Wall clock time and date at job start Tue Mar 31 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86795 * 120.00132 * 2 1 4 4 H 1.48505 * 109.47333 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47330 * 120.00199 * 3 2 1 6 6 H 1.48502 * 109.47404 * 240.00197 * 3 2 1 7 7 C 1.40351 * 119.99577 * 179.72757 * 2 1 3 8 8 H 1.07993 * 120.00405 * 4.72511 * 7 2 1 9 9 C 1.41799 * 119.99727 * 184.72582 * 7 2 1 10 10 O 1.21767 * 120.00128 * 6.82370 * 9 7 2 11 11 C 1.47830 * 120.00141 * 186.82593 * 9 7 2 12 12 C 1.39741 * 120.14061 * 359.72282 * 11 9 7 13 13 C 1.37990 * 119.83996 * 179.72092 * 12 11 9 14 14 Cl 1.73601 * 119.93288 * 180.27991 * 13 12 11 15 15 C 1.38571 * 120.13683 * 0.55765 * 13 12 11 16 16 C 1.38459 * 120.28843 * 359.71912 * 15 13 12 17 17 I 2.09501 * 119.92018 * 180.02562 * 16 15 13 18 18 C 1.37977 * 120.15565 * 0.02562 * 16 15 13 19 19 H 0.96992 * 120.00404 * 174.91391 * 1 2 3 20 20 H 1.08003 * 120.08439 * 0.02562 * 12 11 9 21 21 H 1.08001 * 119.85427 * 179.74224 * 15 13 12 22 22 H 1.08001 * 120.06528 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 1.2744 2.7465 0.0006 5 1 3.0932 1.6963 1.2125 6 1 3.0931 1.6964 -1.2125 7 6 2.0070 -1.2155 0.0058 8 1 1.4698 -2.1495 -0.0668 9 6 3.4214 -1.2172 0.1070 10 8 4.0182 -0.1761 0.3135 11 6 4.1714 -2.4828 -0.0383 12 6 3.4891 -3.6801 -0.2696 13 6 4.1957 -4.8570 -0.4099 14 17 3.3510 -6.3448 -0.7046 15 6 5.5779 -4.8547 -0.3104 16 6 6.2591 -3.6724 -0.0756 17 53 8.3489 -3.6821 0.0719 18 6 5.5649 -2.4879 0.0614 19 1 -0.4850 -0.8366 -0.0745 20 1 2.4116 -3.6837 -0.3433 21 1 6.1261 -5.7791 -0.4169 22 1 6.0978 -1.5665 0.2441 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097446554.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:56 Heat of formation + Delta-G solvation = -47.136635 kcal Electronic energy + Delta-G solvation = -12510.903861 eV Core-core repulsion = 9914.460499 eV Total energy + Delta-G solvation = -2596.443362 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 335.915 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83921 -38.94748 -37.53774 -35.37462 -33.71404 -32.02884 -29.66517 -28.50541 -24.93970 -23.26111 -21.59609 -19.64475 -18.23354 -17.00173 -16.63547 -16.21179 -15.59383 -15.31542 -15.03769 -14.60549 -14.35727 -13.88622 -13.00989 -12.86562 -12.60040 -12.46228 -12.37256 -12.01921 -11.40168 -11.35735 -11.28145 -11.03539 -10.02860 -10.00437 -9.87315 -9.28127 -7.45819 -0.34544 -0.14498 -0.11953 0.96711 1.26879 1.53361 1.86534 1.94316 2.36101 2.44490 3.27986 3.56199 3.83904 3.89662 4.09480 4.23890 4.46971 4.84611 4.89020 5.19386 5.33022 5.42001 5.57742 6.09675 6.35965 7.61277 7.85400 Molecular weight = 335.92amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.005283 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.581629 B = 5298.590402 C = 6991.990006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.027 3.973 3 Si 1.156 2.844 4 H -0.305 1.305 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.371 3.629 10 O -0.604 6.604 11 C -0.115 4.115 12 C -0.064 4.064 13 C -0.040 4.040 14 Cl -0.049 7.049 15 C -0.063 4.063 16 C -0.105 4.105 17 I -0.003 7.003 18 C -0.055 4.055 19 H 0.288 0.712 20 H 0.140 0.860 21 H 0.164 0.836 22 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.966 -12.713 -1.137 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.193 4.193 3 Si 0.987 3.013 4 H -0.235 1.235 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.601 4.601 8 H 0.101 0.899 9 C 0.276 3.724 10 O -0.506 6.506 11 C -0.118 4.118 12 C -0.084 4.084 13 C -0.068 4.068 14 Cl -0.020 7.020 15 C -0.085 4.085 16 C -0.245 4.245 17 I 0.146 6.854 18 C -0.075 4.075 19 H 0.100 0.900 20 H 0.157 0.843 21 H 0.182 0.818 22 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.344 -10.924 -0.913 19.680 hybrid contribution -1.646 -1.964 -0.158 2.567 sum 14.698 -12.888 -1.071 19.578 Atomic orbital electron populations 1.70558 1.08116 1.33306 1.30899 1.28198 0.95686 1.07367 0.88063 0.81977 0.71053 0.69655 0.78650 1.23531 1.22048 1.21746 1.22285 0.94349 0.96701 1.46795 0.89889 1.18565 0.89600 0.86448 0.77738 1.90005 1.71631 1.33698 1.55311 1.21000 0.94149 0.95926 1.00766 1.21509 1.01208 0.90054 0.95591 1.20814 0.92569 0.87869 1.05595 1.98363 1.77579 1.31712 1.94388 1.21243 0.91765 0.98290 0.97162 1.24264 0.97518 0.94845 1.07864 1.96734 0.90794 1.99568 1.98308 1.21368 0.93283 0.97801 0.95081 0.90045 0.84266 0.81812 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.54 13.64 21.89 0.30 -42.24 14 2 C 0.03 1.45 5.52 85.40 0.47 1.92 14 3 Si 1.16 57.16 25.97 68.60 1.78 58.95 14 4 H -0.30 -14.11 7.11 99.48 0.71 -13.40 14 5 H -0.29 -15.13 6.76 99.48 0.67 -14.45 14 6 H -0.29 -14.39 7.11 99.48 0.71 -13.69 14 7 C -0.57 -30.13 9.28 23.67 0.22 -29.91 14 8 H 0.08 4.20 6.27 -2.91 -0.02 4.18 14 9 C 0.37 19.00 6.75 25.69 0.17 19.17 14 10 O -0.60 -33.43 11.92 -4.56 -0.05 -33.49 14 11 C -0.12 -4.84 5.88 -20.02 -0.12 -4.96 14 12 C -0.06 -2.34 9.21 22.57 0.21 -2.13 14 13 C -0.04 -1.19 6.31 22.29 0.14 -1.05 14 14 Cl -0.05 -1.24 28.95 -2.72 -0.08 -1.32 14 15 C -0.06 -1.69 9.54 22.40 0.21 -1.47 14 16 C -0.11 -3.08 6.19 22.26 0.14 -2.95 14 17 I 0.00 -0.06 40.26 -18.82 -0.76 -0.82 14 18 C -0.05 -2.00 9.30 22.56 0.21 -1.79 14 19 H 0.29 14.52 8.72 -92.71 -0.81 13.71 14 20 H 0.14 5.16 6.22 -2.91 -0.02 5.14 14 21 H 0.16 3.38 8.06 -2.91 -0.02 3.36 14 22 H 0.13 5.04 7.65 -2.91 -0.02 5.02 14 Total: -1.00 -56.26 246.62 4.04 -52.21 By element: Atomic # 1 Polarization: -11.33 SS G_CDS: 1.20 Total: -10.14 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 1.66 Total: -23.16 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.30 Total: -42.24 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.05 Total: -33.49 kcal Atomic # 14 Polarization: 57.16 SS G_CDS: 1.78 Total: 58.95 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Atomic # 53 Polarization: -0.06 SS G_CDS: -0.76 Total: -0.82 kcal Total: -56.26 4.04 -52.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097446554.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.077 kcal (2) G-P(sol) polarization free energy of solvation -56.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds