Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48504 * 109.47377 * 269.99816 * 3 2 1 5 5 H 1.48505 * 109.47046 * 29.99672 * 3 2 1 6 6 H 1.48499 * 109.47416 * 149.99552 * 3 2 1 7 7 C 1.37874 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47484 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47155 * 179.97438 * 21 20 19 23 23 C 1.50701 * 109.46741 * 180.02562 * 22 21 20 24 24 C 1.38244 * 120.00019 * 269.72828 * 23 22 21 25 25 C 1.38234 * 120.00005 * 179.77048 * 24 23 22 26 26 C 1.38236 * 119.99567 * 0.50309 * 25 24 23 27 27 C 1.38230 * 120.00732 * 359.74933 * 26 25 24 28 28 C 1.38233 * 120.00320 * 90.00557 * 23 22 21 29 29 H 0.96999 * 120.00033 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 31 31 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 32 32 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 33 33 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 34 34 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47529 * 300.00389 * 20 19 18 36 36 H 1.09003 * 109.46889 * 59.99897 * 20 19 18 37 37 H 1.08997 * 109.47189 * 300.00762 * 21 20 19 38 38 H 1.08999 * 109.46538 * 60.00232 * 21 20 19 39 39 H 1.08994 * 109.47269 * 300.00417 * 22 21 20 40 40 H 1.08999 * 109.47153 * 60.00676 * 22 21 20 41 41 H 1.08000 * 119.99450 * 359.97438 * 24 23 22 42 42 H 1.07998 * 119.99803 * 180.23085 * 25 24 23 43 43 H 1.08003 * 119.99665 * 179.72789 * 26 25 24 44 44 H 1.07998 * 120.00560 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99669 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7411 -4.2325 -1.1344 12 6 3.5499 -5.1868 -0.7715 13 6 3.5863 -5.2299 0.6391 14 6 2.7220 -4.2198 1.1051 15 7 2.5792 -4.0524 2.4188 16 6 3.2323 -4.8157 3.2675 17 7 4.0523 -5.7756 2.8777 18 6 4.2614 -6.0207 1.5888 19 7 5.1206 -7.0257 1.1901 20 6 5.8142 -7.8372 2.1933 21 6 6.6972 -8.8710 1.4914 22 6 7.4221 -9.7181 2.5392 23 6 8.2923 -10.7358 1.8478 24 6 7.7833 -11.9827 1.5360 25 6 8.5800 -12.9146 0.8975 26 6 9.8889 -12.6032 0.5802 27 6 10.3996 -11.3582 0.8966 28 6 9.6012 -10.4246 1.5305 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8902 32 1 4.1029 -5.8330 -1.4371 33 1 3.0926 -4.6514 4.3258 34 1 5.2649 -7.1942 0.2458 35 1 6.4340 -7.1929 2.8167 36 1 5.0810 -8.3494 2.8164 37 1 6.0772 -9.5153 0.8682 38 1 7.4304 -8.3591 0.8681 39 1 8.0422 -9.0734 3.1620 40 1 6.6892 -10.2299 3.1629 41 1 6.7621 -12.2275 1.7883 42 1 8.1812 -13.8874 0.6506 43 1 10.5128 -13.3328 0.0853 44 1 11.4223 -11.1151 0.6490 45 1 10.0001 -9.4519 1.7777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = 108.986635 kcal Electronic energy + Delta-G solvation = -26587.331075 eV Core-core repulsion = 22797.893549 eV Total energy + Delta-G solvation = -3789.437527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -42.80143 -40.17803 -39.84146 -37.88166 -35.84349 -35.28085 -33.65369 -32.89521 -31.70957 -31.70242 -30.11704 -29.15076 -26.71902 -25.52261 -24.98249 -23.82937 -23.39856 -22.80197 -21.81820 -21.38918 -19.30592 -18.80217 -18.64963 -17.63981 -17.56596 -16.83701 -16.80098 -16.44602 -16.23879 -15.78628 -15.59309 -15.33920 -15.06111 -14.90936 -14.79321 -14.22426 -14.21857 -14.02839 -13.78828 -13.65867 -13.50520 -13.04498 -12.82602 -12.74019 -12.50522 -12.46356 -12.35688 -12.29234 -11.95705 -11.77854 -11.67771 -11.50772 -11.49716 -10.75939 -10.58860 -10.06258 -9.76364 -9.75794 -9.53909 -8.96608 -8.35546 -6.52654 -0.02461 0.50365 0.54051 0.56032 1.32683 1.35908 1.39981 1.49875 1.64120 2.06511 2.31620 2.94010 2.94282 3.02576 3.28702 3.40904 3.66320 3.75436 3.86049 3.98633 4.10757 4.21260 4.21978 4.29804 4.37844 4.42194 4.47553 4.59794 4.70577 4.79994 4.83415 4.85591 4.86667 4.94724 5.15819 5.17934 5.22637 5.28948 5.38197 5.47566 5.56108 5.64324 5.69545 5.76488 5.78084 5.79972 5.99253 6.14514 6.19771 6.52964 6.59749 6.80788 7.16843 7.46951 8.72068 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.001776 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.555989 B =15765.648276 C =15940.991329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.284 3.716 10 N -0.367 5.367 11 N -0.291 5.291 12 C 0.100 3.900 13 C -0.348 4.348 14 C 0.336 3.664 15 N -0.606 5.606 16 C 0.376 3.624 17 N -0.615 5.615 18 C 0.516 3.484 19 N -0.684 5.684 20 C 0.131 3.869 21 C -0.114 4.114 22 C -0.073 4.073 23 C -0.089 4.089 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.130 4.130 29 H 0.274 0.726 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.240 0.760 33 H 0.231 0.769 34 H 0.422 0.578 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.985 -26.524 4.133 33.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.165 3.835 10 N -0.153 5.153 11 N -0.106 5.106 12 C -0.094 4.094 13 C -0.366 4.366 14 C 0.089 3.911 15 N -0.334 5.334 16 C 0.083 3.917 17 N -0.346 5.346 18 C 0.261 3.739 19 N -0.316 5.316 20 C 0.008 3.992 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.089 4.089 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.256 0.744 33 H 0.247 0.753 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.058 -25.537 4.108 32.128 hybrid contribution 0.350 0.582 -0.589 0.899 sum 19.408 -24.955 3.519 31.809 Atomic orbital electron populations 1.70013 1.07373 1.28895 1.49441 1.25803 0.95924 1.02871 0.93557 0.85293 0.78221 0.77741 0.78804 1.19189 1.19345 1.19888 1.21388 0.92865 0.91203 1.53606 0.93646 1.19120 0.85970 0.80932 0.97436 1.49093 1.37130 1.28650 1.00448 1.76886 1.14140 1.10461 1.09121 1.24273 0.96566 0.95937 0.92656 1.19772 1.12752 1.07827 0.96206 1.19373 0.91948 0.90959 0.88824 1.67530 1.32170 1.33375 1.00279 1.25184 0.83566 0.82773 1.00161 1.68100 1.26620 1.25389 1.14525 1.18028 0.83994 0.84310 0.87526 1.44457 1.44076 1.32350 1.10706 1.21459 0.95034 0.92197 0.90478 1.21674 0.98492 0.96604 0.98453 1.20470 0.97998 0.95720 0.96922 1.20034 0.94690 0.95241 0.98895 1.21324 1.00549 0.93515 0.99321 1.21437 0.94472 1.00176 0.98719 1.21441 0.96159 0.97380 1.00594 1.21432 1.00618 0.94017 0.98777 1.21319 0.93957 1.00132 0.99389 0.91692 0.95110 0.94945 0.74429 0.75348 0.73884 0.91582 0.91358 0.90557 0.90740 0.90042 0.89896 0.85026 0.84783 0.84828 0.84862 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 2 C 0.02 1.11 5.46 84.65 0.46 1.57 16 3 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.55 -33.28 9.39 25.60 0.24 -33.04 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 9 C 0.28 16.38 6.19 85.63 0.53 16.91 16 10 N -0.37 -18.60 3.63 -348.92 -1.27 -19.87 16 11 N -0.29 -12.80 12.45 -56.46 -0.70 -13.50 16 12 C 0.10 3.27 11.87 85.65 1.02 4.28 16 13 C -0.35 -12.38 6.14 -21.29 -0.13 -12.51 16 14 C 0.34 15.37 8.04 134.15 1.08 16.45 16 15 N -0.61 -26.44 10.47 -198.10 -2.07 -28.52 16 16 C 0.38 12.41 12.24 180.87 2.21 14.63 16 17 N -0.62 -18.43 9.69 -197.01 -1.91 -20.34 16 18 C 0.52 14.79 7.55 133.64 1.01 15.80 16 19 N -0.68 -12.43 5.68 -344.01 -1.95 -14.39 16 20 C 0.13 1.81 5.73 86.38 0.50 2.31 16 21 C -0.11 -1.04 5.31 30.59 0.16 -0.88 16 22 C -0.07 -0.65 5.35 29.85 0.16 -0.49 16 23 C -0.09 -1.03 5.13 -19.86 -0.10 -1.13 16 24 C -0.13 -1.50 9.70 22.27 0.22 -1.29 16 25 C -0.13 -1.48 10.05 22.27 0.22 -1.25 16 26 C -0.14 -1.56 10.05 22.27 0.22 -1.33 16 27 C -0.13 -1.51 10.05 22.27 0.22 -1.29 16 28 C -0.13 -1.55 9.70 22.27 0.22 -1.33 16 29 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.03 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.24 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.23 5.47 8.06 -2.91 -0.02 5.45 16 34 H 0.42 5.51 8.34 -92.71 -0.77 4.73 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 40 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 41 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.13 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.13 1.01 8.06 -2.91 -0.02 0.98 16 44 H 0.13 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -78.00 389.90 2.88 -75.12 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.24 Total: 11.37 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 8.24 Total: 17.41 kcal Atomic # 7 Polarization: -143.67 SS G_CDS: -7.62 Total: -151.30 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -78.00 2.88 -75.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.110 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds