Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47227 * 2 1 4 4 C 1.36939 * 120.00012 * 264.03821 * 3 2 1 5 5 H 1.08000 * 120.00332 * 188.07674 * 4 3 2 6 6 C 1.38815 * 119.99808 * 8.07118 * 4 3 2 7 7 N 1.31614 * 120.00278 * 25.13135 * 6 4 3 8 8 Si 1.86800 * 120.00125 * 205.12943 * 6 4 3 9 9 H 1.48500 * 109.47302 * 84.99094 * 8 6 4 10 10 H 1.48493 * 109.47294 * 204.99502 * 8 6 4 11 11 H 1.48510 * 109.46899 * 324.99195 * 8 6 4 12 12 C 1.46494 * 120.00131 * 84.03974 * 3 2 1 13 13 C 1.50702 * 109.46844 * 270.00193 * 12 3 2 14 14 O 1.21277 * 120.00025 * 359.97438 * 13 12 3 15 15 N 1.34778 * 119.99901 * 180.02562 * 13 12 3 16 16 C 1.46504 * 119.99789 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46679 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46751 * 179.97438 * 17 16 15 19 19 C 1.38253 * 119.93063 * 270.01745 * 18 17 16 20 20 C 1.38239 * 120.14824 * 179.76830 * 19 18 17 21 21 C 1.38562 * 119.99837 * 0.46648 * 20 19 18 22 22 O 1.35997 * 120.07404 * 179.79164 * 21 20 19 23 23 C 1.42905 * 116.99691 * 359.72159 * 22 21 20 24 24 C 1.39151 * 119.85632 * 359.51654 * 21 20 19 25 25 O 1.35991 * 120.07824 * 180.23184 * 24 21 20 26 26 C 1.42895 * 117.00424 * 179.97438 * 25 24 21 27 27 C 1.38247 * 119.92572 * 89.99917 * 18 17 16 28 28 H 1.09002 * 109.47174 * 60.00103 * 1 2 3 29 29 H 1.09001 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46906 * 300.00111 * 1 2 3 31 31 H 1.09002 * 109.46906 * 239.99889 * 2 1 3 32 32 H 1.08996 * 109.47263 * 120.00608 * 2 1 3 33 33 H 0.97003 * 120.00513 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47289 * 149.99865 * 12 3 2 35 35 H 1.09003 * 109.47304 * 29.99282 * 12 3 2 36 36 H 0.96997 * 120.00090 * 359.97438 * 15 13 12 37 37 H 1.08994 * 109.47581 * 59.99503 * 16 15 13 38 38 H 1.09004 * 109.46904 * 299.99136 * 16 15 13 39 39 H 1.08994 * 109.47350 * 59.99569 * 17 16 15 40 40 H 1.08995 * 109.47047 * 299.99543 * 17 16 15 41 41 H 1.07995 * 119.92290 * 0.02728 * 19 18 17 42 42 H 1.08000 * 120.00245 * 180.23674 * 20 19 18 43 43 H 1.09001 * 109.46951 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.47230 * 300.00303 * 23 22 21 45 45 H 1.08997 * 109.47086 * 60.00420 * 23 22 21 46 46 H 1.08996 * 109.47120 * 299.99973 * 26 25 24 47 47 H 1.09000 * 109.47232 * 60.00078 * 26 25 24 48 48 H 1.09004 * 109.47175 * 179.97438 * 26 25 24 49 49 H 1.08007 * 119.99872 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3628 1.9857 -1.1795 5 1 2.8438 2.9526 -1.1705 6 6 2.0937 1.3555 -2.3868 7 7 1.1179 0.4760 -2.4669 8 14 3.1165 1.7559 -3.8977 9 1 4.3451 0.9218 -3.8991 10 1 2.3242 1.4723 -5.1212 11 1 3.4933 3.1922 -3.8740 12 6 2.1384 2.1157 1.2618 13 6 0.8471 2.8386 1.5469 14 8 -0.0816 2.7494 0.7721 15 7 0.7249 3.5851 2.6624 16 6 -0.5306 4.2874 2.9398 17 6 -0.4052 5.0546 4.2576 18 6 -1.6965 5.7775 4.5427 19 6 -1.8831 7.0658 4.0769 20 6 -3.0677 7.7313 4.3317 21 6 -4.0673 7.1109 5.0636 22 8 -5.2316 7.7659 5.3188 23 6 -5.3542 9.0944 4.8069 24 6 -3.8797 5.8142 5.5322 25 8 -4.8597 5.1993 6.2469 26 6 -4.5977 3.8680 6.6953 27 6 -2.6919 5.1509 5.2691 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.9296 0.0359 -3.3106 34 1 2.9504 2.8387 1.1856 35 1 2.3493 1.4163 2.0708 36 1 1.4678 3.6567 3.2819 37 1 -1.3423 3.5640 3.0167 38 1 -0.7423 4.9865 2.1307 39 1 0.4065 5.7779 4.1812 40 1 -0.1937 4.3553 5.0665 41 1 -1.1034 7.5516 3.5092 42 1 -3.2125 8.7362 3.9635 43 1 -6.3276 9.5010 5.0811 44 1 -4.5676 9.7203 5.2283 45 1 -5.2608 9.0754 3.7211 46 1 -4.4149 3.2242 5.8349 47 1 -3.7201 3.8684 7.3417 48 1 -5.4581 3.4960 7.2516 49 1 -2.5435 4.1444 5.6319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103991948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -50.892497 kcal Electronic energy + Delta-G solvation = -28783.139505 eV Core-core repulsion = 24712.593339 eV Total energy + Delta-G solvation = -4070.546166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.81726 -38.88153 -38.66782 -37.59382 -35.66085 -34.51857 -32.06571 -31.22687 -30.57543 -29.60411 -28.82124 -27.50256 -27.23775 -26.09342 -23.64586 -22.82008 -22.42623 -21.25096 -20.60073 -19.55221 -18.63216 -17.29231 -17.00105 -16.69645 -16.34578 -16.19385 -15.58917 -15.48284 -15.07308 -14.99963 -14.74679 -14.69990 -14.17191 -13.97328 -13.47768 -13.34666 -13.11020 -12.84819 -12.64470 -12.39066 -12.25753 -12.06686 -11.77921 -11.58237 -11.52585 -11.43943 -11.36137 -11.31821 -11.05120 -10.95976 -10.77393 -10.67609 -10.36743 -9.90155 -9.62462 -9.25708 -8.96616 -8.90736 -8.45733 -8.23255 -7.97953 -6.83627 -5.67395 -2.99384 1.03923 1.19104 3.01326 3.03670 3.41383 3.44854 3.50675 3.52321 3.63268 3.79915 4.48594 4.55718 4.61945 4.71831 4.81817 4.87260 4.89035 4.94789 4.98873 5.07646 5.14698 5.20817 5.22233 5.27602 5.39214 5.41577 5.54712 5.57711 5.84175 5.88809 5.93938 6.03226 6.18182 6.22519 6.31749 6.39281 6.44453 6.68079 6.79403 7.00255 7.07932 7.24038 7.32700 7.33356 7.72183 7.90502 8.15729 8.35758 8.43042 9.17798 9.30661 9.90969 10.34592 11.35832 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.002121 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.531001 B =13201.046794 C =13743.724156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.166 3.834 3 N -0.569 5.569 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.132 3.868 13 C 0.466 3.534 14 O -0.505 6.505 15 N -0.752 5.752 16 C 0.126 3.874 17 C -0.087 4.087 18 C -0.073 4.073 19 C -0.110 4.110 20 C -0.170 4.170 21 C 0.093 3.907 22 O -0.309 6.309 23 C 0.027 3.973 24 C 0.100 3.900 25 O -0.308 6.308 26 C 0.025 3.975 27 C -0.166 4.166 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.017 0.983 31 H 0.090 0.910 32 H 0.001 0.999 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.100 0.900 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.334 12.803 20.739 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 N -0.288 5.288 4 C -0.377 4.377 5 H 0.091 0.909 6 C -0.198 4.198 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C -0.001 4.001 13 C 0.250 3.750 14 O -0.377 6.377 15 N -0.409 5.409 16 C 0.002 3.998 17 C -0.125 4.125 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.188 4.188 21 C 0.048 3.952 22 O -0.222 6.222 23 C -0.069 4.069 24 C 0.055 3.945 25 O -0.222 6.222 26 C -0.070 4.070 27 C -0.184 4.184 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.117 0.883 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.118 0.882 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.433 12.584 20.085 25.157 hybrid contribution 0.740 0.425 -0.597 1.042 sum -7.693 13.009 19.488 24.662 Atomic orbital electron populations 1.22259 0.98601 0.97044 1.02134 1.20930 0.93022 0.83861 0.98090 1.44267 1.73765 1.09670 1.01062 1.19225 1.31364 1.03557 0.83547 0.90887 1.24754 0.97707 1.00100 0.97280 1.70223 1.27023 1.31324 1.24736 0.86325 0.80232 0.77776 0.82643 1.21565 1.21988 1.20807 1.20932 0.92845 0.95236 0.91062 1.23616 0.93158 0.78642 0.79562 1.90695 1.40862 1.60273 1.45872 1.46574 1.15545 1.52679 1.26132 1.21134 0.88092 0.95416 0.95187 1.20758 0.94577 0.99119 0.98004 1.19431 0.95685 0.94281 0.97978 1.20790 0.97220 0.94397 1.00384 1.21047 0.94169 1.01192 1.02440 1.18247 0.87253 0.90442 0.99287 1.86163 1.33751 1.28515 1.73815 1.23059 1.03127 0.81587 0.99094 1.18211 0.89137 0.90519 0.96640 1.86156 1.39152 1.29295 1.67592 1.23084 1.02894 0.81503 0.99490 1.20980 0.92864 1.00824 1.03775 0.89053 0.97156 0.96435 0.89189 0.98090 0.93877 0.90860 0.91555 0.77671 0.92304 0.92078 0.90231 0.90506 0.85338 0.84739 0.88289 0.92776 0.92637 0.92450 0.92707 0.88210 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.71 37.16 0.32 -3.30 16 2 C 0.17 4.16 5.64 -4.04 -0.02 4.14 16 3 N -0.57 -14.39 2.12 -174.61 -0.37 -14.76 16 4 C -0.25 -6.87 9.70 -15.06 -0.15 -7.02 16 5 H 0.07 1.98 7.93 -52.49 -0.42 1.57 16 6 C 0.00 -0.02 4.90 -17.43 -0.09 -0.10 16 7 N -0.89 -25.94 8.60 55.49 0.48 -25.46 16 8 Si 0.90 22.04 29.62 -169.99 -5.04 17.01 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.13 2.63 6.19 -5.20 -0.03 2.59 16 13 C 0.47 9.42 7.54 -10.98 -0.08 9.33 16 14 O -0.51 -12.96 14.04 5.56 0.08 -12.88 16 15 N -0.75 -10.96 5.56 -60.29 -0.33 -11.30 16 16 C 0.13 1.73 5.66 -4.04 -0.02 1.70 16 17 C -0.09 -0.83 5.45 -27.88 -0.15 -0.99 16 18 C -0.07 -0.77 5.13 -104.61 -0.54 -1.31 16 19 C -0.11 -1.11 9.69 -39.58 -0.38 -1.49 16 20 C -0.17 -1.71 9.04 -39.46 -0.36 -2.06 16 21 C 0.09 1.10 6.70 -39.12 -0.26 0.84 16 22 O -0.31 -3.55 10.28 -34.23 -0.35 -3.90 16 23 C 0.03 0.18 9.81 101.05 0.99 1.17 16 24 C 0.10 1.22 6.70 -39.12 -0.26 0.95 16 25 O -0.31 -3.68 10.28 -34.22 -0.35 -4.03 16 26 C 0.03 0.20 9.81 101.05 0.99 1.19 16 27 C -0.17 -1.78 8.69 -39.46 -0.34 -2.13 16 28 H 0.09 2.71 6.35 -51.93 -0.33 2.38 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.02 0.43 6.42 -51.93 -0.33 0.09 16 31 H 0.09 2.48 5.83 -51.93 -0.30 2.18 16 32 H 0.00 0.02 7.98 -51.93 -0.41 -0.39 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 35 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 36 H 0.39 4.23 8.47 -40.82 -0.35 3.88 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 45 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 46 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 47 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.14 1.23 6.30 -52.48 -0.33 0.90 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -35.98 396.64 -8.03 -44.01 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.74 Total: 1.80 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.38 Total: 3.53 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.23 Total: -51.51 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.63 Total: -20.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.04 Total: 17.01 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.98 -8.03 -44.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103991948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.886 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds