Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99490 * 2 1 4 4 C 1.38216 * 119.99826 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00200 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99585 * 359.70073 * 5 4 3 7 7 C 1.38210 * 120.00302 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00088 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47491 * 84.99487 * 8 7 2 10 10 N 1.46498 * 109.47059 * 179.97438 * 9 8 7 11 11 C 1.38109 * 119.99599 * 179.72256 * 10 9 8 12 12 N 1.32860 * 120.81584 * 0.02562 * 11 10 9 13 13 C 1.32129 * 121.19076 * 179.69432 * 12 11 10 14 14 N 1.31501 * 122.64905 * 0.63590 * 13 12 11 15 15 C 1.33201 * 120.68151 * 359.66501 * 14 13 12 16 16 C 1.40815 * 120.81034 * 180.27649 * 11 10 9 17 17 C 1.41173 * 134.70172 * 0.02562 * 16 11 10 18 18 N 1.30251 * 108.46812 * 179.97438 * 17 16 11 19 19 N 1.36309 * 134.61304 * 180.02562 * 15 14 13 20 20 C 1.46499 * 125.87332 * 0.02562 * 19 15 14 21 21 C 1.50702 * 109.47335 * 90.00123 * 20 19 15 22 22 H 1.07997 * 119.99759 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99981 * 180.02562 * 21 20 19 24 24 N 1.31507 * 119.99995 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99820 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47282 * 59.99812 * 25 23 21 27 27 H 1.48498 * 109.47050 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47228 * 299.99937 * 25 23 21 29 29 H 1.08997 * 109.46888 * 270.01852 * 1 2 3 30 30 H 1.08992 * 109.47427 * 30.02256 * 1 2 3 31 31 H 1.09004 * 109.46678 * 150.02138 * 1 2 3 32 32 H 1.08002 * 120.00328 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.00042 * 180.02562 * 4 3 2 34 34 H 1.07998 * 120.00472 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.00012 * 180.29682 * 6 5 4 36 36 H 1.09004 * 109.46801 * 324.99526 * 8 7 2 37 37 H 1.09000 * 109.46987 * 205.00295 * 8 7 2 38 38 H 1.09004 * 109.47066 * 60.00201 * 9 8 7 39 39 H 1.08994 * 109.46974 * 300.00349 * 9 8 7 40 40 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 41 41 H 1.08003 * 118.67198 * 180.27908 * 13 12 11 42 42 H 1.07995 * 125.76588 * 359.95965 * 17 16 11 43 43 H 1.09005 * 109.47124 * 210.00013 * 20 19 15 44 44 H 1.08998 * 109.47256 * 329.99412 * 20 19 15 45 45 H 0.97003 * 119.99965 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0002 0.0005 6 6 3.5807 -1.1968 0.0063 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 6 1.0813 -2.8812 -1.4365 10 7 0.3494 -4.1503 -1.4364 11 6 -0.0906 -4.6936 -2.6274 12 7 0.1413 -4.0794 -3.7825 13 6 -0.2711 -4.5955 -4.9268 14 7 -0.9382 -5.7267 -4.9954 15 6 -1.2250 -6.4146 -3.8914 16 6 -0.8006 -5.9095 -2.6468 17 6 -1.2312 -6.8238 -1.6611 18 7 -1.8610 -7.7997 -2.2505 19 7 -1.8792 -7.5824 -3.6340 20 6 -2.4938 -8.4603 -4.6329 21 6 -1.4819 -9.4741 -5.1014 22 1 -0.4810 -9.4650 -4.6959 23 6 -1.8337 -10.4125 -6.0484 24 7 -3.0523 -10.4231 -6.5425 25 14 -0.5791 -11.6686 -6.6295 26 1 -0.1192 -12.4800 -5.4740 27 1 -1.2022 -12.5585 -7.6420 28 1 0.5811 -10.9661 -7.2342 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1328 0.0010 34 1 5.3518 0.0002 0.0005 35 1 4.1207 -2.1320 0.0111 36 1 0.5338 -2.3957 0.5897 37 1 2.0696 -3.2822 0.4353 38 1 1.9922 -2.9875 -2.0256 39 1 0.4565 -2.1010 -1.8711 40 1 0.1701 -4.6067 -0.5995 41 1 -0.0564 -4.0641 -5.8422 42 1 -1.0661 -6.7300 -0.5979 43 1 -3.3456 -8.9756 -4.1889 44 1 -2.8314 -7.8650 -5.4813 45 1 -3.2999 -11.0835 -7.2085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = 129.813216 kcal Electronic energy + Delta-G solvation = -27168.314585 eV Core-core repulsion = 23379.780166 eV Total energy + Delta-G solvation = -3788.534418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36125 -39.97794 -38.46082 -36.67851 -34.17796 -33.56901 -32.74393 -31.88470 -31.26223 -29.99383 -28.25968 -27.27896 -26.96012 -24.13577 -23.89454 -23.09734 -22.30532 -21.96898 -20.89923 -20.03357 -17.87799 -17.39957 -16.68297 -16.65538 -16.27316 -16.20543 -15.48082 -15.16479 -15.12757 -14.56354 -14.42034 -14.11185 -13.96519 -13.71347 -13.47510 -13.35942 -13.11460 -13.03405 -12.66844 -12.51876 -12.19044 -12.00489 -11.95805 -11.63692 -11.31243 -11.20539 -11.10648 -10.95577 -10.85754 -10.73060 -10.27416 -10.06871 -9.83306 -9.23804 -9.11648 -8.88776 -8.65448 -8.57868 -8.20323 -7.61884 -6.20492 -4.26945 1.01157 1.07816 1.32709 1.96410 2.94465 3.04707 3.13788 3.27376 3.30294 3.35400 3.44458 4.32391 4.41781 4.42916 4.45311 4.56754 4.65025 4.71016 4.76111 4.81108 4.85043 4.99310 5.02198 5.14791 5.18951 5.22347 5.24511 5.31097 5.37643 5.50912 5.53971 5.63766 5.72966 5.75029 5.81108 5.94179 6.17306 6.20552 6.33686 6.34272 6.69195 6.70162 6.93368 7.04459 7.12111 7.25936 7.51853 7.73596 7.92010 7.94403 8.24660 8.73193 8.84905 9.37852 10.87680 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.002029 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.522293 B =13796.057995 C =14010.885456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.079 4.079 8 C -0.096 4.096 9 C 0.137 3.863 10 N -0.709 5.709 11 C 0.509 3.491 12 N -0.618 5.618 13 C 0.367 3.633 14 N -0.554 5.554 15 C 0.363 3.637 16 C -0.338 4.338 17 C 0.068 3.932 18 N -0.243 5.243 19 N -0.332 5.332 20 C 0.264 3.736 21 C -0.533 4.533 22 H 0.061 0.939 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.409 0.591 41 H 0.195 0.805 42 H 0.182 0.818 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 22.674 15.411 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.143 4.143 6 C -0.127 4.127 7 C -0.080 4.080 8 C -0.134 4.134 9 C 0.014 3.986 10 N -0.342 5.342 11 C 0.256 3.744 12 N -0.348 5.348 13 C 0.073 3.927 14 N -0.279 5.279 15 C 0.115 3.885 16 C -0.355 4.355 17 C -0.127 4.127 18 N -0.059 5.059 19 N -0.118 5.118 20 C 0.147 3.853 21 C -0.572 4.572 22 H 0.079 0.921 23 C -0.137 4.137 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.211 0.789 42 H 0.199 0.801 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.749 21.828 14.438 27.928 hybrid contribution 0.941 -0.577 0.498 1.210 sum 10.690 21.251 14.936 28.088 Atomic orbital electron populations 1.20913 0.91148 1.03388 1.02419 1.19806 0.96095 0.92587 0.99269 1.21037 0.94289 0.97467 1.01052 1.21142 0.94336 0.98081 1.00176 1.21127 0.99891 0.92519 1.00792 1.21079 0.93520 0.98314 0.99821 1.19494 0.93538 0.93901 1.01076 1.20817 1.00668 0.94772 0.97105 1.21262 0.96774 0.85120 0.95486 1.44301 1.60039 1.24559 1.05323 1.17887 0.84433 0.85224 0.86831 1.67957 1.32285 1.37009 0.97584 1.24411 0.86765 0.87054 0.94505 1.67517 1.20983 1.09567 1.29848 1.18946 0.91781 0.88630 0.89171 1.19615 1.17317 1.01989 0.96622 1.23359 0.98559 0.91645 0.99143 1.76936 1.19264 1.21185 0.88554 1.49450 1.42596 1.15591 1.04209 1.19788 0.93901 0.88106 0.83508 1.21205 0.97875 1.14308 1.23818 0.92124 1.24898 0.95787 0.97459 0.95558 1.69906 1.18030 1.35901 1.29069 0.86401 0.81059 0.80622 0.78494 1.20035 1.20895 1.19960 0.91111 0.91434 0.90826 0.86122 0.86204 0.86130 0.85953 0.90086 0.90261 0.91273 0.91171 0.75502 0.78898 0.80105 0.92821 0.92257 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.22 36.01 0.33 -0.46 16 2 C -0.08 -0.61 5.88 -104.62 -0.62 -1.22 16 3 C -0.12 -0.89 9.70 -39.58 -0.38 -1.28 16 4 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 5 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 6 C -0.11 -0.84 9.68 -39.58 -0.38 -1.23 16 7 C -0.08 -0.63 5.13 -104.62 -0.54 -1.16 16 8 C -0.10 -0.65 4.76 -27.89 -0.13 -0.79 16 9 C 0.14 1.27 5.52 -4.04 -0.02 1.24 16 10 N -0.71 -7.59 5.68 -60.09 -0.34 -7.93 16 11 C 0.51 7.84 7.55 -154.85 -1.17 6.67 16 12 N -0.62 -9.95 9.69 -13.62 -0.13 -10.08 16 13 C 0.37 6.25 12.24 -92.12 -1.13 5.12 16 14 N -0.55 -11.81 10.47 -13.97 -0.15 -11.95 16 15 C 0.36 8.06 8.04 -156.23 -1.26 6.80 16 16 C -0.34 -6.12 6.14 -106.81 -0.66 -6.78 16 17 C 0.07 1.14 11.87 -17.11 -0.20 0.94 16 18 N -0.24 -5.22 12.45 30.80 0.38 -4.83 16 19 N -0.33 -7.99 3.63 -61.64 -0.22 -8.22 16 20 C 0.26 7.09 6.19 -5.19 -0.03 7.06 16 21 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 22 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 24 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 25 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.07 0.51 5.43 -51.93 -0.28 0.22 16 32 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.08 0.48 6.99 -51.93 -0.36 0.12 16 37 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 40 H 0.41 3.36 8.34 -40.82 -0.34 3.02 16 41 H 0.19 2.51 8.06 -52.48 -0.42 2.09 16 42 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 43 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -33.83 383.78 -12.32 -46.15 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.96 Total: 0.96 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -7.40 Total: -1.51 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: 0.28 Total: -68.18 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.83 -12.32 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.958 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds