Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00246 * 2 1 4 4 O 1.20834 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00121 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47181 * 179.97438 * 5 3 2 7 7 C 1.36712 * 119.99728 * 96.35349 * 6 5 3 8 8 H 1.08003 * 120.00053 * 153.01194 * 7 6 5 9 9 C 1.39123 * 120.00334 * 332.72984 * 7 6 5 10 10 N 1.31328 * 119.99587 * 353.34310 * 9 7 6 11 11 Si 1.86792 * 120.00212 * 173.34578 * 9 7 6 12 12 H 1.48496 * 109.47165 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47282 * 120.00138 * 11 9 7 14 14 H 1.48507 * 109.46920 * 240.00138 * 11 9 7 15 15 C 1.34777 * 120.00127 * 276.35069 * 6 5 3 16 16 O 1.21759 * 119.99661 * 0.02562 * 15 6 5 17 17 C 1.46223 * 120.00191 * 179.97438 * 15 6 5 18 18 C 1.34970 * 120.00213 * 174.75318 * 17 15 6 19 19 C 1.50703 * 120.00047 * 359.80301 * 18 17 15 20 20 C 1.47151 * 120.00117 * 179.79795 * 18 17 15 21 21 C 1.39898 * 120.16950 * 294.72520 * 20 18 17 22 22 C 1.37855 * 119.84784 * 179.74528 * 21 20 18 23 23 C 1.38417 * 120.18848 * 0.55556 * 22 21 20 24 24 C 1.38502 * 120.33928 * 359.69711 * 23 22 21 25 25 Cl 1.73600 * 119.92413 * 180.02562 * 24 23 22 26 26 C 1.38016 * 120.14714 * 0.02562 * 24 23 22 27 27 H 1.09004 * 109.46614 * 299.99990 * 1 2 3 28 28 H 1.08997 * 109.47045 * 59.99810 * 1 2 3 29 29 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47317 * 60.00099 * 5 3 2 31 31 H 1.08996 * 109.47218 * 299.99970 * 5 3 2 32 32 H 0.97001 * 119.99535 * 179.97438 * 10 9 7 33 33 H 1.08000 * 119.99983 * 354.75530 * 17 15 6 34 34 H 1.09002 * 109.47099 * 54.54620 * 19 18 17 35 35 H 1.08997 * 109.47237 * 174.54608 * 19 18 17 36 36 H 1.08994 * 109.46731 * 294.54871 * 19 18 17 37 37 H 1.08001 * 120.07483 * 0.02562 * 21 20 18 38 38 H 1.08002 * 119.90558 * 180.25066 * 22 21 20 39 39 H 1.08001 * 119.82716 * 179.72073 * 23 22 21 40 40 H 1.08004 * 120.09362 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.3017 3.2983 1.1754 8 1 4.9929 4.1281 1.1786 9 6 3.7324 2.8626 2.3677 10 7 2.7915 1.9466 2.3498 11 14 4.3063 3.5805 3.9939 12 1 5.3687 4.5873 3.7431 13 1 3.1605 4.2296 4.6802 14 1 4.8464 2.4948 4.8512 15 6 4.0487 3.3623 -1.1613 16 8 3.7633 2.8114 -2.2090 17 6 4.4628 4.7646 -1.1618 18 6 4.6321 5.4179 -2.3306 19 6 4.3987 4.7008 -3.6354 20 6 5.0445 6.8305 -2.3309 21 6 4.1957 7.8108 -1.8060 22 6 4.5910 9.1315 -1.8049 23 6 5.8195 9.4908 -2.3318 24 6 6.6637 8.5273 -2.8583 25 17 8.2023 8.9899 -3.5158 26 6 6.2845 7.2003 -2.8614 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9558 0.7808 -0.8908 31 1 3.9564 0.7805 0.8891 32 1 2.3949 1.6425 3.1812 33 1 4.6331 5.2777 -0.2268 34 1 3.3994 4.2656 -3.6371 35 1 4.4884 5.4081 -4.4598 36 1 5.1396 3.9100 -3.7528 37 1 3.2349 7.5331 -1.3984 38 1 3.9381 9.8886 -1.3962 39 1 6.1213 10.5278 -2.3320 40 1 6.9436 6.4496 -3.2717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098018805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -87.513858 kcal Electronic energy + Delta-G solvation = -26531.783476 eV Core-core repulsion = 22530.973602 eV Total energy + Delta-G solvation = -4000.809874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35310 -40.54318 -39.95088 -37.61827 -37.32049 -36.56289 -35.51487 -33.50487 -31.82834 -31.19142 -30.39985 -28.64810 -27.72011 -26.45759 -24.54209 -23.49893 -22.40271 -21.35360 -20.43384 -18.65292 -18.38315 -18.15917 -17.55597 -17.28397 -16.95621 -16.48543 -16.38235 -16.08435 -15.90414 -15.42481 -15.08914 -14.71044 -14.66715 -14.24893 -14.20177 -14.13957 -13.61761 -13.58264 -13.32138 -13.06037 -12.95921 -12.79851 -12.61510 -12.55939 -12.45776 -12.35906 -12.18531 -11.99674 -11.82927 -11.54769 -11.42995 -10.95864 -10.33772 -10.27286 -9.87017 -9.76329 -9.50779 -8.38391 -6.01540 -0.05734 0.21738 0.58465 1.13345 1.45728 1.46990 1.59770 1.79556 1.98170 2.32007 2.55337 2.61464 2.91617 3.18514 3.63059 3.88685 4.09485 4.12570 4.24456 4.27011 4.35965 4.39935 4.41798 4.44485 4.58915 4.65077 4.70218 4.71490 4.79174 4.87669 4.92936 5.15658 5.18550 5.30847 5.38887 5.40290 5.56122 5.63782 5.68962 5.77849 5.82315 6.33093 7.05542 7.27313 7.48277 7.89043 8.68698 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.003202 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.484878 B = 8743.234440 C = 9887.006957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.491 3.509 4 O -0.539 6.539 5 C 0.158 3.842 6 N -0.435 5.435 7 C -0.346 4.346 8 H 0.111 0.889 9 C -0.002 4.002 10 N -0.899 5.899 11 Si 0.997 3.003 12 H -0.255 1.255 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.486 3.514 16 O -0.619 6.619 17 C -0.176 4.176 18 C -0.027 4.027 19 C -0.092 4.092 20 C -0.046 4.046 21 C -0.109 4.109 22 C -0.098 4.098 23 C -0.107 4.107 24 C -0.040 4.040 25 Cl -0.068 7.068 26 C -0.103 4.103 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.271 0.729 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 9.611 -5.421 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.334 3.666 4 O -0.426 6.426 5 C 0.032 3.968 6 N -0.152 5.152 7 C -0.473 4.473 8 H 0.128 0.872 9 C -0.204 4.204 10 N -0.538 5.538 11 Si 0.821 3.179 12 H -0.179 1.179 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.280 3.720 16 O -0.508 6.508 17 C -0.197 4.197 18 C -0.030 4.030 19 C -0.148 4.148 20 C -0.047 4.047 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.067 4.067 25 Cl -0.039 7.039 26 C -0.121 4.121 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.244 9.538 -5.810 11.948 hybrid contribution -0.294 -0.102 1.098 1.142 sum 3.950 9.436 -4.711 11.263 Atomic orbital electron populations 1.23264 0.76333 1.04754 1.01071 1.86418 1.23993 1.33915 1.85167 1.23948 0.92522 0.80711 0.69444 1.90471 1.67299 1.37707 1.47161 1.20440 0.87188 0.85731 1.03428 1.43366 1.56854 1.08279 1.06696 1.19988 1.25899 1.17869 0.83577 0.87194 1.26223 0.94208 0.96797 1.03167 1.69693 1.24601 1.30586 1.28881 0.84793 0.77951 0.78393 0.76755 1.17876 1.21421 1.19919 1.18648 0.81948 0.87958 0.83417 1.90618 1.56762 1.71339 1.32088 1.22738 1.04388 0.93917 0.98651 1.21046 0.94524 0.92141 0.95271 1.20758 1.02665 0.98700 0.92669 1.18808 0.94546 0.91816 0.99509 1.21657 0.99769 0.93174 0.98148 1.21352 0.96121 0.95873 0.98237 1.21450 0.93458 1.00091 0.97591 1.20883 0.89119 0.94197 1.02476 1.98366 1.28543 1.92387 1.84583 1.21181 0.95904 0.95080 0.99968 0.93730 0.93235 0.84837 0.89380 0.86371 0.91844 0.85425 0.91763 0.91262 0.91506 0.85281 0.81875 0.82422 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.41 10.57 -51.36 -0.54 -16.95 16 3 C 0.49 24.88 5.97 71.23 0.42 25.30 16 4 O -0.54 -30.81 15.47 21.94 0.34 -30.47 16 5 C 0.16 7.72 5.13 85.63 0.44 8.16 16 6 N -0.43 -22.16 2.16 -644.65 -1.39 -23.56 16 7 C -0.35 -17.27 8.86 84.15 0.75 -16.53 16 8 H 0.11 5.15 6.28 -2.91 -0.02 5.13 16 9 C 0.00 -0.11 5.15 84.98 0.44 0.33 16 10 N -0.90 -46.70 8.69 21.69 0.19 -46.51 16 11 Si 1.00 39.08 29.56 68.60 2.03 41.10 16 12 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 13 H -0.29 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 15 C 0.49 24.08 7.29 86.32 0.63 24.71 16 16 O -0.62 -32.06 12.84 -4.54 -0.06 -32.12 16 17 C -0.18 -7.38 8.86 23.59 0.21 -7.17 16 18 C -0.03 -0.95 5.49 -18.27 -0.10 -1.05 16 19 C -0.09 -3.18 8.36 71.24 0.60 -2.58 16 20 C -0.05 -1.33 5.23 -20.15 -0.11 -1.44 16 21 C -0.11 -2.76 9.73 22.58 0.22 -2.54 16 22 C -0.10 -1.87 10.03 22.22 0.22 -1.65 16 23 C -0.11 -1.99 9.82 22.38 0.22 -1.77 16 24 C -0.04 -0.89 6.31 22.28 0.14 -0.75 16 25 Cl -0.07 -1.35 28.95 -2.72 -0.08 -1.43 16 26 C -0.10 -2.62 9.56 22.61 0.22 -2.40 16 27 H 0.04 1.61 8.13 -2.38 -0.02 1.59 16 28 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.09 4.04 7.62 -2.39 -0.02 4.02 16 31 H 0.12 5.74 6.68 -2.39 -0.02 5.72 16 32 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.13 5.22 6.37 -2.91 -0.02 5.20 16 34 H 0.06 2.59 6.72 -2.39 -0.02 2.57 16 35 H 0.07 1.95 7.99 -2.39 -0.02 1.94 16 36 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 37 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -66.17 360.22 7.05 -59.12 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 1.07 Total: 27.65 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.49 Total: 23.16 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.20 Total: -70.06 kcal Atomic # 8 Polarization: -79.28 SS G_CDS: -0.26 Total: -79.54 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -66.17 7.05 -59.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098018805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.391 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds