Wall clock time and date at job start Tue Mar 31 2020 04:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00227 * 2 1 4 4 H 1.48499 * 109.47127 * 240.00169 * 3 2 1 5 5 H 1.48498 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47057 * 120.00560 * 3 2 1 7 7 C 1.37881 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00369 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99874 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47238 * 179.97438 * 9 7 2 11 11 N 1.40068 * 125.87609 * 269.97861 * 10 9 7 12 12 C 1.30257 * 109.69832 * 180.02562 * 11 10 9 13 13 C 1.41159 * 108.46948 * 359.97438 * 12 11 10 14 14 C 1.36318 * 125.87648 * 89.99538 * 10 9 7 15 15 N 1.33195 * 134.61132 * 359.97438 * 14 10 9 16 16 C 1.31519 * 120.68164 * 179.97438 * 15 14 10 17 17 N 1.32120 * 122.64438 * 359.69285 * 16 15 14 18 18 C 1.32874 * 121.19479 * 0.59726 * 17 16 15 19 19 N 1.38217 * 120.81048 * 179.71956 * 18 17 16 20 20 C 1.39783 * 119.99966 * 5.49696 * 19 18 17 21 21 C 1.38934 * 120.11394 * 34.93908 * 20 19 18 22 22 C 1.37958 * 119.85910 * 180.02562 * 21 20 19 23 23 C 1.38578 * 120.31981 * 0.02562 * 22 21 20 24 24 C 1.38292 * 119.95921 * 359.97438 * 23 22 21 25 25 C 1.38373 * 119.92888 * 359.71423 * 24 23 22 26 26 C 1.51387 * 109.74971 * 180.02562 * 24 23 22 27 27 C 1.54333 * 105.17398 * 17.20711 * 26 24 23 28 28 C 1.51389 * 130.30711 * 180.02562 * 23 22 21 29 29 H 0.97003 * 119.99778 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47370 * 60.00444 * 9 7 2 31 31 H 1.09000 * 109.47553 * 299.99530 * 9 7 2 32 32 H 1.07993 * 125.76327 * 180.02562 * 12 11 10 33 33 H 1.08001 * 118.67528 * 180.02562 * 16 15 14 34 34 H 0.96992 * 119.99718 * 185.21507 * 19 18 17 35 35 H 1.07997 * 120.06678 * 359.97438 * 21 20 19 36 36 H 1.08003 * 119.84167 * 180.02562 * 22 21 20 37 37 H 1.08003 * 119.92482 * 180.27761 * 25 24 23 38 38 H 1.09004 * 110.30288 * 136.13434 * 26 24 23 39 39 H 1.09005 * 110.29730 * 258.18556 * 26 24 23 40 40 H 1.08998 * 110.82172 * 91.84017 * 27 26 24 41 41 H 1.08995 * 110.82301 * 215.20184 * 27 26 24 42 42 H 1.09001 * 110.30562 * 281.68625 * 28 23 22 43 43 H 1.09000 * 110.30355 * 43.84088 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 7 2.7349 -4.2365 -1.1374 12 6 3.5477 -5.1878 -0.7755 13 6 3.5861 -5.2309 0.6349 14 6 2.7228 -4.2204 1.1021 15 7 2.5812 -4.0534 2.4159 16 6 3.2342 -4.8178 3.2639 17 7 4.0487 -5.7818 2.8730 18 6 4.2608 -6.0230 1.5837 19 7 5.1191 -7.0298 1.1836 20 6 5.6870 -7.8828 2.1343 21 6 4.9609 -8.2557 3.2585 22 6 5.5268 -9.0974 4.1937 23 6 6.8166 -9.5726 4.0175 24 6 7.5419 -9.2033 2.8996 25 6 6.9762 -8.3644 1.9556 26 6 8.9099 -9.8504 2.9406 27 6 8.7852 -10.9939 3.9696 28 6 7.6481 -10.4933 4.8852 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5572 0.8897 32 1 4.0997 -5.8339 -1.4420 33 1 3.0949 -4.6543 4.3223 34 1 5.3240 -7.1470 0.2429 35 1 3.9558 -7.8868 3.4004 36 1 4.9619 -9.3874 5.0673 37 1 7.5412 -8.0796 1.0803 38 1 9.1687 -10.2504 1.9601 39 1 9.6601 -9.1287 3.2640 40 1 8.5057 -11.9268 3.4801 41 1 9.7127 -11.1144 4.5291 42 1 8.0590 -9.9451 5.7330 43 1 7.0452 -11.3323 5.2326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:31 Heat of formation + Delta-G solvation = 143.540099 kcal Electronic energy + Delta-G solvation = -26993.290227 eV Core-core repulsion = 23232.662530 eV Total energy + Delta-G solvation = -3760.627697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.144 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.56975 -40.31624 -38.65545 -37.18315 -34.70913 -33.69880 -32.39422 -31.46570 -31.21555 -29.83162 -28.30719 -27.38754 -26.92423 -24.13434 -23.68118 -22.90309 -22.40321 -21.06500 -21.01423 -19.89587 -18.15467 -17.70710 -16.75784 -16.58284 -16.26966 -15.87485 -15.79710 -15.35495 -14.92557 -14.67501 -14.24260 -13.97685 -13.69245 -13.46814 -13.44004 -13.27832 -13.13495 -12.87361 -12.21950 -12.10614 -11.92302 -11.70217 -11.62615 -11.44747 -11.15086 -11.02816 -11.00779 -10.91746 -10.78060 -10.31491 -10.18089 -10.02083 -9.62632 -8.91389 -8.76495 -8.65051 -8.61789 -8.12454 -7.53046 -6.24315 -4.31130 0.93234 1.33180 1.44745 1.86144 2.79416 2.92170 3.01011 3.25008 3.28166 3.32925 3.67369 4.22586 4.26461 4.32007 4.34589 4.46212 4.65584 4.70679 4.78824 4.90654 4.92781 5.00543 5.08890 5.11143 5.31240 5.35169 5.42936 5.44767 5.51490 5.53744 5.61092 5.69929 5.79887 5.88990 5.96785 6.23348 6.28853 6.32235 6.55422 6.58943 6.75869 6.96274 7.01005 7.04187 7.19177 7.42308 7.67367 7.82273 7.87663 8.13490 8.65371 8.73863 9.33984 10.83867 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025594 B = 0.002256 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.758331 B =12407.233905 C =12516.737752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.330 5.330 11 N -0.237 5.237 12 C 0.067 3.933 13 C -0.329 4.329 14 C 0.363 3.637 15 N -0.546 5.546 16 C 0.363 3.637 17 N -0.603 5.603 18 C 0.500 3.500 19 N -0.647 5.647 20 C 0.167 3.833 21 C -0.108 4.108 22 C -0.088 4.088 23 C -0.121 4.121 24 C -0.081 4.081 25 C -0.140 4.140 26 C -0.081 4.081 27 C -0.120 4.120 28 C -0.079 4.079 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.198 0.802 34 H 0.419 0.581 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.944 -22.201 6.904 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.117 5.117 11 N -0.053 5.053 12 C -0.128 4.128 13 C -0.346 4.346 14 C 0.115 3.885 15 N -0.269 5.269 16 C 0.070 3.930 17 N -0.332 5.332 18 C 0.250 3.750 19 N -0.272 5.272 20 C 0.072 3.928 21 C -0.129 4.129 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.082 4.082 25 C -0.161 4.161 26 C -0.118 4.118 27 C -0.158 4.158 28 C -0.116 4.116 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.201 0.799 33 H 0.214 0.786 34 H 0.257 0.743 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.866 -21.047 6.829 26.113 hybrid contribution 0.932 0.614 -0.625 1.279 sum 14.798 -20.433 6.204 25.981 Atomic orbital electron populations 1.69906 1.06000 1.27798 1.49116 1.24898 0.94999 0.99374 0.94385 0.86393 0.79443 0.81821 0.78888 1.20005 1.20853 1.19949 1.21191 0.93499 0.89642 1.53045 0.92102 1.19827 0.85643 0.79770 1.00090 1.49511 1.35756 1.27692 0.98699 1.76964 1.11232 1.07782 1.09333 1.23406 0.99244 0.97970 0.92201 1.19593 1.11787 1.07862 0.95384 1.18948 0.91113 0.89893 0.88562 1.67533 1.29099 1.30303 1.00005 1.24516 0.85323 0.83850 0.99345 1.68101 1.25784 1.25076 1.14227 1.17867 0.84677 0.83969 0.88524 1.41754 1.46644 1.29832 1.09019 1.17463 0.91602 0.92302 0.91476 1.21037 1.00794 0.97015 0.94039 1.20461 0.94054 0.97195 0.98963 1.20511 0.94658 1.00289 0.96718 1.20230 0.96064 0.97351 0.94563 1.20233 0.93153 1.01803 1.00892 1.21026 0.93800 0.96969 0.99966 1.22282 0.98576 0.98017 0.96921 1.20986 0.95564 0.97608 0.97419 0.92162 0.92702 0.92169 0.79870 0.78560 0.74328 0.84383 0.86136 0.86194 0.90895 0.90305 0.91070 0.90719 0.90501 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.54 -15.19 9.39 -34.44 -0.32 -15.51 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.26 6.96 6.19 -5.19 -0.03 6.93 16 10 N -0.33 -7.79 3.63 -61.64 -0.22 -8.01 16 11 N -0.24 -4.98 12.45 30.80 0.38 -4.60 16 12 C 0.07 1.10 11.88 -17.11 -0.20 0.90 16 13 C -0.33 -5.84 6.14 -106.82 -0.66 -6.50 16 14 C 0.36 7.87 8.04 -156.23 -1.26 6.62 16 15 N -0.55 -11.28 10.47 -13.96 -0.15 -11.43 16 16 C 0.36 5.97 12.24 -92.11 -1.13 4.85 16 17 N -0.60 -9.51 7.39 -13.59 -0.10 -9.61 16 18 C 0.50 7.72 7.26 -154.74 -1.12 6.59 16 19 N -0.65 -7.69 5.46 -9.69 -0.05 -7.74 16 20 C 0.17 1.97 6.27 -83.78 -0.53 1.44 16 21 C -0.11 -1.30 8.60 -39.43 -0.34 -1.64 16 22 C -0.09 -0.92 10.03 -39.56 -0.40 -1.32 16 23 C -0.12 -1.18 6.14 -104.14 -0.64 -1.82 16 24 C -0.08 -0.79 6.13 -104.21 -0.64 -1.43 16 25 C -0.14 -1.44 9.96 -39.33 -0.39 -1.84 16 26 C -0.08 -0.57 6.77 -26.85 -0.18 -0.75 16 27 C -0.12 -0.72 7.08 -25.33 -0.18 -0.90 16 28 C -0.08 -0.56 6.77 -26.84 -0.18 -0.74 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.20 2.43 8.06 -52.49 -0.42 2.01 16 34 H 0.42 3.79 8.70 -40.82 -0.36 3.44 16 35 H 0.14 1.80 6.43 -52.49 -0.34 1.46 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -32.86 366.50 -12.51 -45.37 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.31 Total: 2.10 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -8.29 Total: -3.34 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.60 Total: -66.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.86 -12.51 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.905 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds