Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38060 * 119.57471 * 2 1 4 4 C 1.38836 * 119.32789 * 179.97438 * 3 2 1 5 5 C 1.38335 * 118.50844 * 0.02562 * 4 3 2 6 6 C 1.39094 * 119.09670 * 0.02562 * 5 4 3 7 7 N 1.39005 * 119.70347 * 179.97438 * 6 5 4 8 8 C 1.46958 * 111.00316 * 303.94702 * 7 6 5 9 9 C 1.53049 * 109.36863 * 183.19118 * 8 7 6 10 10 N 1.46961 * 109.36256 * 301.60111 * 9 8 7 11 11 C 1.46897 * 110.99848 * 183.18843 * 10 9 8 12 12 C 1.52996 * 109.47251 * 66.04402 * 11 10 9 13 13 C 1.53002 * 109.47225 * 180.02562 * 12 11 10 14 14 S 1.81000 * 109.47119 * 180.02562 * 13 12 11 15 15 C 1.76195 * 100.00017 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 90.00077 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00257 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00251 * 19 17 15 23 23 C 1.46957 * 110.88081 * 59.32204 * 10 9 8 24 24 H 1.08996 * 109.48996 * 60.64563 * 23 10 9 25 25 C 1.53005 * 109.48661 * 180.71389 * 23 10 9 26 26 C 1.46955 * 111.00202 * 67.75300 * 7 6 5 27 27 N 1.31943 * 119.57237 * 180.24016 * 2 1 3 28 28 H 1.09000 * 109.47605 * 89.99511 * 1 2 3 29 29 H 1.09002 * 109.47551 * 209.99953 * 1 2 3 30 30 H 1.09003 * 109.46963 * 329.99756 * 1 2 3 31 31 H 1.08004 * 120.33797 * 359.96295 * 3 2 1 32 32 H 1.08009 * 120.74943 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.45283 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.48500 * 63.22284 * 8 7 6 35 35 H 1.09000 * 109.48438 * 303.16285 * 8 7 6 36 36 H 1.08993 * 109.48628 * 181.63557 * 9 8 7 37 37 H 1.08997 * 109.50479 * 61.57755 * 9 8 7 38 38 H 1.09000 * 109.47320 * 306.04567 * 11 10 9 39 39 H 1.09000 * 109.46990 * 186.04359 * 11 10 9 40 40 H 1.09001 * 109.47322 * 59.99708 * 12 11 10 41 41 H 1.09006 * 109.47501 * 299.99891 * 12 11 10 42 42 H 1.08997 * 109.46885 * 60.00249 * 13 12 11 43 43 H 1.09000 * 109.46954 * 299.99919 * 13 12 11 44 44 H 0.97006 * 119.99745 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.47181 * 59.99952 * 25 23 10 46 46 H 1.08997 * 109.46575 * 180.02562 * 25 23 10 47 47 H 1.08995 * 109.46800 * 299.99678 * 25 23 10 48 48 H 1.09007 * 109.48809 * 296.77231 * 26 7 6 49 49 H 1.08995 * 109.49667 * 56.81843 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2007 0.0000 4 6 3.5767 1.1947 0.0005 5 6 4.2317 -0.0237 0.0005 6 6 3.4815 -1.1950 -0.0006 7 7 4.1267 -2.4262 -0.0012 8 6 5.0502 -2.5364 -1.1390 9 6 5.6791 -3.9317 -1.1490 10 7 6.3832 -4.1579 0.1210 11 6 7.0649 -5.4591 0.1203 12 6 8.1863 -5.4468 -0.9204 13 6 8.8960 -6.8023 -0.9215 14 16 10.2231 -6.7874 -2.1523 15 6 10.8508 -8.4207 -1.9451 16 1 10.4059 -9.0818 -1.2161 17 6 11.9179 -8.8574 -2.7179 18 7 12.3871 -10.0774 -2.5628 19 14 12.6879 -7.7138 -3.9783 20 1 13.7864 -6.9433 -3.3418 21 1 11.6572 -6.7753 -4.4903 22 1 13.2325 -8.5134 -5.1049 23 6 5.4596 -4.0479 1.2588 24 1 4.6757 -4.7994 1.1649 25 6 6.2277 -4.2709 2.5631 26 6 4.8307 -2.6525 1.2688 27 7 2.1581 -1.1475 -0.0048 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6469 2.1352 -0.0006 32 1 4.1330 2.1206 0.0010 33 1 5.3110 -0.0650 0.0005 34 1 5.8341 -1.7849 -1.0451 35 1 4.5030 -2.3774 -2.0681 36 1 6.3862 -4.0059 -1.9751 37 1 4.8979 -4.6821 -1.2704 38 1 6.3497 -6.2440 -0.1255 39 1 7.4872 -5.6485 1.1072 40 1 8.9016 -4.6619 -0.6746 41 1 7.7641 -5.2574 -1.9074 42 1 8.1805 -7.5868 -1.1677 43 1 9.3183 -6.9921 0.0653 44 1 13.1326 -10.3826 -3.1032 45 1 7.0108 -3.5185 2.6568 46 1 5.5423 -4.1897 3.4067 47 1 6.6770 -5.2639 2.5548 48 1 5.6122 -1.9023 1.3900 49 1 4.1237 -2.5779 2.0950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107147147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = 45.108409 kcal Electronic energy + Delta-G solvation = -25990.668280 eV Core-core repulsion = 22464.756559 eV Total energy + Delta-G solvation = -3525.911721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10764 -39.45816 -36.53830 -33.67789 -33.13529 -32.44645 -32.41975 -31.45198 -28.30097 -27.59927 -26.66335 -25.70471 -24.39389 -23.25955 -22.77967 -21.65912 -20.87976 -19.74127 -17.53969 -17.39819 -16.78127 -16.46316 -16.01250 -15.67562 -15.30509 -14.95815 -14.85906 -14.54875 -14.45958 -14.24809 -13.99984 -13.73536 -13.30587 -13.01016 -12.84864 -12.78336 -12.67452 -12.40510 -12.27353 -12.21379 -12.03084 -11.87602 -11.64520 -11.30561 -11.25582 -11.04255 -10.99902 -10.78796 -10.28589 -10.17987 -10.10214 -10.06856 -9.75873 -9.16593 -8.99322 -8.72179 -8.54561 -8.38197 -6.92498 -6.27160 -3.99111 0.63891 0.91029 3.01295 3.05306 3.30918 3.31796 3.46211 3.54119 3.79945 4.19540 4.32748 4.35645 4.45972 4.63587 4.67207 4.72027 4.80622 4.83603 4.87583 5.02314 5.10782 5.11577 5.12537 5.14982 5.18644 5.21292 5.28436 5.36445 5.45306 5.51404 5.56278 5.60264 5.60912 5.67420 5.70553 5.74761 5.80365 5.84551 5.87347 6.00355 6.08400 6.16171 6.26087 6.49203 6.53240 6.65795 6.81705 7.01063 7.03642 7.78373 7.96608 8.45649 9.18836 10.82321 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025186 B = 0.001919 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.451917 B =14590.636040 C =15107.837548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.138 3.862 3 C -0.181 4.181 4 C -0.062 4.062 5 C -0.205 4.205 6 C 0.316 3.684 7 N -0.502 5.502 8 C 0.068 3.932 9 C 0.054 3.946 10 N -0.535 5.535 11 C 0.056 3.944 12 C -0.096 4.096 13 C -0.082 4.082 14 S -0.216 6.216 15 C -0.502 4.502 16 H 0.088 0.912 17 C 0.091 3.909 18 N -0.882 5.882 19 Si 0.862 3.138 20 H -0.269 1.269 21 H -0.238 1.238 22 H -0.276 1.276 23 C 0.084 3.916 24 H 0.052 0.948 25 C -0.149 4.149 26 C 0.077 3.923 27 N -0.468 5.468 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.270 0.730 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.049 0.951 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.935 23.767 7.965 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.001 4.001 3 C -0.201 4.201 4 C -0.088 4.088 5 C -0.228 4.228 6 C 0.087 3.913 7 N -0.225 5.225 8 C -0.059 4.059 9 C -0.074 4.074 10 N -0.260 5.260 11 C -0.073 4.073 12 C -0.135 4.135 13 C -0.231 4.231 14 S 0.012 5.988 15 C -0.649 4.649 16 H 0.106 0.894 17 C -0.117 4.117 18 N -0.519 5.519 19 Si 0.687 3.313 20 H -0.194 1.194 21 H -0.162 1.162 22 H -0.202 1.202 23 C -0.025 4.025 24 H 0.070 0.930 25 C -0.207 4.207 26 C -0.050 4.050 27 N -0.179 5.179 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.938 23.636 7.195 33.042 hybrid contribution 0.674 0.013 0.188 0.700 sum -21.265 23.650 7.383 32.650 Atomic orbital electron populations 1.20732 0.88586 1.03561 1.03251 1.21216 0.97000 0.87670 0.94206 1.21970 0.94938 0.99353 1.03875 1.21492 0.94383 0.98107 0.94835 1.22590 1.01886 0.93949 1.04363 1.19499 0.89106 0.88418 0.94322 1.58792 1.30928 1.28381 1.04366 1.22253 0.93389 0.97864 0.92396 1.22217 0.96918 0.95345 0.92890 1.62198 1.29136 1.32609 1.02059 1.22256 0.95870 0.88387 1.00816 1.21333 0.96694 0.96901 0.98572 1.23013 0.99588 0.98821 1.01656 1.84140 1.40329 1.23562 1.50755 1.22132 1.20365 0.95793 1.26654 0.89446 1.24801 0.95457 0.94967 0.96476 1.69943 1.25459 1.16477 1.40021 0.86664 0.81361 0.81660 0.81612 1.19385 1.16186 1.20153 1.21624 0.93478 0.95774 0.91607 0.93030 1.21901 1.00523 1.02914 0.95318 1.22229 0.96049 0.97022 0.89659 1.67143 1.09010 1.29444 1.12285 0.90268 0.90287 0.90629 0.84729 0.84754 0.84817 0.93093 0.90148 0.88988 0.93649 0.94658 0.89993 0.90742 0.91647 0.91592 0.91450 0.92010 0.91587 0.92143 0.91515 0.93228 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.17 36.00 0.37 -0.24 16 2 C 0.14 1.22 6.78 -82.61 -0.56 0.66 16 3 C -0.18 -1.28 9.73 -39.43 -0.38 -1.66 16 4 C -0.06 -0.45 10.16 -39.32 -0.40 -0.85 16 5 C -0.20 -1.82 8.67 -39.23 -0.34 -2.16 16 6 C 0.32 3.47 5.72 -155.02 -0.89 2.58 16 7 N -0.50 -5.58 4.76 -173.04 -0.82 -6.40 16 8 C 0.07 0.71 5.25 -3.77 -0.02 0.69 16 9 C 0.05 0.61 5.41 -3.77 -0.02 0.59 16 10 N -0.53 -6.20 4.53 -226.49 -1.03 -7.22 16 11 C 0.06 0.71 4.72 -3.83 -0.02 0.69 16 12 C -0.10 -1.46 5.15 -26.73 -0.14 -1.60 16 13 C -0.08 -1.58 5.67 37.16 0.21 -1.36 16 14 S -0.22 -5.27 19.41 -107.50 -2.09 -7.35 16 15 C -0.50 -14.64 10.04 30.94 0.31 -14.33 16 16 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 17 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 18 N -0.88 -26.88 13.97 55.49 0.78 -26.11 16 19 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.08 0.88 2.56 -67.65 -0.17 0.70 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.15 -1.35 8.89 37.16 0.33 -1.02 16 26 C 0.08 0.78 4.67 -3.76 -0.02 0.76 16 27 N -0.47 -5.44 10.31 -8.67 -0.09 -5.53 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.13 1.07 7.03 -52.48 -0.37 0.70 16 34 H 0.05 0.51 7.02 -51.93 -0.36 0.15 16 35 H 0.08 0.82 8.13 -51.93 -0.42 0.39 16 36 H 0.09 1.04 6.33 -51.93 -0.33 0.71 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 39 H 0.08 1.01 5.74 -51.93 -0.30 0.71 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.99 6.49 -51.93 -0.34 0.66 16 42 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 43 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.63 6.15 -51.93 -0.32 0.31 16 48 H 0.05 0.49 7.64 -51.92 -0.40 0.09 16 49 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -32.62 395.35 -12.17 -44.79 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.33 Total: -1.08 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.83 Total: -13.98 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.16 Total: -45.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -2.09 Total: -7.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.62 -12.17 -44.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107147147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.894 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds