Wall clock time and date at job start Tue Mar 31 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 C 1.52995 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.53000 * 109.47296 * 174.99869 * 4 2 1 6 6 N 1.46898 * 109.47112 * 180.53391 * 5 4 2 7 7 C 1.46895 * 111.00268 * 298.00358 * 6 5 4 8 8 C 1.50696 * 109.47179 * 292.92588 * 7 6 5 9 9 H 1.07998 * 120.00050 * 354.99563 * 8 7 6 10 10 C 1.37878 * 120.00022 * 174.99610 * 8 7 6 11 11 N 1.31513 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99882 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47335 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47306 * 120.00045 * 12 10 8 15 15 H 1.48499 * 109.47054 * 239.99662 * 12 10 8 16 16 C 1.46905 * 110.99990 * 61.95969 * 6 5 4 17 17 C 1.50698 * 109.47217 * 66.04103 * 16 6 5 18 18 N 1.30116 * 124.95046 * 274.97663 * 17 16 6 19 19 C 1.35785 * 109.64395 * 180.02562 * 18 17 16 20 20 C 1.39758 * 133.55372 * 180.02562 * 19 18 17 21 21 C 1.37692 * 119.76287 * 179.97438 * 20 19 18 22 22 Cl 1.73594 * 119.75009 * 179.97438 * 21 20 19 23 23 C 1.38896 * 120.49348 * 0.02562 * 21 20 19 24 24 C 1.37807 * 120.45142 * 359.97438 * 23 21 20 25 25 C 1.38824 * 119.84712 * 359.97438 * 24 23 21 26 26 N 1.36026 * 124.95042 * 95.00102 * 17 16 6 27 27 H 0.96999 * 126.34338 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.47148 * 300.00101 * 1 2 3 29 29 H 1.08998 * 109.47090 * 59.99575 * 1 2 3 30 30 H 1.09002 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46933 * 240.00230 * 2 1 3 32 32 H 1.09001 * 109.47087 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47247 * 300.00049 * 3 2 1 34 34 H 1.09004 * 109.47230 * 59.99950 * 3 2 1 35 35 H 1.09000 * 109.46872 * 54.99832 * 4 2 1 36 36 H 1.09000 * 109.47212 * 295.00408 * 4 2 1 37 37 H 1.08999 * 109.46998 * 60.53452 * 5 4 2 38 38 H 1.08998 * 109.46634 * 300.53832 * 5 4 2 39 39 H 1.09003 * 109.47424 * 52.92648 * 7 6 5 40 40 H 1.09005 * 109.47021 * 172.92387 * 7 6 5 41 41 H 0.97002 * 119.99494 * 180.02562 * 11 10 8 42 42 H 1.09001 * 109.46874 * 306.04227 * 16 6 5 43 43 H 1.08996 * 109.47202 * 186.04121 * 16 6 5 44 44 H 1.08006 * 120.11805 * 359.97438 * 20 19 18 45 45 H 1.08006 * 119.77096 * 179.97438 * 23 21 20 46 46 H 1.07995 * 120.08032 * 179.70887 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0534 -1.5348 2.3812 7 6 3.7231 -0.7903 3.6037 8 6 4.5012 0.5000 3.6317 9 1 5.2331 0.7060 2.8647 10 6 4.2786 1.4175 4.6365 11 7 3.3877 1.1665 5.5707 12 14 5.2425 3.0173 4.6708 13 1 6.1765 3.0573 3.5169 14 1 4.3023 4.1637 4.5872 15 1 6.0155 3.1024 5.9358 16 6 3.5233 -2.9037 2.4390 17 6 4.0830 -3.7079 1.2941 18 7 3.5859 -3.7392 0.0920 19 6 4.3321 -4.5618 -0.6892 20 6 4.2521 -4.9517 -2.0289 21 6 5.1847 -5.8240 -2.5438 22 17 5.0845 -6.3086 -4.2077 23 6 6.2043 -6.3200 -1.7416 24 6 6.2971 -5.9453 -0.4187 25 6 5.3662 -5.0658 0.1172 26 7 5.1812 -4.5073 1.3668 27 1 5.7324 -4.6570 2.1508 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -1.7197 1.2951 36 1 1.7516 -0.1583 2.1369 37 1 3.9999 0.1677 1.1516 38 1 3.8535 -1.3858 0.2952 39 1 2.6555 -0.5712 3.6184 40 1 3.9829 -1.3903 4.4759 41 1 3.2309 1.8122 6.2774 42 1 2.4361 -2.8756 2.3661 43 1 3.8123 -3.3656 3.3830 44 1 3.4615 -4.5701 -2.6581 45 1 6.9294 -7.0040 -2.1575 46 1 7.0896 -6.3382 0.2009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097164356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:14 Heat of formation + Delta-G solvation = 50.758678 kcal Electronic energy + Delta-G solvation = -26636.287835 eV Core-core repulsion = 22972.744327 eV Total energy + Delta-G solvation = -3663.543508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.146 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.16291 -38.21159 -37.48324 -36.14780 -35.00811 -33.18231 -32.65026 -30.14188 -30.01052 -28.42781 -27.51315 -26.72122 -25.11227 -23.34162 -22.53548 -22.23171 -21.00850 -20.06747 -19.12918 -17.86709 -17.42391 -16.35267 -15.80269 -15.61934 -15.14879 -14.74846 -14.67225 -14.54490 -14.13772 -13.89898 -13.61616 -13.25700 -13.00720 -12.94744 -12.68638 -12.31224 -12.16513 -11.97489 -11.82457 -11.52393 -11.32202 -11.20928 -11.11212 -11.00556 -10.82957 -10.76645 -10.67593 -10.46756 -10.36348 -10.16675 -9.98313 -9.89573 -9.63067 -9.29071 -8.49880 -8.33326 -8.24361 -7.32876 -6.08945 -4.09642 0.78260 1.21593 1.99597 2.72338 2.91665 3.26901 3.35266 3.39832 3.65050 4.15248 4.38256 4.50758 4.84217 4.97301 5.09101 5.15928 5.22076 5.27828 5.32851 5.37234 5.38921 5.45984 5.58545 5.79309 5.83380 5.96401 5.99125 6.07187 6.11839 6.18496 6.20592 6.27427 6.28237 6.32712 6.39666 6.58556 6.60515 6.64252 6.69114 6.87103 7.04043 7.20459 7.30375 7.36737 7.72043 7.90152 7.97548 8.07695 8.42412 8.98054 9.54775 11.01638 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002965 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.083337 B = 9439.976607 C =10556.351409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.146 4.146 5 C 0.064 3.936 6 N -0.531 5.531 7 C 0.190 3.810 8 C -0.502 4.502 9 H 0.063 0.937 10 C 0.058 3.942 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.115 3.885 17 C 0.328 3.672 18 N -0.488 5.488 19 C 0.063 3.937 20 C -0.056 4.056 21 C -0.045 4.045 22 Cl -0.074 7.074 23 C -0.104 4.104 24 C -0.094 4.094 25 C 0.045 3.955 26 N -0.589 5.589 27 H 0.426 0.574 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.009 0.991 40 H 0.025 0.975 41 H 0.261 0.739 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 -13.601 -12.455 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.184 4.184 5 C -0.064 4.064 6 N -0.255 5.255 7 C 0.065 3.935 8 C -0.541 4.541 9 H 0.081 0.919 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.015 4.015 17 C 0.061 3.939 18 N -0.208 5.208 19 C -0.056 4.056 20 C -0.077 4.077 21 C -0.074 4.074 22 Cl -0.045 7.045 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.066 4.066 26 N -0.199 5.199 27 H 0.265 0.735 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.176 -13.146 -12.769 18.364 hybrid contribution 0.604 0.427 0.769 1.067 sum 1.780 -12.718 -11.999 17.576 Atomic orbital electron populations 1.21824 0.96152 1.01076 1.01066 1.20959 0.94838 0.96240 0.98579 1.21863 1.01539 0.96014 1.00921 1.22182 0.98300 0.99826 0.98140 1.22143 0.92335 0.99627 0.92325 1.62446 1.57948 0.99224 1.05878 1.19831 0.95962 0.92838 0.84825 1.21101 1.21280 1.01314 1.10423 0.91901 1.24938 0.95414 0.98422 0.95589 1.69954 1.33795 1.36000 1.13957 0.86501 0.79924 0.83424 0.77969 1.19654 1.21065 1.21092 1.20712 0.98254 0.91137 0.91423 1.23905 0.84427 0.90650 0.94943 1.70559 1.29043 1.20575 1.00666 1.18890 0.94184 0.98472 0.94064 1.19984 0.98675 0.96544 0.92457 1.20369 0.99092 1.01901 0.86060 1.98355 1.98085 1.90888 1.17153 1.20626 0.98094 1.01214 0.92477 1.19827 0.98457 0.98224 0.94977 1.18942 1.00154 1.00883 0.86612 1.43168 1.26561 1.39375 1.10800 0.73493 0.92904 0.93475 0.93166 0.91786 0.92272 0.93855 0.92525 0.92637 0.90928 0.89976 0.91971 0.97320 0.95715 0.92971 0.91107 0.89316 0.84436 0.84516 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 37.16 0.34 -1.65 16 2 C -0.09 -1.35 2.92 -90.62 -0.26 -1.61 16 3 C -0.15 -2.28 8.95 37.16 0.33 -1.95 16 4 C -0.15 -2.56 4.03 -26.73 -0.11 -2.67 16 5 C 0.06 1.21 4.71 -3.83 -0.02 1.19 16 6 N -0.53 -10.43 4.68 -237.52 -1.11 -11.54 16 7 C 0.19 4.48 4.53 -4.98 -0.02 4.46 16 8 C -0.50 -13.23 8.40 -34.44 -0.29 -13.52 16 9 H 0.06 1.68 7.38 -52.49 -0.39 1.29 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -25.36 13.29 55.43 0.74 -24.63 16 12 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.11 1.86 5.38 -4.97 -0.03 1.83 16 17 C 0.33 5.03 6.86 -154.83 -1.06 3.96 16 18 N -0.49 -7.98 10.13 -8.24 -0.08 -8.06 16 19 C 0.06 0.94 7.23 -84.70 -0.61 0.33 16 20 C -0.06 -0.73 9.86 -39.21 -0.39 -1.12 16 21 C -0.05 -0.51 6.31 -39.54 -0.25 -0.76 16 22 Cl -0.07 -0.74 28.94 -51.86 -1.50 -2.24 16 23 C -0.10 -1.03 9.80 -39.50 -0.39 -1.42 16 24 C -0.09 -0.97 10.06 -39.52 -0.40 -1.37 16 25 C 0.05 0.59 7.30 -83.97 -0.61 -0.02 16 26 N -0.59 -7.54 6.23 -8.00 -0.05 -7.59 16 27 H 0.43 4.25 8.96 -40.82 -0.37 3.89 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.97 6.58 -51.93 -0.34 0.62 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.96 6.29 -51.93 -0.33 0.63 16 36 H 0.07 1.47 6.33 -51.93 -0.33 1.15 16 37 H 0.08 1.72 5.43 -51.93 -0.28 1.44 16 38 H 0.06 1.17 6.39 -51.93 -0.33 0.84 16 39 H 0.01 0.23 6.03 -51.93 -0.31 -0.09 16 40 H 0.02 0.62 7.91 -51.93 -0.41 0.21 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.07 1.15 6.05 -51.93 -0.31 0.84 16 43 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 44 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 45 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -28.97 381.72 -11.89 -40.86 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.75 Total: 4.33 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -3.86 Total: -12.85 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.51 Total: -51.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.97 -11.89 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097164356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.621 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds