.75021 4.75525 4.82930 5.04581 5.15662 5.34751 5.60157 5.70405 5.75556 5.78461 5.87804 5.98642 6.17958 6.24894 6.29194 6.86456 6.91673 7.18315 7.33966 7.36815 7.50183 7.51407 7.66906 7.80963 8.13706 8.25284 8.44800 8.64023 8.76791 9.04800 9.13045 10.36212 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.038416 B = 0.001778 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.681507 B =15743.367658 C =15851.076321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.186 4.186 11 C -0.154 4.154 12 C 0.089 3.911 13 N -0.758 5.758 14 C 0.214 3.786 15 C -0.217 4.217 16 C 0.046 3.954 17 N -0.453 5.453 18 C 0.086 3.914 19 C 0.192 3.808 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.165 4.165 23 C 0.107 3.893 24 N -0.473 5.473 25 S 0.170 5.830 26 C -0.163 4.163 27 C -0.125 4.125 28 H 0.276 0.724 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.386 0.614 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.179 0.821 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.163 0.837 39 H 0.088 0.912 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 -22.264 6.555 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.073 3.927 10 C -0.207 4.207 11 C -0.177 4.177 12 C -0.008 4.008 13 N -0.395 5.395 14 C 0.087 3.913 15 C -0.340 4.340 16 C -0.108 4.108 17 N -0.168 5.168 18 C -0.188 4.188 19 C 0.054 3.946 20 C -0.148 4.148 21 C -0.102 4.102 22 C -0.186 4.186 23 C -0.052 4.052 24 N -0.184 5.184 25 S 0.427 5.573 26 C -0.185 4.185 27 C -0.145 4.145 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.218 0.782 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.196 0.804 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.106 0.894 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.513 -21.394 5.527 25.393 hybrid contribution 1.120 0.008 0.998 1.500 sum -11.393 -21.386 6.525 25.094 Atomic orbital electron populations 1.69855 1.07374 1.28646 1.37522 1.25801 0.94656 1.00915 0.92679 0.86408 0.80754 0.81303 0.78824 1.19850 1.20273 1.18652 1.19370 0.97908 0.91358 1.41106 0.90912 1.17514 0.92409 0.92014 0.90782 1.20544 1.02741 0.92577 1.04801 1.19801 0.97804 0.97117 1.02934 1.17297 0.95874 0.85273 1.02317 1.43847 1.32441 1.06306 1.56875 1.19323 0.89076 0.87300 0.95601 1.26446 1.03770 1.03189 1.00589 1.21593 1.01568 0.87791 0.99864 1.66414 1.07939 1.19733 1.22724 1.25217 1.00128 0.97284 0.96203 1.18412 0.93539 0.90401 0.92276 1.22129 1.00084 0.92725 0.99817 1.21622 0.94102 0.97352 0.97133 1.22304 0.99593 1.00643 0.96034 1.22718 0.96395 0.87795 0.98279 1.67521 1.05792 1.25631 1.19413 1.85312 1.36597 1.07003 1.28387 1.20083 1.01455 0.91911 1.05017 1.20921 0.98194 0.96424 0.98925 0.91302 0.88986 0.89576 0.78161 0.91957 0.90948 0.80371 0.83480 0.84125 0.84263 0.81957 0.89378 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.38 10.98 55.54 0.61 -20.77 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.65 9.03 -37.87 -0.34 -12.99 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.08 2.04 5.57 -106.79 -0.59 1.45 16 10 C -0.19 -4.61 9.74 -39.27 -0.38 -4.99 16 11 C -0.15 -3.46 9.82 -39.77 -0.39 -3.85 16 12 C 0.09 1.91 6.67 -83.69 -0.56 1.35 16 13 N -0.76 -13.07 5.69 -59.67 -0.34 -13.41 16 14 C 0.21 3.15 5.42 -5.19 -0.03 3.12 16 15 C -0.22 -2.83 5.96 -35.84 -0.21 -3.04 16 16 C 0.05 0.57 11.15 -19.37 -0.22 0.35 16 17 N -0.45 -5.83 10.11 -11.36 -0.11 -5.95 16 18 C 0.09 1.09 7.39 -14.31 -0.11 0.98 16 19 C 0.19 2.18 6.75 -83.03 -0.56 1.62 16 20 C -0.12 -1.11 9.72 -39.06 -0.38 -1.49 16 21 C -0.08 -0.48 10.16 -39.33 -0.40 -0.88 16 22 C -0.16 -0.93 10.11 -39.35 -0.40 -1.33 16 23 C 0.11 0.80 11.17 -17.58 -0.20 0.60 16 24 N -0.47 -5.16 10.11 -9.85 -0.10 -5.26 16 25 S 0.17 2.16 23.21 -107.50 -2.50 -0.33 16 26 C -0.16 -3.75 9.23 -39.77 -0.37 -4.12 16 27 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 29 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.39 6.20 8.46 -40.82 -0.35 5.86 16 32 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 33 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 34 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.15 1.23 7.81 -52.48 -0.41 0.82 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 38 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.09 1.82 6.68 -52.48 -0.35 1.47 16 40 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -30.16 362.21 -11.91 -42.07 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.34 Total: 8.99 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -5.56 Total: -24.96 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.06 Total: -45.38 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.50 Total: -0.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.16 -11.91 -42.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097115662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.275 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds