Wall clock time and date at job start Tue Mar 31 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 119.99490 * 2 1 4 4 C 1.38216 * 119.99826 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00200 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99585 * 359.70073 * 5 4 3 7 7 C 1.38210 * 120.00302 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00088 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47491 * 84.99487 * 8 7 2 10 10 N 1.46498 * 109.47059 * 179.97438 * 9 8 7 11 11 C 1.38109 * 119.99599 * 179.72256 * 10 9 8 12 12 N 1.32860 * 120.81584 * 0.02562 * 11 10 9 13 13 C 1.32129 * 121.19076 * 179.69432 * 12 11 10 14 14 N 1.31501 * 122.64905 * 0.63590 * 13 12 11 15 15 C 1.33201 * 120.68151 * 359.66501 * 14 13 12 16 16 C 1.40815 * 120.81034 * 180.27649 * 11 10 9 17 17 C 1.41173 * 134.70172 * 0.02562 * 16 11 10 18 18 N 1.30251 * 108.46812 * 179.97438 * 17 16 11 19 19 N 1.36309 * 134.61304 * 180.02562 * 15 14 13 20 20 C 1.46499 * 125.87332 * 0.02562 * 19 15 14 21 21 C 1.50702 * 109.47335 * 90.00123 * 20 19 15 22 22 H 1.07997 * 119.99759 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99981 * 180.02562 * 21 20 19 24 24 N 1.31507 * 119.99995 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99820 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47282 * 59.99812 * 25 23 21 27 27 H 1.48498 * 109.47050 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47228 * 299.99937 * 25 23 21 29 29 H 1.08997 * 109.46888 * 270.01852 * 1 2 3 30 30 H 1.08992 * 109.47427 * 30.02256 * 1 2 3 31 31 H 1.09004 * 109.46678 * 150.02138 * 1 2 3 32 32 H 1.08002 * 120.00328 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.00042 * 180.02562 * 4 3 2 34 34 H 1.07998 * 120.00472 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.00012 * 180.29682 * 6 5 4 36 36 H 1.09004 * 109.46801 * 324.99526 * 8 7 2 37 37 H 1.09000 * 109.46987 * 205.00295 * 8 7 2 38 38 H 1.09004 * 109.47066 * 60.00201 * 9 8 7 39 39 H 1.08994 * 109.46974 * 300.00349 * 9 8 7 40 40 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 41 41 H 1.08003 * 118.67198 * 180.27908 * 13 12 11 42 42 H 1.07995 * 125.76588 * 359.95965 * 17 16 11 43 43 H 1.09005 * 109.47124 * 210.00013 * 20 19 15 44 44 H 1.08998 * 109.47256 * 329.99412 * 20 19 15 45 45 H 0.97003 * 119.99965 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0002 0.0005 6 6 3.5807 -1.1968 0.0063 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 6 1.0813 -2.8812 -1.4365 10 7 0.3494 -4.1503 -1.4364 11 6 -0.0906 -4.6936 -2.6274 12 7 0.1413 -4.0794 -3.7825 13 6 -0.2711 -4.5955 -4.9268 14 7 -0.9382 -5.7267 -4.9954 15 6 -1.2250 -6.4146 -3.8914 16 6 -0.8006 -5.9095 -2.6468 17 6 -1.2312 -6.8238 -1.6611 18 7 -1.8610 -7.7997 -2.2505 19 7 -1.8792 -7.5824 -3.6340 20 6 -2.4938 -8.4603 -4.6329 21 6 -1.4819 -9.4741 -5.1014 22 1 -0.4810 -9.4650 -4.6959 23 6 -1.8337 -10.4125 -6.0484 24 7 -3.0523 -10.4231 -6.5425 25 14 -0.5791 -11.6686 -6.6295 26 1 -0.1192 -12.4800 -5.4740 27 1 -1.2022 -12.5585 -7.6420 28 1 0.5811 -10.9661 -7.2342 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1328 0.0010 34 1 5.3518 0.0002 0.0005 35 1 4.1207 -2.1320 0.0111 36 1 0.5338 -2.3957 0.5897 37 1 2.0696 -3.2822 0.4353 38 1 1.9922 -2.9875 -2.0256 39 1 0.4565 -2.1010 -1.8711 40 1 0.1701 -4.6067 -0.5995 41 1 -0.0564 -4.0641 -5.8422 42 1 -1.0661 -6.7300 -0.5979 43 1 -3.3456 -8.9756 -4.1889 44 1 -2.8314 -7.8650 -5.4813 45 1 -3.2999 -11.0835 -7.2085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:06 Heat of formation + Delta-G solvation = 111.340666 kcal Electronic energy + Delta-G solvation = -27169.115614 eV Core-core repulsion = 23379.780166 eV Total energy + Delta-G solvation = -3789.335448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.160 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.80495 -40.53451 -39.82339 -37.72368 -35.77810 -34.82615 -33.61213 -33.12808 -32.73909 -31.15467 -29.34867 -28.86922 -27.62189 -25.63185 -25.16561 -24.53690 -23.33537 -22.74797 -21.68162 -21.28748 -19.32694 -18.80530 -18.65973 -17.71164 -17.09512 -16.92341 -16.82361 -16.53876 -16.19926 -15.79196 -15.37799 -15.26036 -15.07581 -14.93190 -14.65717 -14.45930 -13.97650 -13.94542 -13.74037 -13.60815 -13.27339 -13.07439 -13.04281 -12.86891 -12.74739 -12.55350 -12.35935 -12.28909 -12.14784 -11.82669 -11.73384 -11.63367 -11.49725 -10.75708 -10.59608 -10.06611 -9.75946 -9.65409 -9.42059 -8.98010 -8.35148 -6.52174 -0.03001 0.46746 0.53677 0.54334 1.32838 1.37555 1.39824 1.48883 1.64961 2.04345 2.31868 2.88930 2.94400 3.02013 3.29112 3.40317 3.67051 3.75260 3.94074 3.98196 4.11364 4.13476 4.14995 4.20550 4.32818 4.45225 4.49448 4.65253 4.67471 4.83175 4.85355 4.85532 4.87410 5.00772 5.03221 5.04326 5.20534 5.26606 5.40656 5.47709 5.56351 5.65066 5.68568 5.75800 5.78383 5.79934 5.96972 6.13230 6.19556 6.53161 6.60021 6.81203 7.17088 7.46561 8.72246 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.002029 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.522293 B =13796.057995 C =14010.885456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.127 4.127 5 C -0.137 4.137 6 C -0.121 4.121 7 C -0.092 4.092 8 C -0.085 4.085 9 C 0.141 3.859 10 N -0.682 5.682 11 C 0.517 3.483 12 N -0.617 5.617 13 C 0.375 3.625 14 N -0.605 5.605 15 C 0.334 3.666 16 C -0.344 4.344 17 C 0.102 3.898 18 N -0.291 5.291 19 N -0.366 5.366 20 C 0.285 3.715 21 C -0.552 4.552 22 H 0.046 0.954 23 C 0.018 3.982 24 N -0.919 5.919 25 Si 0.975 3.025 26 H -0.268 1.268 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.425 0.575 41 H 0.229 0.771 42 H 0.242 0.758 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 24.011 17.240 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.093 4.093 8 C -0.122 4.122 9 C 0.017 3.983 10 N -0.314 5.314 11 C 0.262 3.738 12 N -0.348 5.348 13 C 0.083 3.917 14 N -0.333 5.333 15 C 0.088 3.912 16 C -0.362 4.362 17 C -0.093 4.093 18 N -0.106 5.106 19 N -0.153 5.153 20 C 0.166 3.834 21 C -0.590 4.590 22 H 0.064 0.936 23 C -0.182 4.182 24 N -0.557 5.557 25 Si 0.798 3.202 26 H -0.193 1.193 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.264 0.736 41 H 0.244 0.756 42 H 0.258 0.742 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.764 23.212 16.344 30.729 hybrid contribution 0.427 -0.710 0.042 0.829 sum 12.191 22.502 16.385 30.388 Atomic orbital electron populations 1.20915 0.90404 1.03366 1.02992 1.20046 0.96820 0.92829 0.99285 1.21301 0.94700 0.98054 1.01058 1.21428 0.94530 0.98871 0.99696 1.21401 1.00842 0.92573 1.00656 1.21314 0.93773 0.98974 0.99842 1.19626 0.93762 0.94267 1.01596 1.20734 1.01428 0.94725 0.95349 1.21324 0.95862 0.83828 0.97245 1.44387 1.58029 1.24605 1.04406 1.18002 0.83422 0.84307 0.88038 1.68109 1.32390 1.36656 0.97647 1.25140 0.84670 0.85761 0.96140 1.67526 1.23593 1.11501 1.30630 1.19382 0.92131 0.88452 0.91256 1.19738 1.18013 1.03116 0.95345 1.24299 0.94700 0.89087 1.01236 1.76889 1.22456 1.23829 0.87391 1.49083 1.44756 1.16526 1.04910 1.19110 0.93121 0.87673 0.83516 1.21352 0.97563 1.15498 1.24601 0.93614 1.25812 0.97854 0.99265 0.95309 1.70005 1.19673 1.36682 1.29361 0.85356 0.78426 0.78050 0.78325 1.19314 1.19352 1.19658 0.90200 0.91100 0.91199 0.84898 0.84605 0.84728 0.85006 0.88773 0.88930 0.92204 0.91700 0.73604 0.75552 0.74228 0.95084 0.95031 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.22 71.24 0.66 -0.64 16 2 C -0.09 -1.22 5.88 -19.87 -0.12 -1.34 16 3 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 4 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 5 C -0.14 -1.75 10.05 22.27 0.22 -1.53 16 6 C -0.12 -1.62 9.68 22.27 0.22 -1.41 16 7 C -0.09 -1.23 5.13 -19.87 -0.10 -1.33 16 8 C -0.08 -0.88 4.76 29.85 0.14 -0.74 16 9 C 0.14 2.17 5.52 86.38 0.48 2.65 16 10 N -0.68 -12.24 5.68 -344.01 -1.95 -14.20 16 11 C 0.52 14.77 7.55 133.64 1.01 15.78 16 12 N -0.62 -18.82 9.69 -197.01 -1.91 -20.73 16 13 C 0.38 12.57 12.24 180.87 2.21 14.79 16 14 N -0.61 -26.45 10.47 -198.10 -2.07 -28.53 16 15 C 0.33 15.25 8.04 134.15 1.08 16.33 16 16 C -0.34 -12.09 6.14 -21.28 -0.13 -12.22 16 17 C 0.10 3.23 11.87 85.65 1.02 4.24 16 18 N -0.29 -12.62 12.45 -56.46 -0.70 -13.32 16 19 N -0.37 -18.45 3.63 -348.94 -1.27 -19.72 16 20 C 0.28 16.34 6.19 85.63 0.53 16.87 16 21 C -0.55 -33.14 9.39 25.60 0.24 -32.90 16 22 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 23 C 0.02 1.06 5.46 84.66 0.46 1.53 16 24 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 25 Si 0.98 45.29 29.54 68.60 2.03 47.32 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 31 H 0.07 0.79 5.43 -2.39 -0.01 0.78 16 32 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.13 1.23 8.06 -2.91 -0.02 1.20 16 35 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.09 0.76 6.99 -2.38 -0.02 0.75 16 37 H 0.09 0.75 8.05 -2.39 -0.02 0.73 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 39 H 0.06 1.14 6.91 -2.39 -0.02 1.13 16 40 H 0.42 5.06 8.34 -92.71 -0.77 4.28 16 41 H 0.23 5.60 8.06 -2.91 -0.02 5.58 16 42 H 0.24 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.03 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.03 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -77.92 383.78 3.01 -74.90 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.25 Total: 11.78 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 8.36 Total: 17.18 kcal Atomic # 7 Polarization: -143.55 SS G_CDS: -7.62 Total: -151.17 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -77.92 3.01 -74.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.244 kcal (2) G-P(sol) polarization free energy of solvation -77.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds