Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48504 * 109.47377 * 269.99816 * 3 2 1 5 5 H 1.48505 * 109.47046 * 29.99672 * 3 2 1 6 6 H 1.48499 * 109.47416 * 149.99552 * 3 2 1 7 7 C 1.37874 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47484 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47155 * 179.97438 * 21 20 19 23 23 C 1.50701 * 109.46741 * 180.02562 * 22 21 20 24 24 C 1.38244 * 120.00019 * 269.72828 * 23 22 21 25 25 C 1.38234 * 120.00005 * 179.77048 * 24 23 22 26 26 C 1.38236 * 119.99567 * 0.50309 * 25 24 23 27 27 C 1.38230 * 120.00732 * 359.74933 * 26 25 24 28 28 C 1.38233 * 120.00320 * 90.00557 * 23 22 21 29 29 H 0.96999 * 120.00033 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 31 31 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 32 32 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 33 33 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 34 34 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47529 * 300.00389 * 20 19 18 36 36 H 1.09003 * 109.46889 * 59.99897 * 20 19 18 37 37 H 1.08997 * 109.47189 * 300.00762 * 21 20 19 38 38 H 1.08999 * 109.46538 * 60.00232 * 21 20 19 39 39 H 1.08994 * 109.47269 * 300.00417 * 22 21 20 40 40 H 1.08999 * 109.47153 * 60.00676 * 22 21 20 41 41 H 1.08000 * 119.99450 * 359.97438 * 24 23 22 42 42 H 1.07998 * 119.99803 * 180.23085 * 25 24 23 43 43 H 1.08003 * 119.99665 * 179.72789 * 26 25 24 44 44 H 1.07998 * 120.00560 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99669 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7411 -4.2325 -1.1344 12 6 3.5499 -5.1868 -0.7715 13 6 3.5863 -5.2299 0.6391 14 6 2.7220 -4.2198 1.1051 15 7 2.5792 -4.0524 2.4188 16 6 3.2323 -4.8157 3.2675 17 7 4.0523 -5.7756 2.8777 18 6 4.2614 -6.0207 1.5888 19 7 5.1206 -7.0257 1.1901 20 6 5.8142 -7.8372 2.1933 21 6 6.6972 -8.8710 1.4914 22 6 7.4221 -9.7181 2.5392 23 6 8.2923 -10.7358 1.8478 24 6 7.7833 -11.9827 1.5360 25 6 8.5800 -12.9146 0.8975 26 6 9.8889 -12.6032 0.5802 27 6 10.3996 -11.3582 0.8966 28 6 9.6012 -10.4246 1.5305 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8902 32 1 4.1029 -5.8330 -1.4371 33 1 3.0926 -4.6514 4.3258 34 1 5.2649 -7.1942 0.2458 35 1 6.4340 -7.1929 2.8167 36 1 5.0810 -8.3494 2.8164 37 1 6.0772 -9.5153 0.8682 38 1 7.4304 -8.3591 0.8681 39 1 8.0422 -9.0734 3.1620 40 1 6.6892 -10.2299 3.1629 41 1 6.7621 -12.2275 1.7883 42 1 8.1812 -13.8874 0.6506 43 1 10.5128 -13.3328 0.0853 44 1 11.4223 -11.1151 0.6490 45 1 10.0001 -9.4519 1.7777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = 127.238626 kcal Electronic energy + Delta-G solvation = -26586.539609 eV Core-core repulsion = 22797.893549 eV Total energy + Delta-G solvation = -3788.646061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35332 -39.70296 -38.49097 -36.89508 -34.67164 -33.65791 -32.25740 -31.27736 -31.25636 -30.71702 -29.06396 -27.25890 -25.90386 -23.94150 -23.38291 -22.94647 -22.66744 -21.85211 -21.22244 -20.01864 -17.83667 -17.45187 -17.04283 -16.65742 -16.27655 -16.09940 -15.68402 -15.25642 -15.09032 -14.76809 -14.52281 -14.16870 -13.79215 -13.74175 -13.67217 -13.44110 -13.32194 -13.15092 -12.68051 -12.28450 -12.13706 -11.94810 -11.64388 -11.62220 -11.25817 -11.19181 -11.07136 -10.95995 -10.82679 -10.74207 -10.27359 -10.06818 -9.81428 -9.29434 -9.23208 -9.07435 -8.65532 -8.58201 -8.19724 -7.61195 -6.20630 -4.27015 0.97331 1.02792 1.33192 1.96731 2.95504 3.05304 3.14620 3.25295 3.30803 3.37027 3.42902 4.26881 4.32420 4.41520 4.43665 4.58599 4.64663 4.71078 4.74418 4.76558 4.86439 4.91504 5.03910 5.09604 5.14823 5.14883 5.22608 5.31452 5.35072 5.49253 5.60118 5.66110 5.68935 5.73806 5.81006 5.89865 6.09626 6.14981 6.26682 6.34685 6.63589 6.70241 6.94467 7.04702 7.12340 7.27195 7.52424 7.73817 7.92033 7.94690 8.24989 8.73442 8.85084 9.37910 10.87592 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.001776 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.555989 B =15765.648276 C =15940.991329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.244 5.244 12 C 0.068 3.932 13 C -0.339 4.339 14 C 0.363 3.637 15 N -0.555 5.555 16 C 0.366 3.634 17 N -0.618 5.618 18 C 0.509 3.491 19 N -0.708 5.708 20 C 0.132 3.868 21 C -0.127 4.127 22 C -0.077 4.077 23 C -0.080 4.080 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.117 4.117 29 H 0.268 0.732 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.182 0.818 33 H 0.195 0.805 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.507 -24.958 3.902 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.119 5.119 11 N -0.059 5.059 12 C -0.127 4.127 13 C -0.357 4.357 14 C 0.115 3.885 15 N -0.280 5.280 16 C 0.072 3.928 17 N -0.349 5.349 18 C 0.256 3.744 19 N -0.341 5.341 20 C 0.008 3.992 21 C -0.165 4.165 22 C -0.115 4.115 23 C -0.080 4.080 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.135 4.135 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.199 0.801 33 H 0.211 0.789 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.530 -23.894 3.894 29.314 hybrid contribution 0.978 0.356 -0.612 1.207 sum 17.508 -23.537 3.283 29.518 Atomic orbital electron populations 1.69918 1.05995 1.27611 1.49382 1.24896 0.94984 0.99352 0.94463 0.86341 0.79720 0.82231 0.78272 1.20367 1.20796 1.19771 1.21252 0.93547 0.89696 1.52680 0.92064 1.19796 0.85694 0.79871 0.99988 1.49455 1.35724 1.27886 0.98802 1.76937 1.11500 1.08121 1.09391 1.23361 0.99177 0.97817 0.92334 1.19626 1.12688 1.07996 0.95342 1.18939 0.91068 0.89947 0.88531 1.67517 1.29606 1.30844 0.99992 1.24413 0.85166 0.84001 0.99178 1.67943 1.26753 1.25693 1.14548 1.17903 0.84176 0.84113 0.88207 1.44302 1.46309 1.34345 1.09189 1.21303 0.94989 0.92137 0.90805 1.21790 0.98891 0.97300 0.98536 1.20502 0.97992 0.95917 0.97099 1.19899 0.94477 0.94924 0.98691 1.21097 0.99891 0.93352 0.99184 1.21166 0.94284 0.99462 0.98808 1.21163 0.95811 0.96970 1.00545 1.21169 0.99844 0.93877 0.98813 1.21100 0.93692 0.99550 0.99169 0.92276 0.92821 0.92225 0.80118 0.78875 0.75507 0.91387 0.91401 0.91110 0.91104 0.90439 0.90444 0.86022 0.86143 0.86256 0.86136 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.36 9.39 -34.44 -0.32 -15.68 16 8 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.26 7.10 6.19 -5.19 -0.03 7.06 16 10 N -0.33 -8.04 3.63 -61.64 -0.22 -8.26 16 11 N -0.24 -5.26 12.45 30.80 0.38 -4.88 16 12 C 0.07 1.16 11.87 -17.11 -0.20 0.96 16 13 C -0.34 -6.21 6.14 -106.82 -0.66 -6.86 16 14 C 0.36 8.10 8.04 -156.24 -1.26 6.85 16 15 N -0.55 -11.82 10.47 -13.97 -0.15 -11.97 16 16 C 0.37 6.21 12.24 -92.11 -1.13 5.08 16 17 N -0.62 -9.89 9.69 -13.62 -0.13 -10.02 16 18 C 0.51 7.88 7.55 -154.85 -1.17 6.71 16 19 N -0.71 -7.68 5.68 -60.09 -0.34 -8.03 16 20 C 0.13 1.13 5.73 -4.04 -0.02 1.11 16 21 C -0.13 -0.79 5.31 -26.73 -0.14 -0.94 16 22 C -0.08 -0.45 5.35 -27.88 -0.15 -0.60 16 23 C -0.08 -0.55 5.13 -104.62 -0.54 -1.09 16 24 C -0.12 -0.80 9.70 -39.58 -0.38 -1.18 16 25 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 26 C -0.13 -0.82 10.05 -39.58 -0.40 -1.22 16 27 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 28 C -0.12 -0.81 9.70 -39.58 -0.38 -1.19 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 30 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 33 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.41 3.55 8.34 -40.82 -0.34 3.21 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -33.97 389.90 -12.77 -46.74 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.22 Total: 0.45 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -7.68 Total: -1.56 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: 0.28 Total: -68.33 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.97 -12.77 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.977 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds