Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.50160 * 2 1 4 4 C 1.53197 * 109.52449 * 239.92235 * 2 1 3 5 5 N 1.46957 * 108.89063 * 185.47780 * 4 2 1 6 6 S 1.65602 * 120.65077 * 233.53076 * 5 4 2 7 7 O 1.42094 * 104.28022 * 25.89190 * 6 5 4 8 8 O 1.42101 * 104.27558 * 153.74908 * 6 5 4 9 9 C 1.81399 * 104.44897 * 269.81777 * 6 5 4 10 10 C 1.53000 * 109.47282 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.47256 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00161 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99742 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00322 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99866 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46618 * 60.00088 * 15 13 11 17 17 H 1.48494 * 109.47076 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47088 * 300.00339 * 15 13 11 19 19 C 1.46926 * 118.71783 * 53.35357 * 5 4 2 20 20 C 1.53191 * 108.89109 * 306.64359 * 19 5 4 21 21 C 1.53040 * 109.49838 * 120.06923 * 2 1 3 22 22 H 1.08994 * 109.45892 * 61.32829 * 21 2 1 23 23 C 1.50698 * 109.46186 * 301.36590 * 21 2 1 24 24 C 1.38235 * 119.99960 * 299.66179 * 23 21 2 25 25 C 1.38238 * 119.99849 * 179.78481 * 24 23 21 26 26 C 1.38229 * 119.99995 * 0.46513 * 25 24 23 27 27 C 1.38233 * 119.99928 * 359.76163 * 26 25 24 28 28 C 1.38227 * 120.00144 * 119.92950 * 23 21 2 29 29 H 1.09002 * 109.47062 * 299.93194 * 1 2 3 30 30 H 1.09002 * 109.47288 * 59.92936 * 1 2 3 31 31 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.58145 * 305.18771 * 4 2 1 33 33 H 1.08998 * 109.58437 * 65.60614 * 4 2 1 34 34 H 1.08996 * 109.47438 * 300.00379 * 9 6 5 35 35 H 1.08998 * 109.46957 * 60.00644 * 9 6 5 36 36 H 1.09004 * 109.47140 * 300.00847 * 10 9 6 37 37 H 1.09009 * 109.46881 * 59.99999 * 10 9 6 38 38 H 0.96998 * 119.99945 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.58861 * 186.78362 * 19 5 4 40 40 H 1.08996 * 109.58519 * 66.50253 * 19 5 4 41 41 H 1.09003 * 109.49294 * 174.51508 * 20 19 5 42 42 H 1.09001 * 109.49969 * 294.57596 * 20 19 5 43 43 H 1.08005 * 120.00051 * 359.97438 * 24 23 21 44 44 H 1.07999 * 119.99786 * 180.25210 * 25 24 23 45 45 H 1.07995 * 119.99779 * 179.79404 * 26 25 24 46 46 H 1.08003 * 119.99573 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.00040 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7236 -1.2495 5 7 3.5054 -0.8314 -1.1707 6 16 4.4598 -0.2896 -2.4109 7 8 3.6770 0.7137 -3.0430 8 8 5.6961 0.0302 -1.7876 9 6 4.6489 -1.7290 -3.4986 10 6 5.5223 -1.3516 -4.6967 11 6 5.6788 -2.5472 -5.6006 12 1 5.2026 -3.4825 -5.3463 13 6 6.4300 -2.4469 -6.7525 14 7 7.0104 -1.3080 -7.0620 15 14 6.6235 -3.9287 -7.8734 16 1 5.2873 -4.3641 -8.3532 17 1 7.4723 -3.5628 -9.0355 18 1 7.2650 -5.0373 -7.1220 19 6 4.1059 -1.4256 0.0314 20 6 3.5708 -0.6941 1.2665 21 6 2.0407 -0.7228 1.2485 22 1 1.6971 -1.7571 1.2353 23 6 1.5112 -0.0337 2.4796 24 6 1.8223 1.2920 2.7174 25 6 1.3328 1.9254 3.8444 26 6 0.5402 1.2304 4.7386 27 6 0.2330 -0.0966 4.5032 28 6 0.7189 -0.7288 3.3739 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6062 -1.7216 -1.2979 33 1 1.7643 -0.1579 -2.1388 34 1 5.1211 -2.5418 -2.9469 35 1 3.6683 -2.0500 -3.8501 36 1 5.0505 -0.5386 -5.2486 37 1 6.5028 -1.0308 -4.3448 38 1 7.5385 -1.2374 -7.8726 39 1 5.1901 -1.3230 -0.0128 40 1 3.8408 -2.4813 0.0886 41 1 3.9334 -1.1886 2.1676 42 1 3.9159 0.3398 1.2549 43 1 2.4453 1.8338 2.0211 44 1 1.5726 2.9623 4.0281 45 1 0.1606 1.7243 5.6207 46 1 -0.3867 -0.6395 5.2016 47 1 0.4790 -1.7656 3.1902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110625869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -68.588237 kcal Electronic energy + Delta-G solvation = -27321.922249 eV Core-core repulsion = 23595.642947 eV Total energy + Delta-G solvation = -3726.279302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23352 -38.18339 -36.66549 -35.43367 -34.07059 -33.88210 -32.46836 -31.15544 -31.12789 -29.93725 -26.85668 -25.61587 -24.78961 -22.97311 -22.32786 -21.74268 -21.46353 -19.85938 -18.40137 -17.61511 -17.07187 -16.49204 -15.99398 -15.57758 -15.41244 -15.09064 -14.78143 -14.57046 -14.56498 -14.17386 -14.03155 -13.64311 -13.41851 -13.31397 -13.00421 -12.57705 -12.49996 -12.32837 -12.22109 -12.01310 -11.75645 -11.58669 -11.54181 -11.38772 -11.35352 -11.12361 -11.06722 -10.96852 -10.86121 -10.70346 -10.44496 -10.37543 -10.31992 -9.75636 -9.33190 -9.13690 -8.86660 -8.74762 -8.50334 -6.12489 -4.18204 0.75833 1.14515 1.18363 3.02712 3.26924 3.31724 3.33557 3.56373 4.27391 4.36290 4.38521 4.44865 4.53198 4.74042 4.76995 4.82411 4.89437 4.93177 4.97298 5.13130 5.22339 5.22806 5.27032 5.32932 5.40485 5.50963 5.56593 5.59325 5.63839 5.69230 5.73674 5.75215 5.81495 5.85009 5.91409 5.97771 6.01671 6.18694 6.24023 6.26599 6.30700 6.49201 6.50070 6.69827 6.79078 7.29676 7.35864 7.80222 8.17487 8.84962 9.46427 10.98478 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.002397 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.255650 B =11677.808486 C =11823.746000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.122 3.878 5 N -1.007 6.007 6 S 2.589 3.411 7 O -0.964 6.964 8 O -0.964 6.964 9 C -0.589 4.589 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.057 3.943 14 N -0.891 5.891 15 Si 0.901 3.099 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.118 3.882 20 C -0.122 4.122 21 C -0.043 4.043 22 H 0.080 0.920 23 C -0.066 4.066 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.118 4.118 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 1.107 22.561 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.003 4.003 5 N -0.843 5.843 6 S 2.689 3.311 7 O -0.955 6.955 8 O -0.955 6.955 9 C -0.722 4.722 10 C -0.011 4.011 11 C -0.560 4.560 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.008 4.008 20 C -0.161 4.161 21 C -0.062 4.062 22 H 0.099 0.901 23 C -0.066 4.066 24 C -0.132 4.132 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.136 4.136 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.877 2.094 22.369 26.407 hybrid contribution -0.033 -1.414 -0.691 1.574 sum -13.910 0.680 21.677 25.765 Atomic orbital electron populations 1.21790 0.94400 1.01992 1.02150 1.21486 0.95868 1.00220 0.93848 0.90399 1.21486 0.79155 1.00652 0.99010 1.57963 1.15915 1.78670 1.31742 1.05702 0.73398 0.77663 0.74364 1.93524 1.69927 1.55492 1.76513 1.93525 1.44204 1.83302 1.74442 1.30494 1.10165 1.17783 1.13800 1.18959 0.93730 0.98814 0.89584 1.20963 1.32150 0.96601 1.06290 0.92112 1.25076 0.95332 0.96292 0.97819 1.69944 1.32623 1.24724 1.25562 0.86522 0.78214 0.82509 0.79979 1.20075 1.21069 1.20082 1.21400 0.98880 0.96654 0.83820 1.21931 0.94249 1.02041 0.97904 1.20224 0.95311 0.99220 0.91419 0.90122 1.19857 0.96840 0.94111 0.95777 1.21068 1.00021 0.94563 0.97551 1.21153 0.97898 0.99861 0.94702 1.21115 0.99217 0.94822 0.99538 1.21117 1.00118 0.95041 0.97544 1.21058 0.98204 0.99781 0.94542 0.92275 0.92245 0.92538 0.91499 0.88565 0.86301 0.86306 0.94905 0.94898 0.92464 0.88573 0.91531 0.90707 0.91096 0.86067 0.86251 0.86437 0.86348 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.93 37.15 0.33 -0.92 16 2 C -0.09 -0.95 2.22 -90.50 -0.20 -1.15 16 3 H 0.08 0.88 7.46 -51.93 -0.39 0.50 16 4 C 0.12 1.40 5.71 -3.69 -0.02 1.38 16 5 N -1.01 -13.41 3.23 -113.50 -0.37 -13.78 16 6 S 2.59 46.54 5.45 -107.50 -0.59 45.96 16 7 O -0.96 -19.83 16.59 -57.54 -0.95 -20.79 16 8 O -0.96 -19.82 16.59 -57.54 -0.95 -20.78 16 9 C -0.59 -11.29 6.12 37.16 0.23 -11.06 16 10 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 11 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 15 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.12 1.32 6.43 -3.71 -0.02 1.30 16 20 C -0.12 -1.21 5.15 -26.61 -0.14 -1.35 16 21 C -0.04 -0.39 1.88 -91.73 -0.17 -0.56 16 22 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 23 C -0.07 -0.59 3.45 -104.63 -0.36 -0.95 16 24 C -0.11 -1.07 8.74 -39.58 -0.35 -1.41 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.13 -1.01 10.05 -39.59 -0.40 -1.41 16 27 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 28 C -0.12 -0.97 9.67 -39.59 -0.38 -1.35 16 29 H 0.06 0.52 7.18 -51.93 -0.37 0.15 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.20 6.86 -51.93 -0.36 0.84 16 34 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.10 1.16 6.86 -51.93 -0.36 0.81 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 43 H 0.12 1.13 7.14 -52.48 -0.37 0.76 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 47 H 0.12 0.81 7.95 -52.49 -0.42 0.39 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -34.14 386.23 -11.83 -45.97 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.67 Total: 0.06 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: -2.83 Total: -32.85 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.37 Total: -39.59 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.91 Total: -41.57 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 46.54 SS G_CDS: -0.59 Total: 45.96 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.14 -11.83 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110625869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.619 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds